0s autopkgtest [00:33:36]: starting date and time: 2024-05-25 00:33:36+0000 0s autopkgtest [00:33:36]: git checkout: 930f72e5 setup-testbed: don't install 'Recommends' for 'linux-generic' 0s autopkgtest [00:33:36]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j38z_zth/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade bmtk --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-50.secgroup --name adt-oracular-amd64-bmtk-20240525-003335-juju-7f2275-prod-proposed-migration-environment-3-5f09d01e-1cd9-4274-a69a-32da2a11f384 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 148s autopkgtest [00:36:04]: testbed dpkg architecture: amd64 148s autopkgtest [00:36:04]: testbed apt version: 2.9.3 148s autopkgtest [00:36:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 148s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 148s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3652 B] 148s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [499 kB] 148s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 148s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [56.1 kB] 148s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [132 kB] 149s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [171 kB] 149s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [7700 B] 149s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [208 kB] 149s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [557 kB] 149s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [1972 B] 149s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [1392 B] 149s Fetched 1714 kB in 0s (4891 kB/s) 149s Reading package lists... 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Calculating upgrade... 151s The following packages will be upgraded: 151s cloud-init libclang-cpp18 libclang1-18 libllvm18 login passwd 151s ubuntu-pro-client ubuntu-pro-client-l10n 151s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Need to get 50.7 MB of archives. 151s After this operation, 723 kB of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 login amd64 1:4.13+dfsg1-4ubuntu4 [201 kB] 151s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu4 [844 kB] 151s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-pro-client-l10n amd64 32.2 [19.4 kB] 151s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-pro-client amd64 32.2 [229 kB] 151s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libclang-cpp18 amd64 1:18.1.6-1 [13.5 MB] 152s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm18 amd64 1:18.1.6-1 [27.5 MB] 152s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libclang1-18 amd64 1:18.1.6-1 [7804 kB] 152s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 cloud-init all 24.2~3ge68c8c74-0ubuntu1 [606 kB] 152s Preconfiguring packages ... 152s Fetched 50.7 MB in 0s (108 MB/s) 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74358 files and directories currently installed.) 153s Preparing to unpack .../login_1%3a4.13+dfsg1-4ubuntu4_amd64.deb ... 153s Unpacking login (1:4.13+dfsg1-4ubuntu4) over (1:4.13+dfsg1-4ubuntu3) ... 153s Setting up login (1:4.13+dfsg1-4ubuntu4) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74358 files and directories currently installed.) 153s Preparing to unpack .../passwd_1%3a4.13+dfsg1-4ubuntu4_amd64.deb ... 153s Unpacking passwd (1:4.13+dfsg1-4ubuntu4) over (1:4.13+dfsg1-4ubuntu3) ... 153s Setting up passwd (1:4.13+dfsg1-4ubuntu4) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74358 files and directories currently installed.) 153s Preparing to unpack .../0-ubuntu-pro-client-l10n_32.2_amd64.deb ... 153s Unpacking ubuntu-pro-client-l10n (32.2) over (32.1) ... 153s Preparing to unpack .../1-ubuntu-pro-client_32.2_amd64.deb ... 153s Unpacking ubuntu-pro-client (32.2) over (32.1) ... 153s Preparing to unpack .../2-libclang-cpp18_1%3a18.1.6-1_amd64.deb ... 153s Unpacking libclang-cpp18 (1:18.1.6-1) over (1:18.1.3-1) ... 154s Preparing to unpack .../3-libllvm18_1%3a18.1.6-1_amd64.deb ... 154s Unpacking libllvm18:amd64 (1:18.1.6-1) over (1:18.1.3-1) ... 155s Preparing to unpack .../4-libclang1-18_1%3a18.1.6-1_amd64.deb ... 155s Unpacking libclang1-18 (1:18.1.6-1) over (1:18.1.3-1) ... 155s Preparing to unpack .../5-cloud-init_24.2~3ge68c8c74-0ubuntu1_all.deb ... 155s Unpacking cloud-init (24.2~3ge68c8c74-0ubuntu1) over (24.2~2g51c6569f-0ubuntu1) ... 155s Setting up cloud-init (24.2~3ge68c8c74-0ubuntu1) ... 157s Setting up ubuntu-pro-client (32.2) ... 157s Installing new version of config file /etc/apparmor.d/ubuntu_pro_esm_cache ... 159s Setting up libllvm18:amd64 (1:18.1.6-1) ... 159s Setting up ubuntu-pro-client-l10n (32.2) ... 159s Setting up libclang1-18 (1:18.1.6-1) ... 159s Setting up libclang-cpp18 (1:18.1.6-1) ... 159s Processing triggers for rsyslog (8.2312.0-3ubuntu9) ... 159s Processing triggers for man-db (2.12.1-1) ... 161s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 162s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 162s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 162s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 164s Reading package lists... 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s Calculating upgrade... 