0s autopkgtest [10:54:30]: starting date and time: 2024-05-18 10:54:30+0000 0s autopkgtest [10:54:30]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init 0s autopkgtest [10:54:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ow1t52bb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scipy --apt-upgrade symfit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scipy/1.11.4-9 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-3.secgroup --name adt-oracular-amd64-symfit-20240518-105430-juju-7f2275-prod-proposed-migration-environment-2-c1d92422-d868-44ed-b2db-0d11e9b749e1 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 166s autopkgtest [10:57:16]: testbed dpkg architecture: amd64 166s autopkgtest [10:57:16]: testbed apt version: 2.7.14build2 166s autopkgtest [10:57:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 167s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 167s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [1607 kB] 167s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [133 kB] 167s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [8668 B] 167s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 167s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [240 kB] 167s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [193 kB] 167s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [7700 B] 167s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [1950 kB] 167s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [900 kB] 167s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [6036 B] 167s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [18.5 kB] 167s Fetched 5139 kB in 1s (6279 kB/s) 168s Reading package lists... 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s Calculating upgrade... 170s The following packages will be upgraded: 170s intel-microcode libslang2 170s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s Need to get 7367 kB of archives. 170s After this operation, 55.3 kB of additional disk space will be used. 170s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libslang2 amd64 2.3.3-5 [506 kB] 170s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 intel-microcode amd64 3.20240514.1 [6861 kB] 170s Fetched 7367 kB in 0s (68.8 MB/s) 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73899 files and directories currently installed.) 170s Preparing to unpack .../libslang2_2.3.3-5_amd64.deb ... 170s Unpacking libslang2:amd64 (2.3.3-5) over (2.3.3-3build2) ... 171s Preparing to unpack .../intel-microcode_3.20240514.1_amd64.deb ... 171s Unpacking intel-microcode (3.20240514.1) over (3.20240312.1build1) ... 171s Setting up intel-microcode (3.20240514.1) ... 171s update-initramfs: deferring update (trigger activated) 171s intel-microcode: microcode will be updated at next boot 171s Setting up libslang2:amd64 (2.3.3-5) ... 171s Processing triggers for libc-bin (2.39-0ubuntu8) ... 171s Processing triggers for initramfs-tools (0.142ubuntu25) ... 171s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 171s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 180s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 180s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 180s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 181s Reading package lists... 181s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Calculating upgrade... 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [10:57:33]: rebooting testbed after setup commands that affected boot 186s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 198s autopkgtest [10:57:48]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 198s autopkgtest [10:57:48]: @@@@@@@@@@@@@@@@@@@@ apt-source symfit 200s Get:1 http://ftpmaster.internal/ubuntu oracular/universe symfit 0.5.6-2ubuntu1 (dsc) [2518 B] 200s Get:2 http://ftpmaster.internal/ubuntu oracular/universe symfit 0.5.6-2ubuntu1 (tar) [923 kB] 200s Get:3 http://ftpmaster.internal/ubuntu oracular/universe symfit 0.5.6-2ubuntu1 (diff) [5824 B] 200s gpgv: Signature made Sat Apr 6 21:50:15 2024 UTC 200s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 200s gpgv: Can't check signature: No public key 200s dpkg-source: warning: cannot verify inline signature for ./symfit_0.5.6-2ubuntu1.dsc: no acceptable signature found 200s autopkgtest [10:57:50]: testing package symfit version 0.5.6-2ubuntu1 200s autopkgtest [10:57:50]: build not needed 200s autopkgtest [10:57:50]: test pytest: preparing testbed 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 202s The following additional packages will be installed: 202s blt fonts-lyx fonts-mathjax fonts-open-sans libblas3 libgfortran5 libgomp1 202s libgraphite2-3 libharfbuzz0b libimagequant0 libjs-jquery libjs-jquery-ui 202s libjs-mathjax libjs-requirejs libjs-sphinxdoc libjs-underscore liblapack3 202s liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libtcl8.6 libtk8.6 202s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 202s python-matplotlib-data python-scipy-doc python-sympy-doc python3-all 202s python3-appdirs python3-brotli python3-contourpy python3-cycler 202s python3-dateutil python3-decorator python3-doc python3-fonttools python3-fs 202s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 202s python3-matplotlib python3-mpmath python3-numpy python3-packaging 202s python3-pil python3-pil.imagetk python3-pluggy python3-pytest python3-scipy 202s python3-symfit python3-symfit-doc python3-sympy python3-tk python3-toposort 202s python3-ufolib2 python3.12-doc tk8.6-blt2.5 unicode-data x11-common 202s Suggested packages: 202s blt-demo libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 202s libjs-mathjax-doc liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 202s python3-examples python-lxml-doc cm-super-minimal dvipng ffmpeg 202s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 202s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 202s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 202s python3-gmpy2 gcc gfortran python3-dev python-pil-doc texlive-fonts-extra 202s tix python3-tk-dbg 202s Recommended packages: 202s javascript-common python3-bs4 python3-cssselect python3-html5lib 202s python3-olefile g++ | c++-compiler isympy-common 202s The following NEW packages will be installed: 202s autopkgtest-satdep blt fonts-lyx fonts-mathjax fonts-open-sans libblas3 202s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 202s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-requirejs libjs-sphinxdoc 202s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 202s libraqm0 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxrender1 202s libxslt1.1 libxss1 python-matplotlib-data python-scipy-doc python-sympy-doc 202s python3-all python3-appdirs python3-brotli python3-contourpy python3-cycler 202s python3-dateutil python3-decorator python3-doc python3-fonttools python3-fs 202s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 202s python3-matplotlib python3-mpmath python3-numpy python3-packaging 202s python3-pil python3-pil.imagetk python3-pluggy python3-pytest python3-scipy 202s python3-symfit python3-symfit-doc python3-sympy python3-tk python3-toposort 202s python3-ufolib2 python3.12-doc tk8.6-blt2.5 unicode-data x11-common 202s 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 202s Need to get 132 MB/132 MB of archives. 