14s autopkgtest [11:41:03]: starting date and time: 2024-08-10 11:41:03+0000 14s autopkgtest [11:41:03]: git checkout: fd3bed09 nova: allow more retries for quota issues 14s autopkgtest [11:41:03]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.w0bn03j4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lapack --apt-upgrade qtltools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lapack/3.12.0-3build1.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-15.secgroup --name adt-noble-ppc64el-qtltools-20240810-114044-juju-7f2275-prod-proposed-migration-environment-3-b239d3df-3329-4afd-aa5b-13d0c7424017 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 286s autopkgtest [11:45:35]: testbed dpkg architecture: ppc64el 306s autopkgtest [11:45:55]: testbed apt version: 2.7.14build2 306s autopkgtest [11:45:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 308s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [265 kB] 308s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2280 B] 308s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [16.8 kB] 308s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [85.2 kB] 308s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [29.0 kB] 308s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [144 kB] 308s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [5060 B] 308s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1548 B] 308s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 308s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [81.5 kB] 308s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [2548 B] 308s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 310s Fetched 634 kB in 1s (821 kB/s) 310s Reading package lists... 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 321s Calculating upgrade... 321s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 322s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 338s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 338s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 338s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 338s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 339s Reading package lists... 339s Reading package lists... 339s Building dependency tree... 339s Reading state information... 339s Calculating upgrade... 339s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 340s Reading package lists... 340s Building dependency tree... 340s Reading state information... 340s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 370s autopkgtest [11:46:59]: testbed running kernel: Linux 6.8.0-40-generic #40-Ubuntu SMP Fri Jul 5 10:50:38 UTC 2024 370s autopkgtest [11:46:59]: @@@@@@@@@@@@@@@@@@@@ apt-source qtltools 413s Get:1 http://ftpmaster.internal/ubuntu noble/universe qtltools 1.3.1+dfsg-4build3 (dsc) [2293 B] 413s Get:2 http://ftpmaster.internal/ubuntu noble/universe qtltools 1.3.1+dfsg-4build3 (tar) [141 kB] 413s Get:3 http://ftpmaster.internal/ubuntu noble/universe qtltools 1.3.1+dfsg-4build3 (diff) [13.6 MB] 413s gpgv: Signature made Mon Apr 1 07:33:53 2024 UTC 413s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 413s gpgv: Can't check signature: No public key 413s dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4build3.dsc: no acceptable signature found 414s autopkgtest [11:47:43]: testing package qtltools version 1.3.1+dfsg-4build3 454s autopkgtest [11:48:23]: build not needed 491s autopkgtest [11:49:00]: test run-sample-analysis: preparing testbed 492s Reading package lists... 492s Building dependency tree... 492s Reading state information... 492s Starting pkgProblemResolver with broken count: 0 492s Starting 2 pkgProblemResolver with broken count: 0 492s Done 492s The following additional packages will be installed: 492s fontconfig libblas3 libboost-iostreams1.83.0 libboost-program-options1.83.0 492s libcairo2 libdatrie1 libgfortran5 libgomp1 libgraphite2-3 libgsl27 492s libgslcblas0 libharfbuzz0b libhts3t64 libhtscodecs2 libice6 liblapack3 492s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 492s libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data libthai0 libtk8.6 492s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 qtltools 492s qtltools-example r-base-core r-mathlib unzip x11-common xdg-utils zip 492s Suggested packages: 492s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6 492s elpa-ess r-doc-info | r-doc-pdf r-base-html 492s Recommended packages: 492s r-bioc-qvalue r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl 492s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 492s The following NEW packages will be installed: 492s autopkgtest-satdep fontconfig libblas3 libboost-iostreams1.83.0 492s libboost-program-options1.83.0 libcairo2 libdatrie1 libgfortran5 libgomp1 492s libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhts3t64 libhtscodecs2 492s libice6 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 492s libpaper-utils libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data 492s libthai0 libtk8.6 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 492s libxt6t64 qtltools qtltools-example r-base-core r-mathlib unzip x11-common 492s xdg-utils zip 492s 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. 