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s autopkgtest [00:36:21]: rebooting testbed after setup commands that affected boot 169s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 180s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 184s autopkgtest [00:36:40]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 185s autopkgtest [00:36:41]: @@@@@@@@@@@@@@@@@@@@ apt-source bmtk 188s Get:1 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (dsc) [2822 B] 188s Get:2 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (tar) [61.4 MB] 188s Get:3 http://ftpmaster.internal/ubuntu oracular/universe bmtk 1.1.0+ds-1 (diff) [9240 B] 188s gpgv: Signature made Wed Apr 24 10:27:34 2024 UTC 188s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 188s gpgv: issuer "emollier@debian.org" 188s gpgv: Can't check signature: No public key 188s dpkg-source: warning: cannot verify inline signature for ./bmtk_1.1.0+ds-1.dsc: no acceptable signature found 191s autopkgtest [00:36:47]: testing package bmtk version 1.1.0+ds-1 191s autopkgtest [00:36:47]: build not needed 192s autopkgtest [00:36:48]: test run-unit-test: preparing testbed 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 194s The following additional packages will be installed: 194s blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 libamd-comgr2 194s libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 194s libfabric1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 194s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 194s libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui 194s libjs-mathjax libjs-requirejs libjs-sphinxdoc libjs-underscore liblapack3 194s liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 libmunge2 libopenjp2-7 194s libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 194s libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 libtcl8.6 libtk8.6 libucx0 194s libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 194s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 194s python-matplotlib-data python3-all python3-appdirs python3-bmtk 194s python3-bmtk-doc python3-bmtk-examples python3-brotli python3-contourpy 194s python3-cycler python3-dateutil python3-decorator python3-fonttools 194s python3-fs python3-h5py python3-h5py-serial python3-imageio 194s python3-iniconfig python3-kiwisolver python3-lazy-loader python3-lxml 194s python3-lz4 python3-matplotlib python3-mpi4py python3-mpmath 194s python3-networkx python3-numpy python3-packaging python3-pandas 194s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 194s python3-pytest python3-scipy python3-skimage python3-skimage-lib 194s python3-sympy python3-tifffile python3-tk python3-ufolib2 194s python3-unicodedata2 tk8.6-blt2.5 unicode-data x11-common 194s Suggested packages: 194s blt-demo libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 194s fonts-stix libjs-mathjax-doc liblcms2-utils tcl8.6 tk8.6 opencl-icd gfortran 194s | fortran-compiler python-cycler-doc python-h5py-doc python-imageio-doc 194s python3-astropy python3-gdal ffmpeg python-lxml-doc cm-super-minimal dvipng 194s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 194s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 194s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 194s python3-gmpy2 python-networkx-doc python3-pydot python3-pygraphviz gcc 194s gfortran python3-dev python-pandas-doc python3-statsmodels python-pil-doc 194s python-scipy-doc python-skimage-doc texlive-fonts-extra python-sympy-doc 194s python3-fsspec tix python3-tk-dbg 194s Recommended packages: 194s javascript-common python3-neuron python3-bs4 python3-cssselect 194s python3-html5lib python3-bottleneck python3-numexpr python3-odf 194s python3-openpyxl python3-tables python3-numba python3-olefile g++ 194s | c++-compiler python3-dask isympy-common 194s The following NEW packages will be installed: 194s autopkgtest-satdep blt fonts-bebas-neue fonts-lyx fonts-mathjax libaec0 194s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 194s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libgraphite2-3 194s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 194s libhsakmt1 libhwloc-plugins libhwloc15 libimagequant0 libjs-jquery 194s libjs-jquery-ui libjs-mathjax libjs-requirejs libjs-sphinxdoc 194s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libllvm17t64 liblzf1 194s libmunge2 libopenjp2-7 libopenmpi3t64 libpciaccess0 libpmix2t64 194s libpsm-infinipath1 libpsm2-2 libqhull-r8.0 libraqm0 librdmacm1t64 libsz2 194s libtcl8.6 libtk8.6 libucx0 libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 194s libxrender1 libxslt1.1 libxss1 mpi-default-bin ocl-icd-libopencl1 194s openmpi-bin openmpi-common python-matplotlib-data python3-all 194s python3-appdirs python3-bmtk python3-bmtk-doc python3-bmtk-examples 194s python3-brotli python3-contourpy python3-cycler python3-dateutil 194s python3-decorator python3-fonttools python3-fs python3-h5py 194s python3-h5py-serial python3-imageio python3-iniconfig python3-kiwisolver 194s python3-lazy-loader python3-lxml python3-lz4 python3-matplotlib 194s python3-mpi4py python3-mpmath python3-networkx python3-numpy 194s python3-packaging python3-pandas python3-pandas-lib python3-pil 194s python3-pil.imagetk python3-pluggy python3-pytest python3-scipy 194s python3-skimage python3-skimage-lib python3-sympy python3-tifffile 194s python3-tk python3-ufolib2 python3-unicodedata2 tk8.6-blt2.5 unicode-data 194s x11-common 194s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 243 MB/243 MB of archives. 194s After this operation, 859 MB of additional disk space will be used. 194s Get:1 /tmp/autopkgtest.iyRtfX/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [740 B] 194s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 194s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 194s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 194s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 194s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 194s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 194s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 194s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 194s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-bebas-neue all 3.0-2 [94.6 kB] 194s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0~RC4-1 [170 kB] 194s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 194s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 194s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 