0s autopkgtest [10:35:24]: starting date and time: 2024-08-19 10:35:24+0000 0s autopkgtest [10:35:24]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [10:35:24]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.txb3f7c3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:abinit --apt-upgrade abinit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=abinit/9.10.4-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-24.secgroup --name adt-oracular-amd64-abinit-20240819-103522-juju-7f2275-prod-proposed-migration-environment-2-6e1c577f-e54b-4605-a3d7-1fca9eea10bf --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 44s autopkgtest [10:36:08]: testbed dpkg architecture: amd64 44s autopkgtest [10:36:08]: testbed apt version: 2.9.8 44s autopkgtest [10:36:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 45s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [811 kB] 45s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [64.5 kB] 45s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [10.4 kB] 45s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8452 B] 45s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [67.9 kB] 45s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [125 kB] 45s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [3828 B] 45s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [35.2 kB] 45s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6300 B] 45s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [376 B] 45s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [195 kB] 45s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [759 kB] 45s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [21.0 kB] 45s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [12.8 kB] 45s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [4448 B] 45s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [532 B] 46s Fetched 2252 kB in 0s (4923 kB/s) 47s Reading package lists... 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 49s Calculating upgrade... 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 50s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s autopkgtest [10:36:18]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 54s autopkgtest [10:36:18]: @@@@@@@@@@@@@@@@@@@@ apt-source abinit 65s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe abinit 9.10.4-3 (dsc) [2464 B] 65s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe abinit 9.10.4-3 (tar) [131 MB] 65s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe abinit 9.10.4-3 (diff) [15.1 kB] 65s gpgv: Signature made Sun Feb 4 20:48:08 2024 UTC 65s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 65s gpgv: Can't check signature: No public key 65s dpkg-source: warning: cannot verify inline signature for ./abinit_9.10.4-3.dsc: no acceptable signature found 69s autopkgtest [10:36:33]: testing package abinit version 9.10.4-3 69s autopkgtest [10:36:33]: build not needed 73s autopkgtest [10:36:37]: test run-unit-test: preparing testbed 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s Starting pkgProblemResolver with broken count: 0 74s Starting 2 pkgProblemResolver with broken count: 0 74s Done 74s The following additional packages will be installed: 74s abinit abinit-data abinit-doc libaec0 libamd-comgr2 libamdhip64-5 libblas3 74s libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 74s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 74s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 74s libmunge2 libnetcdf19t64 libnetcdff7 libopenmpi3t64 libpciaccess0 74s libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libsz2 libucx0 libxc9 74s libxnvctrl0 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 74s python3-dateutil python3-numpy python3-pandas python3-pandas-lib python3-six 74s python3-tz 74s Suggested packages: 74s libhwloc-contrib-plugins opencl-icd gfortran | fortran-compiler gcc gfortran 74s python-numpy-doc python3-dev python3-pytest python-pandas-doc 74s python3-statsmodels 74s Recommended packages: 74s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 74s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 74s python3-tables python3-numba 74s The following NEW packages will be installed: 74s abinit abinit-data abinit-doc autopkgtest-satdep libaec0 libamd-comgr2 74s libamdhip64-5 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 74s libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 74s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 74s libllvm17t64 libmunge2 libnetcdf19t64 libnetcdff7 libopenmpi3t64 74s libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libsz2 74s libucx0 libxc9 libxnvctrl0 mpi-default-bin ocl-icd-libopencl1 openmpi-bin 74s openmpi-common python3-dateutil python3-numpy python3-pandas 74s python3-pandas-lib python3-six python3-tz 74s 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 150 MB/150 MB of archives. 