492s Need to get 56.0 MB/56.0 MB of archives. 492s After this operation, 108 MB of additional disk space will be used. 492s Get:1 /tmp/autopkgtest.2vimi7/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 493s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 493s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblas3 ppc64el 3.12.0-3build1.1 [222 kB] 493s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-2.1ubuntu3 [260 kB] 493s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-program-options1.83.0 ppc64el 1.83.0-2.1ubuntu3 [329 kB] 493s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 493s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1ubuntu2 [17.7 kB] 493s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1ubuntu2 [6184 B] 493s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 493s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB] 493s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 508s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240412-0ubuntu1 [574 kB] 508s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240412-0ubuntu1 [161 kB] 508s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB] 508s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu2 [86.6 kB] 508s Get:16 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu2 [1090 kB] 508s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 508s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 508s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3t64 ppc64el 1.19+ds-1.1build3 [569 kB] 508s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 508s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB] 508s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblapack3 ppc64el 3.12.0-3build1.1 [2783 kB] 508s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 508s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 508s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.52.1+ds-1build1 [271 kB] 508s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.1+ds-1build1 [50.5 kB] 508s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.1+ds-1build1 [31.1 kB] 508s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB] 508s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B] 508s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB] 508s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 508s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 508s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 508s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 508s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 508s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-mathlib ppc64el 4.3.3-2build2 [2440 kB] 508s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13build1 [198 kB] 508s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu4 [192 kB] 508s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 508s Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.3-2build2 [27.4 MB] 508s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el qtltools ppc64el 1.3.1+dfsg-4build3 [828 kB] 508s Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el qtltools-example all 1.3.1+dfsg-4build3 [13.6 MB] 508s Preconfiguring packages ... 508s Fetched 56.0 MB in 7s (8329 kB/s) 508s Selecting previously unselected package fontconfig. 508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 102925 files and directories currently installed.) 508s Preparing to unpack .../00-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 508s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 508s Selecting previously unselected package libblas3:ppc64el. 508s Preparing to unpack .../01-libblas3_3.12.0-3build1.1_ppc64el.deb ... 508s Unpacking libblas3:ppc64el (3.12.0-3build1.1) ... 508s Selecting previously unselected package libboost-iostreams1.83.0:ppc64el. 508s Preparing to unpack .../02-libboost-iostreams1.83.0_1.83.0-2.1ubuntu3_ppc64el.deb ... 508s Unpacking libboost-iostreams1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 508s Selecting previously unselected package libboost-program-options1.83.0:ppc64el. 508s Preparing to unpack .../03-libboost-program-options1.83.0_1.83.0-2.1ubuntu3_ppc64el.deb ... 508s Unpacking libboost-program-options1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 508s Selecting previously unselected package libpixman-1-0:ppc64el. 508s Preparing to unpack .../04-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 508s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 508s Selecting previously unselected package libxcb-render0:ppc64el. 508s Preparing to unpack .../05-libxcb-render0_1.15-1ubuntu2_ppc64el.deb ... 508s Unpacking libxcb-render0:ppc64el (1.15-1ubuntu2) ... 508s Selecting previously unselected package libxcb-shm0:ppc64el. 508s Preparing to unpack .../06-libxcb-shm0_1.15-1ubuntu2_ppc64el.deb ... 508s Unpacking libxcb-shm0:ppc64el (1.15-1ubuntu2) ... 