194s Get:15 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 194s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.120-2build1 [20.2 kB] 194s Get:17 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 194s Get:18 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 194s Get:19 http://ftpmaster.internal/ubuntu oracular/universe amd64 libamdhip64-5 amd64 5.7.1-3 [9621 kB] 195s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 195s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 195s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 195s Get:23 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 195s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpsm2-2 amd64 11.2.185-2build1 [194 kB] 195s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 librdmacm1t64 amd64 50.0-2build2 [70.7 kB] 195s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 195s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 195s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 195s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB] 195s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 195s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 195s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 195s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 195s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc15 amd64 2.10.0-1build1 [172 kB] 195s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 195s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 195s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 195s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 195s Get:39 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] 195s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 195s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 195s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 195s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 195s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 195s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 195s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 195s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 195s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhwloc-plugins amd64 2.10.0-1build1 [15.7 kB] 195s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpmix2t64 amd64 5.0.1-4.1build1 [697 kB] 195s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libucx0 amd64 1.16.0+ds-5ubuntu1 [1140 kB] 195s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 195s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 195s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 195s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 195s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 195s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 195s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 195s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 195s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-1ubuntu5 [2936 kB] 195s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 195s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 195s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-6ubuntu1 [4437 kB] 195s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 195s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 195s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 195s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 195s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB] 195s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 195s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B] 195s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 195s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 195s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 195s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 195s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.11.4-10 [15.5 MB] 195s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 195s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 195s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB] 195s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 195s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 195s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 195s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 195s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 195s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 195s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 195s Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 195s Get:86 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-1ubuntu5 [6079 kB] 195s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 195s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 195s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 2.8.8-1ubuntu1 [1468 kB] 195s Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage-lib amd64 0.22.0-3ubuntu1 [2260 kB] 195s Get:91 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-imageio all 2.34.1-1 [233 kB] 195s Get:92 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lazy-loader all 0.3-1 [9530 B] 195s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tifffile all 20240522-1 [175 kB] 195s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skimage all 0.22.0-3ubuntu1 [21.5 MB] 195s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk amd64 1.1.0+ds-1 [572 kB] 195s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 195s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-requirejs all 2.3.6+ds+~2.1.34-2 [201 kB] 195s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-doc all 1.1.0+ds-1 [52.8 MB] 196s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bmtk-examples all 1.1.0+ds-1 [32.6 MB] 196s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 196s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 196s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 196s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 mpi-default-bin amd64 1.15build1 [2376 B] 196s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpi4py amd64 3.1.6-1 [466 kB] 197s Fetched 243 MB in 2s (107 MB/s) 197s Selecting previously unselected package libtcl8.6:amd64. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74360 files and directories currently installed.) 197s Preparing to unpack .../000-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 197s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 197s Selecting previously unselected package libxrender1:amd64. 197s Preparing to unpack .../001-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 197s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 197s Selecting previously unselected package libxft2:amd64. 197s Preparing to unpack .../002-libxft2_2.3.6-1build1_amd64.deb ... 197s Unpacking libxft2:amd64 (2.3.6-1build1) ... 197s Selecting previously unselected package x11-common. 197s Preparing to unpack .../003-x11-common_1%3a7.7+23ubuntu3_all.deb ... 197s Unpacking x11-common (1:7.7+23ubuntu3) ... 197s Selecting previously unselected package libxss1:amd64. 197s Preparing to unpack .../004-libxss1_1%3a1.2.3-1build3_amd64.deb ... 197s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 197s Selecting previously unselected package libtk8.6:amd64. 197s Preparing to unpack .../005-libtk8.6_8.6.14-1build1_amd64.deb ... 197s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 197s Selecting previously unselected package tk8.6-blt2.5. 197s Preparing to unpack .../006-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 197s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 197s Selecting previously unselected package blt. 198s Preparing to unpack .../007-blt_2.5.3+dfsg-7build1_amd64.deb ... 198s Unpacking blt (2.5.3+dfsg-7build1) ... 198s Selecting previously unselected package fonts-bebas-neue. 198s Preparing to unpack .../008-fonts-bebas-neue_3.0-2_all.deb ... 198s Unpacking fonts-bebas-neue (3.0-2) ... 198s Selecting previously unselected package fonts-lyx. 198s Preparing to unpack .../009-fonts-lyx_2.4.0~RC4-1_all.deb ... 198s Unpacking fonts-lyx (2.4.0~RC4-1) ... 198s Selecting previously unselected package fonts-mathjax. 198s Preparing to unpack .../010-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 198s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 198s Selecting previously unselected package libaec0:amd64. 198s Preparing to unpack .../011-libaec0_1.1.3-1_amd64.deb ... 198s Unpacking libaec0:amd64 (1.1.3-1) ... 198s Selecting previously unselected package libllvm17t64:amd64. 198s Preparing to unpack .../012-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 198s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 199s Selecting previously unselected package libamd-comgr2:amd64. 199s Preparing to unpack .../013-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 199s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 199s Selecting previously unselected package libdrm-amdgpu1:amd64. 199s Preparing to unpack .../014-libdrm-amdgpu1_2.4.120-2build1_amd64.deb ... 199s Unpacking libdrm-amdgpu1:amd64 (2.4.120-2build1) ... 199s Selecting previously unselected package libhsakmt1:amd64. 199s Preparing to unpack .../015-libhsakmt1_5.7.0-1build1_amd64.deb ... 199s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 199s Selecting previously unselected package libhsa-runtime64-1. 199s Preparing to unpack .../016-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 199s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 199s Selecting previously unselected package libamdhip64-5. 199s Preparing to unpack .../017-libamdhip64-5_5.7.1-3_amd64.deb ... 199s Unpacking libamdhip64-5 (5.7.1-3) ... 199s Selecting previously unselected package libatomic1:amd64. 199s Preparing to unpack .../018-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 199s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 199s Selecting previously unselected package libblas3:amd64. 199s Preparing to unpack .../019-libblas3_3.12.0-3build1_amd64.deb ... 199s Unpacking libblas3:amd64 (3.12.0-3build1) ... 199s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 199s Preparing to unpack .../020-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 199s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 199s Selecting previously unselected package libpsm-infinipath1. 199s Preparing to unpack .../021-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 199s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 199s Selecting previously unselected package libpsm2-2. 199s Preparing to unpack .../022-libpsm2-2_11.2.185-2build1_amd64.deb ... 199s Unpacking libpsm2-2 (11.2.185-2build1) ... 199s Selecting previously unselected package librdmacm1t64:amd64. 199s Preparing to unpack .../023-librdmacm1t64_50.0-2build2_amd64.deb ... 199s Unpacking librdmacm1t64:amd64 (50.0-2build2) ... 199s Selecting previously unselected package libfabric1:amd64. 199s Preparing to unpack .../024-libfabric1_1.17.0-3build2_amd64.deb ... 199s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 199s Selecting previously unselected package libgfortran5:amd64. 199s Preparing to unpack .../025-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 199s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 199s Selecting previously unselected package libgomp1:amd64. 199s Preparing to unpack .../026-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 199s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 199s Selecting previously unselected package libgraphite2-3:amd64. 199s Preparing to unpack .../027-libgraphite2-3_1.3.14-2build1_amd64.deb ... 199s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ... 199s Selecting previously unselected package libharfbuzz0b:amd64. 