0s autopkgtest [06:55:49]: starting date and time: 2024-05-29 06:55:49+0000 0s autopkgtest [06:55:49]: git checkout: 930f72e5 setup-testbed: don't install 'Recommends' for 'linux-generic' 0s autopkgtest [06:55:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g6j5e371/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dazzdb --apt-upgrade daligner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dazzdb/1.0+git20240115.be65e59-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-33.secgroup --name adt-oracular-amd64-daligner-20240529-065548-juju-7f2275-prod-proposed-migration-environment-2-76dbb420-ec77-4720-bfbb-6a88175c6233 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 63s autopkgtest [06:56:52]: testbed dpkg architecture: amd64 63s autopkgtest [06:56:52]: testbed apt version: 2.9.3 63s autopkgtest [06:56:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [508 kB] 63s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [58.2 kB] 63s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2568 B] 63s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 63s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [141 kB] 63s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [98.6 kB] 63s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [7700 B] 63s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [581 kB] 63s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [245 kB] 63s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [1972 B] 63s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [1392 B] 63s Fetched 1721 kB in 0s (5134 kB/s) 63s Reading package lists... 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Calculating upgrade... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Calculating upgrade... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [06:56:58]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 69s autopkgtest [06:56:58]: @@@@@@@@@@@@@@@@@@@@ apt-source daligner 70s Get:1 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (dsc) [2287 B] 70s Get:2 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (tar) [128 kB] 70s Get:3 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (diff) [6212 B] 70s gpgv: Signature made Wed Mar 13 20:41:30 2024 UTC 70s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 70s gpgv: issuer "emollier@debian.org" 70s gpgv: Can't check signature: No public key 70s dpkg-source: warning: cannot verify inline signature for ./daligner_1.0+git20240119.335105d-2.dsc: no acceptable signature found 70s autopkgtest [06:56:59]: testing package daligner version 1.0+git20240119.335105d-2 70s autopkgtest [06:56:59]: build not needed 70s autopkgtest [06:56:59]: test run-unit-test: preparing testbed 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Starting pkgProblemResolver with broken count: 0 71s Starting 2 pkgProblemResolver with broken count: 0 71s Done 72s The following additional packages will be installed: 72s daligner dazzdb 72s Suggested packages: 72s dascrubber 72s The following NEW packages will be installed: 72s autopkgtest-satdep daligner dazzdb 72s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 312 kB/312 kB of archives. 72s After this operation, 1354 kB of additional disk space will be used. 72s Get:1 /tmp/autopkgtest.PL60WY/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [708 B] 72s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 daligner amd64 1.0+git20240119.335105d-2 [161 kB] 72s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 dazzdb amd64 1.0+git20240115.be65e59-1 [150 kB] 72s Fetched 312 kB in 0s (8881 kB/s) 72s Selecting previously unselected package daligner. 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74360 files and directories currently installed.) 72s Preparing to unpack .../daligner_1.0+git20240119.335105d-2_amd64.deb ... 72s Unpacking daligner (1.0+git20240119.335105d-2) ... 72s Selecting previously unselected package dazzdb. 72s Preparing to unpack .../dazzdb_1.0+git20240115.be65e59-1_amd64.deb ... 72s Unpacking dazzdb (1.0+git20240115.be65e59-1) ... 72s Selecting previously unselected package autopkgtest-satdep. 72s Preparing to unpack .../1-autopkgtest-satdep.deb ... 72s Unpacking autopkgtest-satdep (0) ... 72s Setting up dazzdb (1.0+git20240115.be65e59-1) ... 72s Setting up daligner (1.0+git20240119.335105d-2) ... 72s Setting up autopkgtest-satdep (0) ... 72s Processing triggers for man-db (2.12.1-1) ... 75s (Reading database ... 74437 files and directories currently installed.) 75s Removing autopkgtest-satdep (0) ... 75s autopkgtest [06:57:04]: test run-unit-test: [----------------------- 76s You are about to overwrite the current partition settings. This 76s will invalidate any tracks, overlaps, and other derivative files. 76s Are you sure you want to proceed? [Y/N] 76s Statistics for all reads in the data set 76s 76s 1,873 reads out of 1,873 (100.0%) 76s 20,006,850 base pairs out of 20,006,850 (100.0%) 76s 76s 10,681 average read length 76s 2,159 standard deviation 76s 76s Base composition: 0.250(A) 0.250(C) 0.250(G) 0.250(T) 76s 76s Distribution of Read Lengths (Bin size = 1,000) 76s 76s Bin: Count % Reads % Bases Average 76s 19,000: 2 0.1 0.2 19450 76s 18,000: 5 0.4 0.7 18903 76s 17,000: 9 0.9 1.4 18030 76s 16,000: 15 1.7 2.7 17344 76s 15,000: 42 3.9 5.9 16242 76s 14,000: 79 8.1 11.6 15327 76s 13,000: 110 14.0 19.0 14544 76s 12,000: 178 23.5 30.1 13700 76s 11,000: 287 38.8 46.6 12819 76s 10,000: 390 59.6 67.0 12002 76s 9,000: 350 78.3 83.7 11408 76s 8,000: 251 91.7 94.4 10990 76s 7,000: 114 97.8 98.7 10776 76s 6,000: 35 99.7 99.8 10697 76s 5,000: 6 100.0 100.0 10681 76s DBstats: Warning: -mdust option given but no track found. 76s files = 1 76s 1873 G Sim 76s blocks = 2 76s size = 11000000 cutoff = 0 all = 0 76s 0 0 76s 1025 1025 76s 1873 1873 76s # Daligner jobs (2) 76s daligner -t5 -mdust G.1 G.@1-1 81s daligner -t5 -mdust G.2 G.@1-2 91s # Check initial .las files jobs (2) (optional but recommended) 91s LAcheck -vS G G.1.G.@ 91s G.1.G.1: 18,426 all OK 91s G.1.G.2: 14,736 all OK 91s LAcheck -vS G G.2.G.@ 91s G.2.G.1: 14,736 all OK 91s G.2.G.2: 12,160 all OK 91s # Merge jobs (2) 91s LAmerge G.1 G.1.G.@ && LAcheck -vS G G.1 91s G.1: 33,162 all OK 91s LAmerge G.2 G.2.G.@ && LAcheck -vS G G.2 91s G.2: 26,896 all OK 91s # Remove block .las files (optional) 91s rm G.1.G.*.las 91s rm G.2.G.*.las 91s 91s G.1: 33,162 records 91s 91s 1 68 c [ 5,088.. 7,169> x <11,000.. 8,873] ( 7,169 x 11,000 bps, 22 trace pts) 91s 91s 5088 91s A =======+----------> dif/(len1+len2) = 493/(2081+2127) = 23.43% 91s B <----------+======= 91s 8873 91s 91s autopkgtest [06:57:20]: test run-unit-test: -----------------------] 91s run-unit-test PASS 91s autopkgtest [06:57:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 91s autopkgtest [06:57:20]: @@@@@@@@@@@@@@@@@@@@ summary 91s run-unit-test PASS 101s Creating nova instance adt-oracular-amd64-daligner-20240529-065548-juju-7f2275-prod-proposed-migration-environment-2-76dbb420-ec77-4720-bfbb-6a88175c6233 from image adt/ubuntu-oracular-amd64-server-20240528.img (UUID b60cdb3e-6cc6-49f8-80c8-60bfa4b42a72)...