74s After this operation, 666 MB of additional disk space will be used. 74s Get:1 /tmp/autopkgtest.ZXHIHs/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [736 B] 74s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 74s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.2.0-2ubuntu1 [910 kB] 74s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 75s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 75s Get:6 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 75s Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 75s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 75s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 75s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnetcdff7 amd64 4.6.0+really4.5.4+ds-3build2 [140 kB] 75s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 75s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 75s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 75s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 52.0-2 [70.7 kB] 75s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 75s Get:16 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 75s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 75s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 75s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 75s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 75s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 75s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 75s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-15 [26.0 MB] 75s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 75s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.122-1 [20.9 kB] 75s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 75s Get:27 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 75s Get:28 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-4build1 [9627 kB] 75s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libibumad3 amd64 52.0-2 [28.9 kB] 75s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libibmad5 amd64 52.0-2 [42.8 kB] 75s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 75s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 75s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxc9 amd64 5.2.3-1ubuntu1 [4007 kB] 75s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 75s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 75s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 mpi-default-bin amd64 1.15build1 [2376 B] 75s Get:37 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 abinit amd64 9.10.4-3 [34.6 MB] 76s Get:38 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 abinit-data all 9.10.4-3 [34.2 MB] 76s Get:39 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 abinit-doc all 9.10.4-3 [2301 kB] 76s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-six all 1.16.0-7 [13.1 kB] 76s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 76s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 76s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tz all 2024.1-2 [31.4 kB] 76s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB] 76s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB] 77s Fetched 150 MB in 2s (76.0 MB/s) 77s Selecting previously unselected package libblas3:amd64. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74252 files and directories currently installed.) 77s Preparing to unpack .../00-libblas3_3.12.0-3build2_amd64.deb ... 77s Unpacking libblas3:amd64 (3.12.0-3build2) ... 77s Selecting previously unselected package libgfortran5:amd64. 77s Preparing to unpack .../01-libgfortran5_14.2.0-2ubuntu1_amd64.deb ... 77s Unpacking libgfortran5:amd64 (14.2.0-2ubuntu1) ... 77s Selecting previously unselected package liblapack3:amd64. 77s Preparing to unpack .../02-liblapack3_3.12.0-3build2_amd64.deb ... 77s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 77s Selecting previously unselected package libaec0:amd64. 77s Preparing to unpack .../03-libaec0_1.1.3-1_amd64.deb ... 77s Unpacking libaec0:amd64 (1.1.3-1) ... 77s Selecting previously unselected package libsz2:amd64. 77s Preparing to unpack .../04-libsz2_1.1.3-1_amd64.deb ... 77s Unpacking libsz2:amd64 (1.1.3-1) ... 77s Selecting previously unselected package libhdf5-103-1t64:amd64. 77s Preparing to unpack .../05-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 77s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 77s Selecting previously unselected package libhdf5-hl-100t64:amd64. 