199s Preparing to unpack .../028-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 199s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 199s Selecting previously unselected package libsz2:amd64. 200s Preparing to unpack .../029-libsz2_1.1.3-1_amd64.deb ... 200s Unpacking libsz2:amd64 (1.1.3-1) ... 200s Selecting previously unselected package libhdf5-103-1t64:amd64. 200s Preparing to unpack .../030-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 200s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 200s Selecting previously unselected package libhdf5-hl-100t64:amd64. 200s Preparing to unpack .../031-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 200s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 200s Selecting previously unselected package libhwloc15:amd64. 200s Preparing to unpack .../032-libhwloc15_2.10.0-1build1_amd64.deb ... 200s Unpacking libhwloc15:amd64 (2.10.0-1build1) ... 200s Selecting previously unselected package libimagequant0:amd64. 200s Preparing to unpack .../033-libimagequant0_2.18.0-1build1_amd64.deb ... 200s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 200s Selecting previously unselected package libjs-jquery. 200s Preparing to unpack .../034-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 200s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 200s Selecting previously unselected package libjs-jquery-ui. 200s Preparing to unpack .../035-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 200s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 200s Selecting previously unselected package libjs-underscore. 200s Preparing to unpack .../036-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 200s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 200s Selecting previously unselected package libjs-sphinxdoc. 200s Preparing to unpack .../037-libjs-sphinxdoc_7.2.6-8_all.deb ... 200s Unpacking libjs-sphinxdoc (7.2.6-8) ... 200s Selecting previously unselected package liblapack3:amd64. 200s Preparing to unpack .../038-liblapack3_3.12.0-3build1_amd64.deb ... 200s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 200s Selecting previously unselected package liblbfgsb0:amd64. 200s Preparing to unpack .../039-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 200s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 200s Selecting previously unselected package liblcms2-2:amd64. 200s Preparing to unpack .../040-liblcms2-2_2.14-2build1_amd64.deb ... 200s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 200s Selecting previously unselected package liblzf1:amd64. 200s Preparing to unpack .../041-liblzf1_3.6-4_amd64.deb ... 200s Unpacking liblzf1:amd64 (3.6-4) ... 200s Selecting previously unselected package libmunge2:amd64. 200s Preparing to unpack .../042-libmunge2_0.5.15-4build1_amd64.deb ... 200s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 200s Selecting previously unselected package libpciaccess0:amd64. 200s Preparing to unpack .../043-libpciaccess0_0.17-3build1_amd64.deb ... 200s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 200s Selecting previously unselected package libxnvctrl0:amd64. 200s Preparing to unpack .../044-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 200s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 200s Selecting previously unselected package ocl-icd-libopencl1:amd64. 200s Preparing to unpack .../045-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 200s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 200s Selecting previously unselected package libhwloc-plugins:amd64. 200s Preparing to unpack .../046-libhwloc-plugins_2.10.0-1build1_amd64.deb ... 200s Unpacking libhwloc-plugins:amd64 (2.10.0-1build1) ... 200s Selecting previously unselected package libpmix2t64:amd64. 200s Preparing to unpack .../047-libpmix2t64_5.0.1-4.1build1_amd64.deb ... 200s Unpacking libpmix2t64:amd64 (5.0.1-4.1build1) ... 200s Selecting previously unselected package libucx0:amd64. 200s Preparing to unpack .../048-libucx0_1.16.0+ds-5ubuntu1_amd64.deb ... 200s Unpacking libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 200s Selecting previously unselected package libopenmpi3t64:amd64. 200s Preparing to unpack .../049-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 200s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 200s Selecting previously unselected package libqhull-r8.0:amd64. 200s Preparing to unpack .../050-libqhull-r8.0_2020.2-6build1_amd64.deb ... 200s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 200s Selecting previously unselected package libraqm0:amd64. 200s Preparing to unpack .../051-libraqm0_0.10.1-1build1_amd64.deb ... 200s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 201s Selecting previously unselected package libwebpdemux2:amd64. 201s Preparing to unpack .../052-libwebpdemux2_1.4.0-0.1_amd64.deb ... 201s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 201s Selecting previously unselected package libwebpmux3:amd64. 201s Preparing to unpack .../053-libwebpmux3_1.4.0-0.1_amd64.deb ... 201s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 201s Selecting previously unselected package libxslt1.1:amd64. 201s Preparing to unpack .../054-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 201s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 201s Selecting previously unselected package openmpi-common. 201s Preparing to unpack .../055-openmpi-common_4.1.6-7ubuntu2_all.deb ... 201s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 201s Selecting previously unselected package openmpi-bin. 201s Preparing to unpack .../056-openmpi-bin_4.1.6-7ubuntu2_amd64.deb ... 201s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 201s Selecting previously unselected package python-matplotlib-data. 201s Preparing to unpack .../057-python-matplotlib-data_3.6.3-1ubuntu5_all.deb ... 