0s autopkgtest [06:59:34]: starting date and time: 2024-05-01 06:59:34+0000 0s autopkgtest [06:59:34]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init 0s autopkgtest [06:59:34]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zaxe9di6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade epcr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-0ubuntu8.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-43.secgroup --name adt-oracular-amd64-epcr-20240501-065934-juju-7f2275-prod-proposed-migration-environment-3-55dee458-8f8f-4a3e-83b9-d56c9fb82112 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1155s autopkgtest [07:18:49]: testbed dpkg architecture: amd64 1155s autopkgtest [07:18:49]: testbed apt version: 2.7.14build2 1155s autopkgtest [07:18:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1155s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 1156s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 1156s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [197 kB] 1156s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 1156s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [21.5 kB] 1156s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [38.9 kB] 1156s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [30.5 kB] 1156s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [7700 B] 1156s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [74.8 kB] 1156s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [123 kB] 1156s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [756 B] 1156s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [756 B] 1156s Fetched 563 kB in 0s (1991 kB/s) 1156s Reading package lists... 1157s Reading package lists... 1157s Building dependency tree... 1157s Reading state information... 1158s Calculating upgrade... 1158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1158s Reading package lists... 1158s Building dependency tree... 1158s Reading state information... 1158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1159s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 1159s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 1159s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 1159s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 1160s Reading package lists... 1160s Reading package lists... 1160s Building dependency tree... 1160s Reading state information... 1160s Calculating upgrade... 1161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1161s Reading package lists... 1161s Building dependency tree... 1161s Reading state information... 1161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1162s autopkgtest [07:18:56]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 1162s autopkgtest [07:18:56]: @@@@@@@@@@@@@@@@@@@@ apt-source epcr 1162s Get:1 http://ftpmaster.internal/ubuntu oracular/universe epcr 2.3.12-1-9 (dsc) [2026 B] 1162s Get:2 http://ftpmaster.internal/ubuntu oracular/universe epcr 2.3.12-1-9 (tar) [76.8 kB] 1162s Get:3 http://ftpmaster.internal/ubuntu oracular/universe epcr 2.3.12-1-9 (diff) [55.9 kB] 1163s gpgv: Signature made Mon Dec 7 20:11:34 2020 UTC 1163s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 1163s gpgv: issuer "tille@debian.org" 1163s gpgv: Can't check signature: No public key 1163s dpkg-source: warning: cannot verify inline signature for ./epcr_2.3.12-1-9.dsc: no acceptable signature found 1163s autopkgtest [07:18:57]: testing package epcr version 2.3.12-1-9 1163s autopkgtest [07:18:57]: build not needed 1163s autopkgtest [07:18:57]: test run-unit-test: preparing testbed 1163s Reading package lists... 1163s Building dependency tree... 1163s Reading state information... 1164s Starting pkgProblemResolver with broken count: 0 1164s Starting 2 pkgProblemResolver with broken count: 0 1164s Done 1164s The following additional packages will be installed: 1164s ncbi-epcr 1164s Suggested packages: 1164s bioperl 1164s The following NEW packages will be installed: 1164s autopkgtest-satdep ncbi-epcr 1164s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 1164s Need to get 166 kB/167 kB of archives. 1164s After this operation, 514 kB of additional disk space will be used. 1164s Get:1 /tmp/autopkgtest.x3Rpuz/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [708 B] 1164s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-epcr amd64 2.3.12-1-9 [166 kB] 1165s Fetched 166 kB in 0s (5348 kB/s) 1165s Selecting previously unselected package ncbi-epcr. 1165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73888 files and directories currently installed.) 1165s Preparing to unpack .../ncbi-epcr_2.3.12-1-9_amd64.deb ... 1165s Unpacking ncbi-epcr (2.3.12-1-9) ... 1165s Selecting previously unselected package autopkgtest-satdep. 1165s Preparing to unpack .../1-autopkgtest-satdep.deb ... 1165s Unpacking autopkgtest-satdep (0) ... 1165s Setting up ncbi-epcr (2.3.12-1-9) ... 1165s Setting up autopkgtest-satdep (0) ... 1165s Processing triggers for man-db (2.12.0-4build2) ... 1168s (Reading database ... 73907 files and directories currently installed.) 1168s Removing autopkgtest-satdep (0) ... 1168s autopkgtest [07:19:02]: test run-unit-test: [----------------------- 1168s * Adding gingko.fasta 1168s * Adding File gingko.mmap 1168s  - Adding Sequence MG922664.1 1168s = Resetting... OKTotal number of sequences: 1 1168s Number of hash entries: 20 1168s Average number of sequences per hash entry: 1 1168s Maximal number of sequences per hash entry: 1 1168s Null hash entries: 0 1168s Total number of hits: 313964 1168s Average number of hits per hash entry: 15698.2 1168s Maximal number of hits per hash entry: 48023 1168s  - Adding Sequence MG922664.1 1168s = Dumping 1168s = Dumping OK 1168s = File rbcL-primer.txt, STSes 1-2 1168s autopkgtest [07:19:02]: test run-unit-test: -----------------------] 1168s autopkgtest [07:19:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1168s run-unit-test PASS 1169s autopkgtest [07:19:03]: @@@@@@@@@@@@@@@@@@@@ summary 1169s run-unit-test PASS 1178s Creating nova instance adt-oracular-amd64-epcr-20240501-065934-juju-7f2275-prod-proposed-migration-environment-3-55dee458-8f8f-4a3e-83b9-d56c9fb82112 from image adt/ubuntu-oracular-amd64-server-20240430.img (UUID 82edbcbc-dd10-41aa-b846-dcd712b50bf9)...