508s Selecting previously unselected package libxrender1:ppc64el. 508s Preparing to unpack .../07-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 508s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 508s Selecting previously unselected package libcairo2:ppc64el. 508s Preparing to unpack .../08-libcairo2_1.18.0-3build1_ppc64el.deb ... 508s Unpacking libcairo2:ppc64el (1.18.0-3build1) ... 508s Selecting previously unselected package libdatrie1:ppc64el. 508s Preparing to unpack .../09-libdatrie1_0.2.13-3build1_ppc64el.deb ... 508s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 508s Selecting previously unselected package libgfortran5:ppc64el. 508s Preparing to unpack .../10-libgfortran5_14-20240412-0ubuntu1_ppc64el.deb ... 508s Unpacking libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 508s Selecting previously unselected package libgomp1:ppc64el. 508s Preparing to unpack .../11-libgomp1_14-20240412-0ubuntu1_ppc64el.deb ... 508s Unpacking libgomp1:ppc64el (14-20240412-0ubuntu1) ... 508s Selecting previously unselected package libgraphite2-3:ppc64el. 508s Preparing to unpack .../12-libgraphite2-3_1.3.14-2build1_ppc64el.deb ... 508s Unpacking libgraphite2-3:ppc64el (1.3.14-2build1) ... 508s Selecting previously unselected package libgslcblas0:ppc64el. 508s Preparing to unpack .../13-libgslcblas0_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 508s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 508s Selecting previously unselected package libgsl27:ppc64el. 508s Preparing to unpack .../14-libgsl27_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 508s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 508s Selecting previously unselected package libharfbuzz0b:ppc64el. 508s Preparing to unpack .../15-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 508s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 508s Selecting previously unselected package libhtscodecs2:ppc64el. 508s Preparing to unpack .../16-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 508s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 508s Selecting previously unselected package libhts3t64:ppc64el. 508s Preparing to unpack .../17-libhts3t64_1.19+ds-1.1build3_ppc64el.deb ... 508s Unpacking libhts3t64:ppc64el (1.19+ds-1.1build3) ... 508s Selecting previously unselected package x11-common. 508s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 508s Unpacking x11-common (1:7.7+23ubuntu3) ... 508s Selecting previously unselected package libice6:ppc64el. 508s Preparing to unpack .../19-libice6_2%3a1.0.10-1build3_ppc64el.deb ... 508s Unpacking libice6:ppc64el (2:1.0.10-1build3) ... 508s Selecting previously unselected package liblapack3:ppc64el. 508s Preparing to unpack .../20-liblapack3_3.12.0-3build1.1_ppc64el.deb ... 508s Unpacking liblapack3:ppc64el (3.12.0-3build1.1) ... 508s Selecting previously unselected package libthai-data. 508s Preparing to unpack .../21-libthai-data_0.1.29-2build1_all.deb ... 508s Unpacking libthai-data (0.1.29-2build1) ... 508s Selecting previously unselected package libthai0:ppc64el. 508s Preparing to unpack .../22-libthai0_0.1.29-2build1_ppc64el.deb ... 508s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 508s Selecting previously unselected package libpango-1.0-0:ppc64el. 508s Preparing to unpack .../23-libpango-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 508s Unpacking libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ... 508s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 508s Preparing to unpack .../24-libpangoft2-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 508s Unpacking libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ... 508s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 508s Preparing to unpack .../25-libpangocairo-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 508s Unpacking libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ... 508s Selecting previously unselected package libpaper1:ppc64el. 508s Preparing to unpack .../26-libpaper1_1.1.29build1_ppc64el.deb ... 508s Unpacking libpaper1:ppc64el (1.1.29build1) ... 508s Selecting previously unselected package libpaper-utils. 508s Preparing to unpack .../27-libpaper-utils_1.1.29build1_ppc64el.deb ... 508s Unpacking libpaper-utils (1.1.29build1) ... 508s Selecting previously unselected package libsm6:ppc64el. 508s Preparing to unpack .../28-libsm6_2%3a1.2.3-1build3_ppc64el.deb ... 508s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ... 508s Selecting previously unselected package libtcl8.6:ppc64el. 508s Preparing to unpack .../29-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 508s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 508s Selecting previously unselected package libxft2:ppc64el. 508s Preparing to unpack .../30-libxft2_2.3.6-1build1_ppc64el.deb ... 508s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 508s Selecting previously unselected package libxss1:ppc64el. 508s Preparing to unpack .../31-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 508s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 508s Selecting previously unselected package libtk8.6:ppc64el. 508s Preparing to unpack .../32-libtk8.6_8.6.14-1build1_ppc64el.deb ... 