201s Unpacking python-matplotlib-data (3.6.3-1ubuntu5) ... 201s Selecting previously unselected package python3-all. 201s Preparing to unpack .../058-python3-all_3.12.3-0ubuntu1_amd64.deb ... 201s Unpacking python3-all (3.12.3-0ubuntu1) ... 201s Selecting previously unselected package python3-appdirs. 201s Preparing to unpack .../059-python3-appdirs_1.4.4-4_all.deb ... 201s Unpacking python3-appdirs (1.4.4-4) ... 201s Selecting previously unselected package python3-numpy. 201s Preparing to unpack .../060-python3-numpy_1%3a1.26.4+ds-6ubuntu1_amd64.deb ... 201s Unpacking python3-numpy (1:1.26.4+ds-6ubuntu1) ... 201s Selecting previously unselected package python3-h5py-serial. 201s Preparing to unpack .../061-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 201s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 201s Selecting previously unselected package python3-h5py. 201s Preparing to unpack .../062-python3-h5py_3.10.0-1ubuntu3_all.deb ... 201s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 201s Selecting previously unselected package python3-dateutil. 201s Preparing to unpack .../063-python3-dateutil_2.9.0-2_all.deb ... 201s Unpacking python3-dateutil (2.9.0-2) ... 201s Selecting previously unselected package libopenjp2-7:amd64. 201s Preparing to unpack .../064-libopenjp2-7_2.5.0-2build3_amd64.deb ... 201s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 201s Selecting previously unselected package python3-pil:amd64. 201s Preparing to unpack .../065-python3-pil_10.3.0-2_amd64.deb ... 201s Unpacking python3-pil:amd64 (10.3.0-2) ... 201s Selecting previously unselected package python3-tk:amd64. 201s Preparing to unpack .../066-python3-tk_3.12.3-0ubuntu1_amd64.deb ... 201s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ... 201s Selecting previously unselected package python3-pil.imagetk:amd64. 201s Preparing to unpack .../067-python3-pil.imagetk_10.3.0-2_amd64.deb ... 201s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... 201s Selecting previously unselected package python3-contourpy. 201s Preparing to unpack .../068-python3-contourpy_1.0.7-3_amd64.deb ... 201s Unpacking python3-contourpy (1.0.7-3) ... 201s Selecting previously unselected package python3-cycler. 201s Preparing to unpack .../069-python3-cycler_0.12.1-1_all.deb ... 201s 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/usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 209s Setting up python3-packaging (24.0-1) ... 209s Setting up libmunge2:amd64 (0.5.15-4build1) ... 209s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 209s Setting up python3-brotli (1.1.0-2build2) ... 210s Setting up liblzf1:amd64 (3.6-4) ... 210s Setting up python3-cycler (0.12.1-1) ... 210s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 210s Setting up python3-kiwisolver (1.4.5-1) ... 210s Setting up libhwloc15:amd64 (2.10.0-1build1) ... 210s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 210s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 210s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 210s Setting up python3-pluggy (1.5.0-1) ... 210s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 210s Setting up fonts-bebas-neue (3.0-2) ... 210s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 210s Setting up libpsm2-2 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libjs-sphinxdoc (7.2.6-8) ... 221s Setting up python3-lxml:amd64 (5.2.1-1) ... 221s Setting up python3-contourpy (1.0.7-3) ... 221s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 221s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 221s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 221s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 221s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 221s Setting up python3-scipy (1.11.4-10) ... 225s Setting up python3-skimage-lib:amd64 (0.22.0-3ubuntu1) ... 225s Setting up python3-bmtk-doc (1.1.0+ds-1) ... 225s Setting up blt (2.5.3+dfsg-7build1) ... 225s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 225s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 225s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 225s Setting up python3-tifffile (20240522-1) ... 226s Setting up python3-pil:amd64 (10.3.0-2) ... 226s Setting up python3-pandas (2.1.4+dfsg-8) ... 231s Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... 231s Setting up python3-h5py (3.10.0-1ubuntu3) ... 232s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 232s Setting up python3-imageio (2.34.1-1) ... 232s Setting up libamdhip64-5 (5.7.1-3) ... 232s Setting up libucx0:amd64 (1.16.0+ds-5ubuntu1) ... 232s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 232s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 232s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 232s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 232s Setting up mpi-default-bin (1.15build1) ... 232s Setting up python3-mpi4py (3.1.6-1) ... 232s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 232s Setting up python3-fonttools (4.46.0-1build2) ... 233s Setting up python3-matplotlib (3.6.3-1ubuntu5) ... 235s Setting up python3-skimage (0.22.0-3ubuntu1) ... 236s Setting up python3-bmtk (1.1.0+ds-1) ... 236s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:177: SyntaxWarning: invalid escape sequence '\s' 236s headers = pd.read_csv(comsol_file, sep="\s{3,}", header=None, skiprows=8, nrows=1, engine='python') 236s /usr/lib/python3/dist-packages/bmtk/simulator/bionet/modules/comsol.py:179: SyntaxWarning: invalid escape sequence '\s' 236s data = pd.read_csv(comsol_file, sep="\s+", header=None, skiprows=9) 237s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: SyntaxWarning: invalid escape sequence '\D' 237s gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x)) 237s /usr/lib/python3/dist-packages/bmtk/utils/io/cell_vars.py:19: SyntaxWarning: invalid escape sequence '\*' 237s """A small struct to keep track of different \*/data (and buffer) tables""" 237s /usr/lib/python3/dist-packages/bmtk/utils/sonata/config/sonata_config.py:400: SyntaxWarning: invalid escape sequence '\$' 237s variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)] 237s Setting up autopkgtest-satdep (0) ... 