77s Preparing to unpack .../06-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 77s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 77s Selecting previously unselected package libnetcdf19t64:amd64. 77s Preparing to unpack .../07-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 77s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 77s Selecting previously unselected package libnetcdff7:amd64. 77s Preparing to unpack .../08-libnetcdff7_4.6.0+really4.5.4+ds-3build2_amd64.deb ... 77s Unpacking libnetcdff7:amd64 (4.6.0+really4.5.4+ds-3build2) ... 77s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 77s Preparing to unpack .../09-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 77s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 77s Selecting previously unselected package libpsm-infinipath1. 77s Preparing to unpack .../10-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 77s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 77s Selecting previously unselected package libpsm2-2. 77s Preparing to unpack .../11-libpsm2-2_11.2.185-2.1_amd64.deb ... 77s Unpacking libpsm2-2 (11.2.185-2.1) ... 77s Selecting previously unselected package librdmacm1t64:amd64. 77s Preparing to unpack .../12-librdmacm1t64_52.0-2_amd64.deb ... 77s Unpacking librdmacm1t64:amd64 (52.0-2) ... 78s Selecting previously unselected package libfabric1:amd64. 78s Preparing to unpack .../13-libfabric1_1.17.0-3build2_amd64.deb ... 78s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 78s Selecting previously unselected package libhwloc15:amd64. 78s Preparing to unpack .../14-libhwloc15_2.10.0-1build1_amd64.deb ... 78s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 78s Selecting previously unselected package libmunge2:amd64. 78s Preparing to unpack .../15-libmunge2_0.5.15-4build1_amd64.deb ... 78s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 78s Selecting previously unselected package libpciaccess0:amd64. 78s Preparing to unpack .../16-libpciaccess0_0.17-3build1_amd64.deb ... 78s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 78s Selecting previously unselected package libxnvctrl0:amd64. 78s Preparing to unpack .../17-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 78s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 78s Selecting previously unselected package ocl-icd-libopencl1:amd64. 78s Preparing to unpack .../18-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 78s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 78s Selecting previously unselected package libhwloc-plugins:amd64. 78s Preparing to unpack .../19-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 78s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 78s Selecting previously unselected package libpmix2t64:amd64. 78s Preparing to unpack .../20-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 78s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 78s Selecting previously unselected package libllvm17t64:amd64. 78s Preparing to unpack .../21-libllvm17t64_1%3a17.0.6-15_amd64.deb ... 78s Unpacking libllvm17t64:amd64 (1:17.0.6-15) ... 78s Selecting previously unselected package libamd-comgr2:amd64. 78s Preparing to unpack .../22-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 78s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 79s Selecting previously unselected package libdrm-amdgpu1:amd64. 79s Preparing to unpack .../23-libdrm-amdgpu1_2.4.122-1_amd64.deb ... 79s Unpacking libdrm-amdgpu1:amd64 (2.4.122-1) ... 79s Selecting previously unselected package libhsakmt1:amd64. 79s Preparing to unpack .../24-libhsakmt1_5.7.0-1build1_amd64.deb ... 79s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 79s Selecting previously unselected package libhsa-runtime64-1. 79s Preparing to unpack .../25-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 79s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 79s Selecting previously unselected package libamdhip64-5. 79s Preparing to unpack .../26-libamdhip64-5_5.7.1-4build1_amd64.deb ... 79s Unpacking libamdhip64-5 (5.7.1-4build1) ... 79s Selecting previously unselected package libibumad3:amd64. 79s Preparing to unpack .../27-libibumad3_52.0-2_amd64.deb ... 79s Unpacking libibumad3:amd64 (52.0-2) ... 79s Selecting previously unselected package libibmad5:amd64. 79s Preparing to unpack .../28-libibmad5_52.0-2_amd64.deb ... 79s Unpacking libibmad5:amd64 (52.0-2) ... 79s Selecting previously unselected package libucx0:amd64. 79s Preparing to unpack .../29-libucx0_1.17.0+ds-3build1_amd64.deb ... 79s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 79s Selecting previously unselected package libopenmpi3t64:amd64. 79s Preparing to unpack .../30-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 79s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 79s Selecting previously unselected package libxc9:amd64. 