508s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 508s Selecting previously unselected package libxt6t64:ppc64el. 508s Preparing to unpack .../33-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 508s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 508s Selecting previously unselected package r-mathlib. 508s Preparing to unpack .../34-r-mathlib_4.3.3-2build2_ppc64el.deb ... 508s Unpacking r-mathlib (4.3.3-2build2) ... 508s Selecting previously unselected package zip. 508s Preparing to unpack .../35-zip_3.0-13build1_ppc64el.deb ... 508s Unpacking zip (3.0-13build1) ... 508s Selecting previously unselected package unzip. 508s Preparing to unpack .../36-unzip_6.0-28ubuntu4_ppc64el.deb ... 508s Unpacking unzip (6.0-28ubuntu4) ... 508s Selecting previously unselected package xdg-utils. 508s Preparing to unpack .../37-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 508s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 508s Selecting previously unselected package r-base-core. 508s Preparing to unpack .../38-r-base-core_4.3.3-2build2_ppc64el.deb ... 508s Unpacking r-base-core (4.3.3-2build2) ... 508s Selecting previously unselected package qtltools. 508s Preparing to unpack .../39-qtltools_1.3.1+dfsg-4build3_ppc64el.deb ... 508s Unpacking qtltools (1.3.1+dfsg-4build3) ... 508s Selecting previously unselected package qtltools-example. 508s Preparing to unpack .../40-qtltools-example_1.3.1+dfsg-4build3_all.deb ... 508s Unpacking qtltools-example (1.3.1+dfsg-4build3) ... 508s Selecting previously unselected package autopkgtest-satdep. 508s Preparing to unpack .../41-1-autopkgtest-satdep.deb ... 508s Unpacking autopkgtest-satdep (0) ... 508s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 508s Setting up libgraphite2-3:ppc64el (1.3.14-2build1) ... 508s Setting up qtltools-example (1.3.1+dfsg-4build3) ... 508s Setting up libboost-program-options1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 508s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ... 508s Setting up libpaper1:ppc64el (1.1.29build1) ... 508s 508s Creating config file /etc/papersize with new version 508s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 508s Regenerating fonts cache... done. 508s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 508s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 508s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 508s Setting up libxcb-render0:ppc64el (1.15-1ubuntu2) ... 508s Setting up unzip (6.0-28ubuntu4) ... 508s Setting up x11-common (1:7.7+23ubuntu3) ... 508s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 508s Setting up libxcb-shm0:ppc64el (1.15-1ubuntu2) ... 508s Setting up libpaper-utils (1.1.29build1) ... 508s Setting up libgomp1:ppc64el (14-20240412-0ubuntu1) ... 508s Setting up libcairo2:ppc64el (1.18.0-3build1) ... 508s Setting up zip (3.0-13build1) ... 508s Setting up libblas3:ppc64el (3.12.0-3build1.1) ... 508s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 508s Setting up libboost-iostreams1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 508s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 508s Setting up libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 508s Setting up r-mathlib (4.3.3-2build2) ... 508s Setting up libhts3t64:ppc64el (1.19+ds-1.1build3) ... 508s Setting up libharfbuzz0b:ppc64el (8.3.0-2build2) ... 508s Setting up libthai-data (0.1.29-2build1) ... 508s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 508s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 508s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 508s Setting up libice6:ppc64el (2:1.0.10-1build3) ... 508s Setting up liblapack3:ppc64el (3.12.0-3build1.1) ... 508s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 508s Setting up libxft2:ppc64el (2.3.6-1build1) ... 508s Setting up libtk8.6:ppc64el (8.6.14-1build1) ... 508s Setting up libthai0:ppc64el (0.1.29-2build1) ... 508s Setting up libsm6:ppc64el (2:1.2.3-1build3) ... 508s Setting up libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ... 508s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 508s Setting up libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ... 508s Setting up libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ... 508s Setting up r-base-core (4.3.3-2build2) ... 508s 508s Creating config file /etc/R/Renviron with new version 508s Setting up qtltools (1.3.1+dfsg-4build3) ... 508s Setting up autopkgtest-satdep (0) ... 508s Processing triggers for man-db (2.12.0-4build2) ... 508s Processing triggers for install-info (7.1-3build2) ... 508s Processing triggers for libc-bin (2.39-0ubuntu8.2) ... 516s (Reading database ... 104849 files and directories currently installed.) 516s Removing autopkgtest-satdep (0) ... 