237s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 237s Processing triggers for man-db (2.12.1-1) ... 243s (Reading database ... 91613 files and directories currently installed.) 243s Removing autopkgtest-satdep (0) ... 243s autopkgtest [00:37:39]: test run-unit-test: [----------------------- 244s ============================= test session starts ============================== 244s platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 244s cachedir: .pytest_cache 244s rootdir: /tmp/autopkgtest.iyRtfX/autopkgtest_tmp 248s collecting ... collected 360 items / 5 skipped 248s 248s tests/builder/test_connection_map.py::test_connection_map_fnc PASSED [ 0%] 248s tests/builder/test_connection_map.py::test_connection_map_num PASSED [ 0%] 248s tests/builder/test_connection_map.py::test_connection_map_list PASSED [ 0%] 248s 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tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups1] PASSED [ 66%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups2] PASSED [ 67%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-None] PASSED [ 67%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups1] PASSED [ 67%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups2] PASSED [ 68%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-None] PASSED [ 68%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups1] PASSED [ 68%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups2] PASSED [ 68%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-None] PASSED [ 69%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups1] PASSED [ 69%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups2] PASSED [ 69%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[None] PASSED [ 70%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups1] PASSED [ 70%] 260s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups2] PASSED [ 70%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STMemoryBuffer] PASSED [ 70%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STCSVBuffer] PASSED [ 71%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STMemoryBuffer] PASSED [ 71%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STCSVBuffer] PASSED [ 71%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STMemoryBuffer] PASSED [ 71%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STCSVBuffer] PASSED [ 72%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STMemoryBuffer] PASSED [ 72%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STCSVBuffer] PASSED [ 72%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STMemoryBuffer] PASSED [ 73%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STCSVBuffer] PASSED [ 73%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STMemoryBuffer] PASSED [ 73%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STCSVBuffer] PASSED [ 73%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STMemoryBuffer] PASSED [ 74%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STCSVBuffer] PASSED [ 74%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STMemoryBuffer] PASSED [ 74%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STCSVBuffer] PASSED [ 75%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STMemoryBuffer] PASSED [ 75%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STCSVBuffer] PASSED [ 75%] 260s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STMemoryBuffer] PASSED [ 75%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STCSVBuffer] PASSED [ 76%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STMemoryBuffer] PASSED [ 76%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STCSVBuffer] PASSED [ 76%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STMemoryBuffer] PASSED [ 76%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STCSVBuffer] PASSED [ 77%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader PASSED [ 77%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader PASSED [ 77%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_load_sonata PASSED [ 78%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STMPIBuffer] PASSED [ 78%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STCSVMPIBufferV2] PASSED [ 78%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STMPIBuffer] PASSED [ 78%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 79%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STMPIBuffer] PASSED [ 79%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STCSVMPIBufferV2] PASSED [ 79%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STMPIBuffer] PASSED [ 80%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 80%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STMPIBuffer] PASSED [ 80%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STCSVMPIBufferV2] PASSED [ 80%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STMPIBuffer] PASSED [ 81%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 81%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STMPIBuffer] PASSED [ 81%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STCSVMPIBufferV2] PASSED [ 81%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STMPIBuffer] PASSED [ 82%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 82%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STMPIBuffer] PASSED [ 82%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STCSVMPIBufferV2] PASSED [ 83%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STMPIBuffer] PASSED [ 83%] 261s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 