79s Preparing to unpack .../31-libxc9_5.2.3-1ubuntu1_amd64.deb ... 79s Unpacking libxc9:amd64 (5.2.3-1ubuntu1) ... 79s Selecting previously unselected package openmpi-common. 79s Preparing to unpack .../32-openmpi-common_4.1.6-7ubuntu2_all.deb ... 79s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 79s Selecting previously unselected package openmpi-bin. 79s Preparing to unpack .../33-openmpi-bin_4.1.6-7ubuntu2_amd64.deb ... 79s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 79s Selecting previously unselected package mpi-default-bin. 79s Preparing to unpack .../34-mpi-default-bin_1.15build1_amd64.deb ... 79s Unpacking mpi-default-bin (1.15build1) ... 79s Selecting previously unselected package abinit. 79s Preparing to unpack .../35-abinit_9.10.4-3_amd64.deb ... 79s Unpacking abinit (9.10.4-3) ... 80s Selecting previously unselected package abinit-data. 80s Preparing to unpack .../36-abinit-data_9.10.4-3_all.deb ... 80s Unpacking abinit-data (9.10.4-3) ... 81s Selecting previously unselected package abinit-doc. 81s Preparing to unpack .../37-abinit-doc_9.10.4-3_all.deb ... 81s Unpacking abinit-doc (9.10.4-3) ... 81s Selecting previously unselected package python3-six. 81s Preparing to unpack .../38-python3-six_1.16.0-7_all.deb ... 81s Unpacking python3-six (1.16.0-7) ... 81s Selecting previously unselected package python3-dateutil. 81s Preparing to unpack .../39-python3-dateutil_2.9.0-2_all.deb ... 81s Unpacking python3-dateutil (2.9.0-2) ... 81s Selecting previously unselected package python3-numpy. 81s Preparing to unpack .../40-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 81s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 81s Selecting previously unselected package python3-tz. 81s Preparing to unpack .../41-python3-tz_2024.1-2_all.deb ... 81s Unpacking python3-tz (2024.1-2) ... 81s Selecting previously unselected package python3-pandas-lib:amd64. 81s Preparing to unpack .../42-python3-pandas-lib_2.2.2+dfsg-4_amd64.deb ... 81s Unpacking python3-pandas-lib:amd64 (2.2.2+dfsg-4) ... 82s Selecting previously unselected package python3-pandas. 82s Preparing to unpack .../43-python3-pandas_2.2.2+dfsg-4_all.deb ... 82s Unpacking python3-pandas (2.2.2+dfsg-4) ... 82s Selecting previously unselected package autopkgtest-satdep. 82s Preparing to unpack .../44-1-autopkgtest-satdep.deb ... 82s Unpacking autopkgtest-satdep (0) ... 82s Setting up libpciaccess0:amd64 (0.17-3build1) ... 82s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 82s Setting up abinit-doc (9.10.4-3) ... 82s Setting up libibumad3:amd64 (52.0-2) ... 82s Setting up libibmad5:amd64 (52.0-2) ... 82s Setting up abinit-data (9.10.4-3) ... 82s Setting up libaec0:amd64 (1.1.3-1) ... 82s Setting up python3-tz (2024.1-2) ... 82s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 82s Setting up python3-six (1.16.0-7) ... 82s Setting up libblas3:amd64 (3.12.0-3build2) ... 82s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 82s Setting up libmunge2:amd64 (0.5.15-4build1) ... 82s Setting up libllvm17t64:amd64 (1:17.0.6-15) ... 82s Setting up libhwloc15:amd64 (2.10.0-1build1) ... 82s Setting up libgfortran5:amd64 (14.2.0-2ubuntu1) ... 82s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 82s Setting up libpsm2-2 (11.2.185-2.1) ... 82s Setting up openmpi-common (4.1.6-7ubuntu2) ... 82s Setting up librdmacm1t64:amd64 (52.0-2) ... 82s Setting up python3-dateutil (2.9.0-2) ... 82s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 82s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 82s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 82s Setting up libsz2:amd64 (1.1.3-1) ... 82s Setting up libdrm-amdgpu1:amd64 (2.4.122-1) ... 82s Setting up libxc9:amd64 (5.2.3-1ubuntu1) ... 82s Setting up libfabric1:amd64 (1.17.0-3build2) ... 82s Setting up liblapack3:amd64 (3.12.0-3build2) ... 82s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 82s Setting up libhwloc-plugins:amd64 (2.10.0-1build1) ... 82s Setting up libpmix2t64:amd64 (5.0.1-4.1build1) ... 82s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 84s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 84s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 84s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 84s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 84s Setting up python3-pandas-lib:amd64 (2.2.2+dfsg-4) ... 84s Setting up python3-pandas (2.2.2+dfsg-4) ... 88s Setting up libnetcdff7:amd64 (4.6.0+really4.5.4+ds-3build2) ... 88s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 88s Setting up libamdhip64-5 (5.7.1-4build1) ... 