517s autopkgtest [11:49:26]: test run-sample-analysis: [----------------------- 517s ./genes.50percent.chr22.bed.gz 517s ./genes.50percent.chr22.bed.gz.tbi 517s ./genes.covariates.pc50.txt.gz 517s ./genes.simulated.chr22.bed.gz 517s ./genes.simulated.chr22.bed.gz.tbi 517s ./genotypes.chr22.vcf.gz 518s ./genotypes.chr22.vcf.gz.tbi 518s 518s QTLtools 518s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 518s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 518s * Webpage : https://qtltools.github.io/qtltools/ 518s * Version : 1.3.1 518s * Date : 10/08/2024 - 11:49:27 518s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 518s 518s CONDUCT PCA ON DATA 518s 518s Initialize random number generator 518s * Built-in seed is 15112011 518s * First Integer = 30553 518s * First Double = 0.0126695 518s 518s Reading sample list from [genes.50percent.chr22.bed.gz] 518s * #samples = 358 518s 518s Merging sample sets from all input files 518s * #files = 1 518s * #samples in all files = 358 518s 518s Reading phenotype data in [genes.50percent.chr22.bed.gz] 518s * 358 samples included 518s * 608 phenotypes included 518s 518s Calculating PCA with a matrix 358 x 608 518s * Calculated mean and sd 518s * 0 sd==0 columns removed 518s * Variables centered 518s * Variables scaled to unit variance 518s * Running SVD 518s * SVD complete 518s * Calculated sd and var for PCs 518s * Calculated cumulative var for PCs 518s * Done! 518s 518s Running time: 0 seconds 518s 518s QTLtools 518s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 518s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 518s * Webpage : https://qtltools.github.io/qtltools/ 518s * Version : 1.3.1 518s * Date : 10/08/2024 - 11:49:27 518s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 518s 518s MAPPING QTL IN CIS 518s * TASK: Report all nominal associations with p <= 0.01 518s * Linear model: Phe ~ Var + Cov 518s * Cis-window size is 1000000 bp 518s * Region = [chr22:17000000-18000000] 518s 518s Initialize random number generator 518s * Built-in seed is 15112011 518s * First Integer = 30553 518s * First Double = 0.0126695 518s 518s Reading sample list from [genes.50percent.chr22.bed.gz] 518s * #samples = 358 518s 518s Read sample list from [genotypes.chr22.vcf.gz] 518s * #samples = 358 518s 518s Reading sample list from [genes.covariates.pc50.txt.gz] 518s * #samples = 358 518s 518s Merging sample sets from all input files 518s * #files = 3 518s * #samples in all files = 358 518s 518s Reading phenotype data in [genes.50percent.chr22.bed.gz] 518s * target region [chr22:17000000-18000000] 518s * 8 phenotypes included 518s * 3 phenotypes are on the negative strand 518s 518s Reading genotype data in [genotypes.chr22.vcf.gz] 518s * File format detected: VCF 518s * target region [chr22:16000000-19000000] 518s * 6404 variants included 518s 518s Reading covariates in [genes.covariates.pc50.txt.gz] 518s * 53 covariates included 518s 518s Residualize phenotypes for covariates 519s * #covariates = 53 519s 519s Processing phenotype [ENSG00000237438.2] [1/8] 519s * #variants in cis = 5095 519s * Best hit: [id=22_17542810, d=25350, pv=1.1864e-25, s=-0.7518] 519s 519s Processing phenotype [ENSG00000273203.1] [2/8] 519s * #variants in cis = 5170 519s * Best hit: [id=22_17517388, d=-31323, pv=5.86611e-06, s=-0.1406] 519s 519s Processing phenotype [ENSG00000273442.1] [3/8] 519s * #variants in cis = 5188 519s * Best hit: [id=22_17553526, d=-8065, pv=0.000244522, s=0.1340] 519s 519s Processing phenotype [ENSG00000177663.9] [4/8] 519s * #variants in cis = 5193 519s * Best hit: [id=22_17513703, d=-52141, pv=8.03358e-14, s=-0.2096] 519s 519s Processing phenotype [ENSG00000183307.3] [5/8] 519s * #variants in cis = 5230 519s * Best hit: [id=22_17587975, d=14282, pv=1.56789e-07, s=-0.0078] 519s 519s Processing phenotype [ENSG00000069998.8] [6/8] 519s * #variants in cis = 5291 519s * Best hit: [id=22_17620429, d=25748, pv=1.37287e-14, s=-1.5147] 519s 519s Processing phenotype [ENSG00000093072.11] [7/8] 519s * #variants in cis = 5293 519s * Best hit: [id=22_17699630, d=3249, pv=0.000578649, s=0.6404] 519s 519s Processing phenotype [ENSG00000099954.14] [8/8] 519s * #variants in cis = 5435 519s * Best hit: [id=22_17175937, d=-664900, pv=0.000866455, s=0.0067] 519s 519s Running time: 0 seconds 519s 519s QTLtools 519s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 519s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 519s * Webpage : https://qtltools.github.io/qtltools/ 519s * Version : 1.3.1 519s * Date : 10/08/2024 - 11:49:28 519s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 519s 519s MAPPING QTL IN CIS 519s * TASK: Perform 1000 permutations 519s * Linear model: Phe ~ Var + Cov 519s * Cis-window size is 1000000 bp 519s * Region = [chr22:17000000-18000000] 519s 519s Initialize random number generator 519s * Built-in seed is 15112011 519s * First Integer = 30553 519s * First Double = 0.0126695 519s 519s Reading sample list from [genes.50percent.chr22.bed.gz] 519s * #samples = 358 519s 519s Read sample list from [genotypes.chr22.vcf.gz] 519s * #samples = 358 519s 519s Reading sample list from [genes.covariates.pc50.txt.gz] 