83%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer0] PASSED [ 83%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer1] PASSED [ 84%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer2] PASSED [ 84%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer0] PASSED [ 84%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer1] PASSED [ 85%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer2] PASSED [ 85%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer0] PASSED [ 85%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer1] PASSED [ 85%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer2] PASSED [ 86%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0] PASSED [ 86%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1] PASSED [ 86%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2] PASSED [ 86%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer0] PASSED [ 87%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer1] PASSED [ 87%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer2] PASSED [ 87%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer0] PASSED [ 88%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer1] PASSED [ 88%] 261s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer2] PASSED [ 88%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st0] PASSED [ 88%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st1] PASSED [ 89%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st0] PASSED [ 89%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st1] PASSED [ 89%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st0] PASSED [ 90%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st1] PASSED [ 90%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st0] PASSED [ 90%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st1] PASSED [ 90%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0] PASSED [ 91%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1] PASSED [ 91%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st0] PASSED [ 91%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st1] PASSED [ 91%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st0] PASSED [ 92%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st1] PASSED [ 92%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st0] PASSED [ 92%] 261s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st1] PASSED [ 93%] 261s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_fixed PASSED [ 93%] 261s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_variable PASSED [ 93%] 261s tests/utils/reports/spike_trains/test_spikes_core.py::test_equals PASSED [ 93%] 261s tests/utils/reports/spike_trains/test_spikes_core.py::test_subset PASSED [ 94%] 261s tests/utils/sonata/test_config.py::test_json PASSED [ 94%] 261s tests/utils/sonata/test_config.py::test_json_split PASSED [ 94%] 261s tests/utils/sonata/test_config.py::test_dict PASSED [ 95%] 261s tests/utils/sonata/test_config.py::test_build_manifest1 PASSED [ 95%] 261s tests/utils/sonata/test_config.py::test_build_manifest2 PASSED [ 95%] 261s tests/utils/sonata/test_config.py::test_build_manifest_fail1 PASSED [ 95%] 261s tests/utils/sonata/test_config.py::test_build_manifest_fail2 PASSED [ 96%] 261s tests/utils/sonata/test_config.py::test_output_dir PASSED [ 96%] 261s tests/utils/sonata/test_config.py::test_speical_vars PASSED [ 96%] 261s tests/utils/sonata/test_config.py::test_user_vars PASSED [ 96%] 261s tests/utils/sonata/test_config.py::test_node_set_file PASSED [ 97%] 261s tests/utils/sonata/test_config_validator.py::test_valid_config PASSED [ 97%] 261s tests/utils/sonata/test_config_validator.py::test_negative_tstop PASSED [ 97%] 261s tests/utils/sonata/test_config_validator.py::test_missing_nodes_file PASSED [ 98%] 261s tests/utils/sonata/test_config_validator.py::test_inputs PASSED [ 98%] 261s tests/utils/sonata/test_edge_stats.py::test_to_edges_dataframe PASSED [ 98%] 261s tests/utils/sonata/test_edge_stats.py::test_to_nodes_dataframe PASSED [ 98%] 261s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution PASSED [ 99%] 261s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution PASSED [ 99%] 261s tests/utils/sonata/test_edge_stats.py::test_nconnections_distributions PASSED [ 99%] 261s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table PASSED [100%] 261s 261s =============================== warnings summary =============================== 261s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 261s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 261s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 261s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 261s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 261s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 261s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead. 261s i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill') 261s 261s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] 261s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] 261s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError 261s exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1) 261s 261s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 261s ================= 310 passed, 55 skipped, 8 warnings in 17.59s ================= 262s autopkgtest [00:37:58]: test run-unit-test: -----------------------] 262s run-unit-test PASS 262s autopkgtest [00:37:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 263s autopkgtest [00:37:59]: @@@@@@@@@@@@@@@@@@@@ summary 263s run-unit-test PASS 273s flock: timeout while waiting to get lock 273s Creating nova instance adt-oracular-amd64-bmtk-20240525-003335-juju-7f2275-prod-proposed-migration-environment-3-5f09d01e-1cd9-4274-a69a-32da2a11f384 from image adt/ubuntu-oracular-amd64-server-20240524.img (UUID bfc0849f-cb68-4883-a64a-ae724e062cdb)...