88s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 88s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 88s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 88s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 88s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 88s Setting up mpi-default-bin (1.15build1) ... 88s Setting up abinit (9.10.4-3) ... 88s Setting up autopkgtest-satdep (0) ... 88s Processing triggers for man-db (2.12.1-3) ... 89s Processing triggers for libc-bin (2.39-0ubuntu9) ... 92s (Reading database ... 78606 files and directories currently installed.) 92s Removing autopkgtest-satdep (0) ... 92s autopkgtest [10:36:56]: test run-unit-test: [----------------------- 93s /tmp/autopkgtest.ZXHIHs/build.cJT/src/tests/__init__.py:231: SyntaxWarning: invalid escape sequence '\d' 93s pattern = re.compile("-?t" + name + "_\d+\.abi") 93s /tmp/autopkgtest.ZXHIHs/build.cJT/src/tests/__init__.py:722: SyntaxWarning: invalid escape sequence '\[' 93s re_slice = re.compile("^\[(\d*):(\d*)\]$") 93s /tmp/autopkgtest.ZXHIHs/build.cJT/src/tests/__init__.py:723: SyntaxWarning: invalid escape sequence '\[' 93s re_single = re.compile("^\[(\d*)\]$") 93s /tmp/autopkgtest.ZXHIHs/build.cJT/src/tests/pymods/xyaptu.py:37: SyntaxWarning: invalid escape sequence '\+' 93s _reOpen = re.compile('\++yaptu ') 93s /tmp/autopkgtest.ZXHIHs/build.cJT/src/tests/pymods/yaptu.py:96: SyntaxWarning: invalid escape sequence '\+' 93s rbe=re.compile('\+') 93s stty: 'standard input': Inappropriate ioctl for device 127s Running on autopkgtest -- system Linux -- ncpus 2 -- Python 3.12.5 -- runtests.py-0.6.0 127s Regenerating database... 127s Saving database to /tmp/autopkgtest.ZXHIHs/build.cJT/src/tests/test_suite.cpkl 127s /tmp/tmp.fH73frcn3y directory already exists. Files will be removed 127s Running 26 test(s) with MPI_procs: 1, py_nprocs: 1 127s [fast][t00][np=1][run_etime: 1.17 s]: succeeded [file=t00.abo] 127s [fast][t01][np=1][run_etime: 0.53 s]: succeeded [file=t01.abo] 127s [fast][t02][np=1][run_etime: 1.12 s]: succeeded [file=t02.abo] 127s [fast][t03][np=1][run_etime: 0.94 s]: succeeded [file=t03.abo] 127s [fast][t05][np=1][run_etime: 0.72 s]: succeeded [file=t05.abo] 127s [fast][t06][np=1][run_etime: 0.70 s]: succeeded [file=t06.abo] 127s [fast][t07][np=1][run_etime: 0.71 s]: succeeded [file=t07.abo] 127s [fast][t08][np=1][run_etime: 0.69 s]: succeeded [file=t08.abo] 127s [fast][t09][np=1][run_etime: 0.68 s]: succeeded [file=t09.abo] 127s [fast][t11][np=1][run_etime: 0.81 s]: succeeded [file=t11.abo] 127s [fast][t12][np=1][run_etime: 0.65 s]: succeeded [file=t12.abo] 127s [fast][t14][np=1][run_etime: 0.69 s]: passed: abs error 9.999e-07 < 1.1e-06, rel error 0.0003729 < 0.0004 [file=t14.abo] 127s [fast][t16][np=1][run_etime: 0.70 s]: succeeded [file=t16.abo] 127s [fast][t04][np=1][run_etime: 0.75 s]: succeeded [file=t04.abo] 127s [fast][t17][np=1][run_etime: 0.83 s]: succeeded [file=t17.abo] 127s [fast][t19][np=1][run_etime: 0.89 s]: succeeded [file=t19.abo] 127s [fast][t20][np=1][run_etime: 1.72 s]: succeeded [file=t20.abo] 127s [fast][t21][np=1][run_etime: 3.86 s]: succeeded [file=t21.abo] 127s [fast][t23][np=1][run_etime: 0.89 s]: succeeded [file=t23.abo] 127s [fast][t24][np=1][run_etime: 1.38 s]: succeeded [file=t24.abo] 127s [fast][t25][np=1][run_etime: 1.17 s]: passed: abs error 5.705e-09 < 7e-09, rel error 2.178e-10 < 3e-10 [file=t25.abo] 127s [fast][t26][np=1][run_etime: 1.18 s]: succeeded [file=t26.abo] 127s [fast][t27][np=1][run_etime: 1.34 s]: succeeded [file=t27.abo] 127s [fast][t28][np=1][run_etime: 2.14 s]: succeeded [file=t28.abo] 127s [fast][t28][np=1][run_etime: 2.14 s]: succeeded [file=t28o_TIM2_GEO] 127s [fast][t29][np=1][run_etime: 5.28 s]: succeeded [file=t29.abo] 127s [fast][t29][np=1][run_etime: 5.28 s]: succeeded [file=t29o_TIM8_GEO] 127s [fast][t30][np=1][run_etime: 0.89 s]: succeeded [file=t30.abo] 127s 127s Suite failed passed succeeded skipped disabled run_etime tot_etime 127s fast 0 2 9 0 0 32.44 32.65 127s 127s Completed in 32.94 [s]. Average time for test=2.95 [s], stdev=3.17 [s] 127s Summary: failed=0, succeeded=9, passed=2, skipped=0, disabled=0 127s 127s Execution completed. 127s Results in HTML format are available in /tmp/tmp.fH73frcn3y/suite_report.html 127s autopkgtest [10:37:31]: test run-unit-test: -----------------------] 127s autopkgtest [10:37:31]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 127s run-unit-test PASS 127s autopkgtest [10:37:31]: @@@@@@@@@@@@@@@@@@@@ summary 127s run-unit-test PASS 139s nova [W] Skipping flock for amd64 139s Creating nova instance adt-oracular-amd64-abinit-20240819-103522-juju-7f2275-prod-proposed-migration-environment-2-6e1c577f-e54b-4605-a3d7-1fca9eea10bf from image adt/ubuntu-oracular-amd64-server-20240819.img (UUID 41e630aa-84c9-4002-8d2a-8e083c456d73)...