519s * #samples = 358 519s 519s Merging sample sets from all input files 519s * #files = 3 519s * #samples in all files = 358 519s 519s Reading phenotype data in [genes.50percent.chr22.bed.gz] 519s * target region [chr22:17000000-18000000] 519s * 8 phenotypes included 519s * 3 phenotypes are on the negative strand 519s 519s Reading genotype data in [genotypes.chr22.vcf.gz] 519s * File format detected: VCF 519s * target region [chr22:16000000-19000000] 519s * 6404 variants included 519s 519s Reading covariates in [genes.covariates.pc50.txt.gz] 519s * 53 covariates included 519s 519s Residualize phenotypes for covariates 519s * #covariates = 53 519s 519s Processing phenotype [ENSG00000237438.2] [1/8] 519s * #variants in cis = 5095 520s * Best hit: [id=22_17542810, d=25350, pv=1.1864e-25, s=-0.7518] 520s * Beta parameters: [s1=1.00995, s2=621.053] 520s * Adjusted p-values: [emp=0.000999001, beta=1.28062e-20] 520s 520s Processing phenotype [ENSG00000273203.1] [2/8] 520s * #variants in cis = 5170 521s * Best hit: [id=22_17517388, d=-31323, pv=5.86611e-06, s=-0.1406] 521s * Beta parameters: [s1=1.11817, s2=641.379] 521s * Adjusted p-values: [emp=0.00799201, beta=0.00751892] 521s 521s Processing phenotype [ENSG00000273442.1] [3/8] 521s * #variants in cis = 5188 522s * Best hit: [id=22_17553526, d=-8065, pv=0.000244522, s=0.1340] 522s * Beta parameters: [s1=1.08364, s2=467.63] 522s * Adjusted p-values: [emp=0.297702, beta=0.293948] 522s 522s Processing phenotype [ENSG00000177663.9] [4/8] 522s * #variants in cis = 5193 523s * Best hit: [id=22_17513703, d=-52141, pv=8.03358e-14, s=-0.2096] 523s * Beta parameters: [s1=0.989061, s2=704.553] 523s * Adjusted p-values: [emp=0.000999001, beta=7.91291e-10] 523s 523s Processing phenotype [ENSG00000183307.3] [5/8] 523s * #variants in cis = 5230 524s * Best hit: [id=22_17587975, d=14282, pv=1.56789e-07, s=-0.0078] 524s * Beta parameters: [s1=1.01322, s2=559.49] 524s * Adjusted p-values: [emp=0.000999001, beta=0.00050707] 524s 524s Processing phenotype [ENSG00000069998.8] [6/8] 524s * #variants in cis = 5291 526s * Best hit: [id=22_17620429, d=25748, pv=1.37287e-14, s=-1.5147] 526s * Beta parameters: [s1=1.02312, s2=563.339] 526s * Adjusted p-values: [emp=0.000999001, beta=2.56935e-10] 526s 526s Processing phenotype [ENSG00000093072.11] [7/8] 526s * #variants in cis = 5293 527s * Best hit: [id=22_17699630, d=3249, pv=0.000578649, s=0.6404] 527s * Beta parameters: [s1=0.957514, s2=559.397] 527s * Adjusted p-values: [emp=0.574426, beta=0.562826] 527s 527s Processing phenotype [ENSG00000099954.14] [8/8] 527s * #variants in cis = 5435 528s * Best hit: [id=22_17175937, d=-664900, pv=0.000866455, s=0.0067] 528s * Beta parameters: [s1=0.938041, s2=226.852] 528s * Adjusted p-values: [emp=0.842158, beta=0.84836] 528s 528s Running time: 9 seconds 528s 528s QTLtools 528s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 528s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 528s * Webpage : https://qtltools.github.io/qtltools/ 528s * Version : 1.3.1 528s * Date : 10/08/2024 - 11:49:37 528s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 528s 528s MAPPING QTL IN TRANS 528s * TASK: Perform a full nominal pass, do not adjust p-values 528s * Cis-window size is 5000000 bp 528s * #bins = 1000 528s * threshold = 1e-05 528s 528s Initialize random number generator 528s * Built-in seed is 15112011 528s * First Integer = 30553 528s * First Double = 0.0126695 528s 528s Read sample list from [genotypes.chr22.vcf.gz] 528s * #samples = 358 528s 528s Checking sample list in [genes.simulated.chr22.bed.gz] 528s * #samples = 358 528s 528s Reading phenotype data in [genes.simulated.chr22.bed.gz] from line 0 to 0 528s * 358 samples included 528s * 608 phenotypes included 528s * 275 phenotypes is on the negative strand 528s 528s Calculate correlation threshold 528s * thres = 1e-05 528s * corr = 0.2311 528s 528s Sweep through genotype data in [genotypes.chr22.vcf.gz] 528s * #variants=1950 #multi_allelic=0 #not_processed=0 #hits=101/1000000 speed=3.91MT/s 528s * #variants=4001 #multi_allelic=0 #not_processed=0 #hits=153/2000000 speed=3.89MT/s 529s * #variants=6187 #multi_allelic=0 #not_processed=0 #hits=244/3000000 speed=3.85MT/s 529s * #variants=8537 #multi_allelic=0 #not_processed=0 #hits=285/4000000 speed=3.79MT/s 529s * #variants=11025 #multi_allelic=0 #not_processed=0 #hits=312/5000000 speed=3.75MT/s 530s * #variants=13621 #multi_allelic=0 #not_processed=0 #hits=320/6000000 speed=3.73MT/s 530s * #variants=16217 #multi_allelic=0 #not_processed=0 #hits=342/7000000 speed=3.72MT/s 530s * #variants=18755 #multi_allelic=0 #not_processed=0 #hits=401/8000000 speed=3.73MT/s 530s * #variants=21237 #multi_allelic=0 #not_processed=0 #hits=402/9000000 speed=3.75MT/s 531s * #variants=23680 #multi_allelic=0 #not_processed=0 #hits=455/10000000 speed=3.76MT/s 531s * #variants=26171 #multi_allelic=0 #not_processed=0 #hits=463/11000000 speed=3.69MT/s 531s * #variants=28609 #multi_allelic=0 #not_processed=0 #hits=469/12000000 speed=3.76MT/s 531s * #variants=30861 #multi_allelic=0 #not_processed=0 #hits=973/13000000 speed=3.77MT/s 532s * #variants=32932 #multi_allelic=0 #not_processed=0 #hits=979/14000000 speed=3.86MT/s 532s * #variants=34974 #multi_allelic=0 #not_processed=0 #hits=1085/15000000 speed=3.88MT/s 532s * #variants=37021 #multi_allelic=0 #not_processed=0 #hits=1086/16000000 speed=3.89MT/s 532s * #variants=39122 #multi_allelic=0 #not_processed=0 #hits=1089/17000000 speed=3.86MT/s 533s * #variants=41334 #multi_allelic=0 #not_processed=0 #hits=1089/18000000 speed=3.83MT/s 533s * #variants=43627 #multi_allelic=0 #not_processed=0 #hits=1096/19000000 speed=3.80MT/s 533s * #variants=45897 #multi_allelic=0 #not_processed=0 #hits=1153/20000000 speed=3.80MT/s 533s * #variants=48114 #multi_allelic=0 #not_processed=0 #hits=1243/21000000 speed=3.82MT/s 534s * #variants=50410 #multi_allelic=0 #not_processed=0 #hits=1249/22000000 speed=3.80MT/s 534s * #variants=52820 #multi_allelic=0 #not_processed=0 #hits=1259/23000000 speed=3.77MT/s 534s * #variants=55279 #multi_allelic=0 #not_processed=0 #hits=1498/24000000 speed=3.73MT/s 535s * #variants=57789 #multi_allelic=0 #not_processed=0 #hits=1724/25000000 speed=3.72MT/s 535s * #variants=60201 #multi_allelic=0 #not_processed=0 #hits=2168/26000000 speed=3.72MT/s 535s * #variants=62476 #multi_allelic=0 #not_processed=0 #hits=2452/27000000 speed=3.79MT/s 535s * #variants=64608 #multi_allelic=0 #not_processed=0 #hits=2544/28000000 speed=3.85MT/s 536s * #variants=66709 #multi_allelic=0 #not_processed=0 #hits=2684/29000000 speed=3.85MT/s 536s * #variants=68871 #multi_allelic=0 #not_processed=0 #hits=2688/30000000 speed=3.85MT/s 536s * #variants=71070 #multi_allelic=0 #not_processed=0 #hits=2720/31000000 speed=3.83MT/s 536s * #variants=73151 #multi_allelic=0 #not_processed=0 #hits=2891/32000000 speed=3.85MT/s 537s * #variants=75122 #multi_allelic=0 #not_processed=0 #hits=3110/33000000 speed=3.88MT/s 537s * #variants=77058 #multi_allelic=0 #not_processed=0 #hits=3209/34000000 speed=3.82MT/s 537s * #variants=78989 #multi_allelic=0 #not_processed=0 #hits=3218/35000000 speed=3.88MT/s 537s * #variants=80903 #multi_allelic=0 #not_processed=0 #hits=3250/36000000 speed=3.91MT/s 538s * #variants=82811 #multi_allelic=0 #not_processed=0 #hits=3463/37000000 speed=3.89MT/s 538s * #variants=84694 #multi_allelic=0 #not_processed=0 #hits=4035/38000000 speed=3.86MT/s 538s * #variants=85485 #multi_allelic=0 #not_processed=0 #hits=4036/38425275 speed=3.94MT/s 538s 538s Running time: 10 seconds 538s 538s QTLtools 538s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 538s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 538s * Webpage : https://qtltools.github.io/qtltools/ 538s * Version : 1.3.1 538s * Date : 10/08/2024 - 11:49:47 538s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 538s 538s MAPPING QTL IN TRANS 538s * TASK: Permute randomly chosen phenotypes 1000 times and test 538s * Cis-window size is 5000000 bp 538s * #bins = 1000 538s * threshold = 1e-05 538s 538s Initialize random number generator 538s * Built-in seed is 15112011 538s * First Integer = 30553 538s * First Double = 0.0126695 538s 538s Read sample list from [genotypes.chr22.vcf.gz] 538s * #samples = 358 538s 538s Checking sample list in [genes.simulated.chr22.bed.gz] 538s * #samples = 358 538s 538s Reading phenotype data in [genes.simulated.chr22.bed.gz] from line 0 to 0 538s * 358 samples included 538s * 608 phenotypes included 538s * 275 phenotypes is on the negative strand 538s 538s Normal transform phenotypes 538s 538s Calculate correlation threshold 538s * thres = 1e-05 538s * corr = 0.2311 538s 538s Sweep through genotype data in [genotypes.chr22.vcf.gz] 538s * #variants=1177 #multi_allelic=0 #not_processed=0 #hits=28/1000000 speed=4.02MT/s 539s * #variants=2383 #multi_allelic=0 #not_processed=0 #hits=38/2000000 speed=3.98MT/s 539s * #variants=3633 #multi_allelic=0 #not_processed=0 #hits=53/3000000 speed=3.89MT/s 539s * #variants=4928 #multi_allelic=0 #not_processed=0 #hits=53/4000000 speed=3.91MT/s 539s * #variants=6269 #multi_allelic=0 #not_processed=0 #hits=71/5000000 speed=3.89MT/s 540s * #variants=7675 #multi_allelic=0 #not_processed=0 #hits=72/6000000 speed=3.83MT/s 540s * #variants=9151 #multi_allelic=0 #not_processed=0 #hits=88/7000000 speed=3.77MT/s 540s * #variants=10663 #multi_allelic=0 #not_processed=0 #hits=96/8000000 speed=3.76MT/s 541s * #variants=12202 #multi_allelic=0 #not_processed=0 #hits=96/9000000 speed=3.73MT/s 541s * #variants=13804 #multi_allelic=0 #not_processed=0 #hits=96/10000000 speed=3.69MT/s 541s * #variants=15381 #multi_allelic=0 #not_processed=0 #hits=120/11000000 speed=3.70MT/s 541s * #variants=16946 #multi_allelic=0 #not_processed=0 #hits=123/12000000 speed=3.72MT/s 542s * #variants=18483 #multi_allelic=0 #not_processed=0 #hits=129/13000000 speed=3.72MT/s 542s * #variants=19995 #multi_allelic=0 #not_processed=0 #hits=131/14000000 speed=3.75MT/s 542s * #variants=21489 #multi_allelic=0 #not_processed=0 #hits=132/15000000 speed=3.77MT/s 542s * #variants=22947 #multi_allelic=0 #not_processed=0 #hits=151/16000000 speed=3.79MT/s 543s * #variants=24445 #multi_allelic=0 #not_processed=0 #hits=168/17000000 speed=3.75MT/s 543s * #variants=25965 #multi_allelic=0 #not_processed=0 #hits=175/18000000 speed=3.75MT/s 543s * #variants=27472 #multi_allelic=0 #not_processed=0 #hits=179/19000000 speed=3.75MT/s 543s * #variants=28933 #multi_allelic=0 #not_processed=0 #hits=181/20000000 speed=3.76MT/s 544s * #variants=30325 #multi_allelic=0 #not_processed=0 #hits=181/21000000 speed=3.85MT/s 544s * #variants=31617 #multi_allelic=0 #not_processed=0 #hits=182/22000000 speed=3.92MT/s 544s * #variants=32875 #multi_allelic=0 #not_processed=0 #hits=190/23000000 speed=3.95MT/s 548s * #variants=34127 #multi_allelic=0 #not_processed=0 #hits=192/24000000 speed=3.97MT/s 548s * #variants=35392 #multi_allelic=0 #not_processed=0 #hits=206/25000000 speed=3.95MT/s 548s * #variants=36652 #multi_allelic=0 #not_processed=0 #hits=206/26000000 speed=3.97MT/s 548s * #variants=37940 #multi_allelic=0 #not_processed=0 #hits=213/27000000 speed=3.94MT/s 548s * #variants=39255 #multi_allelic=0 #not_processed=0 #hits=238/28000000 speed=3.91MT/s 548s * #variants=40602 #multi_allelic=0 #not_processed=0 #hits=239/29000000 speed=3.89MT/s 548s * #variants=41998 #multi_allelic=0 #not_processed=0 #hits=245/30000000 speed=3.85MT/s 548s * #variants=43398 #multi_allelic=0 #not_processed=0 #hits=245/31000000 speed=3.86MT/s 548s * #variants=44803 #multi_allelic=0 #not_processed=0 #hits=260/32000000 speed=3.83MT/s 548s * #variants=46187 #multi_allelic=0 #not_processed=0 #hits=261/33000000 speed=3.86MT/s 548s * #variants=47545 #multi_allelic=0 #not_processed=0 #hits=268/34000000 speed=3.79MT/s 548s * #variants=48904 #multi_allelic=0 #not_processed=0 #hits=280/35000000 speed=3.88MT/s 548s * #variants=50309 #multi_allelic=0 #not_processed=0 #hits=306/36000000 speed=3.83MT/s 548s * #variants=51731 #multi_allelic=0 #not_processed=0 #hits=314/37000000 speed=3.83MT/s 548s * #variants=53171 #multi_allelic=0 #not_processed=0 #hits=320/38000000 speed=3.80MT/s 548s * #variants=54621 #multi_allelic=0 #not_processed=0 #hits=323/39000000 speed=3.80MT/s 549s * #variants=56099 #multi_allelic=0 #not_processed=0 #hits=323/40000000 speed=3.77MT/s 549s * #variants=57584 #multi_allelic=0 #not_processed=0 #hits=340/41000000 speed=3.79MT/s 549s * #variants=59032 #multi_allelic=0 #not_processed=0 #hits=344/42000000 speed=3.82MT/s 549s * #variants=60437 #multi_allelic=0 #not_processed=0 #hits=345/43000000 speed=3.77MT/s 550s * #variants=61810 #multi_allelic=0 #not_processed=0 #hits=357/44000000 speed=3.70MT/s 550s * #variants=63129 #multi_allelic=0 #not_processed=0 #hits=384/45000000 speed=3.65MT/s 551s * #variants=64409 #multi_allelic=0 #not_processed=0 #hits=391/46000000 speed=3.65MT/s 551s * #variants=65679 #multi_allelic=0 #not_processed=0 #hits=430/47000000 speed=3.65MT/s 551s * #variants=66953 #multi_allelic=0 #not_processed=0 #hits=436/48000000 speed=3.68MT/s 551s * #variants=68247 #multi_allelic=0 #not_processed=0 #hits=446/49000000 speed=3.69MT/s 551s * #variants=69595 #multi_allelic=0 #not_processed=0 #hits=460/50000000 speed=3.72MT/s 552s * #variants=70918 #multi_allelic=0 #not_processed=0 #hits=481/51000000 speed=3.91MT/s 552s * #variants=72211 #multi_allelic=0 #not_processed=0 #hits=492/52000000 speed=3.92MT/s 552s * #variants=73449 #multi_allelic=0 #not_processed=0 #hits=492/53000000 speed=3.95MT/s 552s * #variants=74662 #multi_allelic=0 #not_processed=0 #hits=500/54000000 speed=3.98MT/s 553s * #variants=75863 #multi_allelic=0 #not_processed=0 #hits=506/55000000 speed=4.00MT/s 553s * #variants=77058 #multi_allelic=0 #not_processed=0 #hits=513/56000000 speed=4.02MT/s 553s * #variants=78253 #multi_allelic=0 #not_processed=0 #hits=515/57000000 speed=4.00MT/s 553s * #variants=79446 #multi_allelic=0 #not_processed=0 #hits=530/58000000 speed=4.00MT/s 554s * #variants=80634 #multi_allelic=0 #not_processed=0 #hits=581/59000000 speed=4.02MT/s 554s * #variants=81817 #multi_allelic=0 #not_processed=0 #hits=594/60000000 speed=4.02MT/s 554s * #variants=82993 #multi_allelic=0 #not_processed=0 #hits=598/61000000 speed=4.05MT/s 554s * #variants=84160 #multi_allelic=0 #not_processed=0 #hits=599/62000000 speed=4.05MT/s 555s * #variants=85304 #multi_allelic=0 #not_processed=0 #hits=609/63000000 speed=4.07MT/s 555s * #variants=85485 #multi_allelic=0 #not_processed=0 #hits=609/63157827 speed=4.15MT/s 555s 555s Running time: 16 seconds 555s autopkgtest [11:50:04]: test run-sample-analysis: -----------------------] 568s run-sample-analysis PASS 568s autopkgtest [11:50:17]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 590s autopkgtest [11:50:39]: @@@@@@@@@@@@@@@@@@@@ summary 590s run-sample-analysis PASS 615s nova [W] Using flock in scalingstack-bos01-ppc64el 615s Creating nova instance adt-noble-ppc64el-qtltools-20240810-114044-juju-7f2275-prod-proposed-migration-environment-3-b239d3df-3329-4afd-aa5b-13d0c7424017 from image adt/ubuntu-noble-ppc64el-server-20240810.img (UUID 442f0044-d1c8-4e4f-9a56-90ba78750726)...