0s autopkgtest [01:38:38]: starting date and time: 2024-07-25 01:38:38+0000 0s autopkgtest [01:38:38]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [01:38:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mxfa0hfj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:epcr --apt-upgrade epcr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=epcr/2.3.12-1-10 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-69.secgroup --name adt-oracular-amd64-epcr-20240725-013838-juju-7f2275-prod-proposed-migration-environment-2-bedc70c3-32b7-45fa-a9af-100496287963 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 84s autopkgtest [01:40:02]: testbed dpkg architecture: amd64 84s autopkgtest [01:40:02]: testbed apt version: 2.9.6 84s autopkgtest [01:40:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 85s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 85s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 85s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4928 B] 85s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [401 kB] 85s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [56.3 kB] 85s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [99.0 kB] 85s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [55.1 kB] 85s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 85s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 85s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 85s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 85s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [503 kB] 85s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [286 kB] 85s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 85s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3328 B] 85s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [9068 B] 85s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 86s Fetched 1606 kB in 0s (3943 kB/s) 86s Reading package lists... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 89s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 89s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 89s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 91s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s autopkgtest [01:40:12]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 94s autopkgtest [01:40:12]: @@@@@@@@@@@@@@@@@@@@ apt-source epcr 95s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe epcr 2.3.12-1-10 (dsc) [2188 B] 95s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe epcr 2.3.12-1-10 (tar) [76.8 kB] 95s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe epcr 2.3.12-1-10 (diff) [56.1 kB] 95s gpgv: Signature made Wed Jul 24 19:07:21 2024 UTC 95s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 95s gpgv: issuer "emollier@debian.org" 95s gpgv: Can't check signature: No public key 95s dpkg-source: warning: cannot verify inline signature for ./epcr_2.3.12-1-10.dsc: no acceptable signature found 95s autopkgtest [01:40:13]: testing package epcr version 2.3.12-1-10 95s autopkgtest [01:40:13]: build not needed 95s autopkgtest [01:40:13]: test run-unit-test: preparing testbed 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 97s The following additional packages will be installed: 97s ncbi-epcr 97s Suggested packages: 97s bioperl 97s The following NEW packages will be installed: 97s autopkgtest-satdep ncbi-epcr 97s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 176 kB/177 kB of archives. 97s After this operation, 433 kB of additional disk space will be used. 97s Get:1 /tmp/autopkgtest.QoZkRJ/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 97s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 ncbi-epcr amd64 2.3.12-1-10 [176 kB] 98s Fetched 176 kB in 0s (3606 kB/s) 98s Selecting previously unselected package ncbi-epcr. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74498 files and directories currently installed.) 98s Preparing to unpack .../ncbi-epcr_2.3.12-1-10_amd64.deb ... 98s Unpacking ncbi-epcr (2.3.12-1-10) ... 98s Selecting previously unselected package autopkgtest-satdep. 98s Preparing to unpack .../1-autopkgtest-satdep.deb ... 98s Unpacking autopkgtest-satdep (0) ... 98s Setting up ncbi-epcr (2.3.12-1-10) ... 98s Setting up autopkgtest-satdep (0) ... 98s Processing triggers for man-db (2.12.1-2) ... 101s (Reading database ... 74517 files and directories currently installed.) 101s Removing autopkgtest-satdep (0) ... 101s autopkgtest [01:40:19]: test run-unit-test: [----------------------- 101s * Adding gingko.fasta 101s * Adding File gingko.mmap 101s  - Adding Sequence MG922664.1 101s = Resetting... OKTotal number of sequences: 1 101s Number of hash entries: 20 101s Average number of sequences per hash entry: 1 101s Maximal number of sequences per hash entry: 1 101s Null hash entries: 0 101s Total number of hits: 313964 101s Average number of hits per hash entry: 15698.2 101s Maximal number of hits per hash entry: 48023 101s  - Adding Sequence MG922664.1 101s = Dumping 101s = Dumping OK 101s = File rbcL-primer.txt, STSes 1-2 101s autopkgtest [01:40:19]: test run-unit-test: -----------------------] 101s autopkgtest [01:40:19]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 101s run-unit-test PASS 101s autopkgtest [01:40:19]: @@@@@@@@@@@@@@@@@@@@ summary 101s run-unit-test PASS 120s nova [W] Skipping flock for amd64 120s Creating nova instance adt-oracular-amd64-epcr-20240725-013838-juju-7f2275-prod-proposed-migration-environment-2-bedc70c3-32b7-45fa-a9af-100496287963 from image adt/ubuntu-oracular-amd64-server-20240725.img (UUID afc6d432-f1cb-47ee-9d05-035a12c375fc)...