202s After this operation, 562 MB of additional disk space will be used. 202s Get:1 /tmp/autopkgtest.pTgs2C/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [736 B] 202s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 202s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 202s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 202s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 202s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 202s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 202s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 202s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 202s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.0~RC4-1 [170 kB] 202s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 202s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-open-sans all 1.11-2 [635 kB] 202s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 202s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14-20240412-0ubuntu1 [924 kB] 202s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14-20240412-0ubuntu1 [147 kB] 202s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB] 202s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 202s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 202s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 202s Get:20 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 202s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 202s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-sphinxdoc all 7.2.6-6 [149 kB] 202s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 202s Get:24 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 202s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 202s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 202s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 202s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.3.2-0.4build3 [12.4 kB] 202s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.3.2-0.4build3 [25.7 kB] 202s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 202s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-1ubuntu5 [2936 kB] 202s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 202s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-sympy-doc all 1.12-7 [18.7 MB] 203s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 203s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 203s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 203s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-6ubuntu1 [4437 kB] 203s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB] 203s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 203s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.8.2-3ubuntu1 [79.4 kB] 203s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 203s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 python3.12-doc all 3.12.3-1 [12.1 MB] 203s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-doc all 3.12.3-0ubuntu1 [10.1 kB] 203s Get:44 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-scipy amd64 1.11.4-9 [15.5 MB] 203s Get:45 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 203s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 203s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-7 [3966 kB] 203s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 203s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 203s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 203s Get:51 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 203s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 203s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 203s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB] 203s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 203s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.2.0-1build1 [451 kB] 203s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB] 203s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.2.0-1build1 [9238 B] 203s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 203s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-1ubuntu5 [6079 kB] 203s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.4.0-1 [20.4 kB] 203s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 203s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-toposort all 1.10-1 [6616 B] 203s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-symfit all 0.5.6-2ubuntu1 [45.3 kB] 203s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-requirejs all 2.3.6+ds+~2.1.34-2 [201 kB] 203s Get:66 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python-scipy-doc all 1.11.4-9 [35.6 MB] 203s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-symfit-doc all 0.5.6-2ubuntu1 [1118 kB] 204s Preconfiguring packages ... 204s Fetched 132 MB in 1s (140 MB/s) 204s Selecting previously unselected package libtcl8.6:amd64. 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73899 files and directories currently installed.) 204s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 204s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 204s Selecting previously unselected package libxrender1:amd64. 204s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 204s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 204s Selecting previously unselected package libxft2:amd64. 204s Preparing to unpack .../02-libxft2_2.3.6-1build1_amd64.deb ... 204s Unpacking libxft2:amd64 (2.3.6-1build1) ... 204s Selecting previously unselected package x11-common. 204s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 204s Unpacking x11-common (1:7.7+23ubuntu3) ... 204s Selecting previously unselected package libxss1:amd64. 204s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_amd64.deb ... 204s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 204s Selecting previously unselected package libtk8.6:amd64. 204s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_amd64.deb ... 204s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 204s Selecting previously unselected package tk8.6-blt2.5. 204s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 204s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 204s Selecting previously unselected package blt. 204s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_amd64.deb ... 204s Unpacking blt (2.5.3+dfsg-7build1) ... 204s Selecting previously unselected package fonts-lyx. 204s Preparing to unpack .../08-fonts-lyx_2.4.0~RC4-1_all.deb ... 204s Unpacking fonts-lyx (2.4.0~RC4-1) ... 204s Selecting previously unselected package fonts-mathjax. 204s Preparing to unpack .../09-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 204s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 204s Selecting previously unselected package fonts-open-sans. 204s Preparing to unpack .../10-fonts-open-sans_1.11-2_all.deb ... 204s Unpacking fonts-open-sans (1.11-2) ... 205s Selecting previously unselected package libblas3:amd64. 205s Preparing to unpack .../11-libblas3_3.12.0-3build1_amd64.deb ... 205s Unpacking libblas3:amd64 (3.12.0-3build1) ... 205s Selecting previously unselected package libgfortran5:amd64. 205s Preparing to unpack .../12-libgfortran5_14-20240412-0ubuntu1_amd64.deb ... 205s Unpacking libgfortran5:amd64 (14-20240412-0ubuntu1) ... 205s Selecting previously unselected package libgomp1:amd64. 205s Preparing to unpack .../13-libgomp1_14-20240412-0ubuntu1_amd64.deb ... 205s Unpacking libgomp1:amd64 (14-20240412-0ubuntu1) ... 205s Selecting previously unselected package libgraphite2-3:amd64. 205s Preparing to unpack .../14-libgraphite2-3_1.3.14-2build1_amd64.deb ... 205s Unpacking libgraphite2-3:amd64 (1.3.14-2build1) ... 205s Selecting previously unselected package libharfbuzz0b:amd64. 205s Preparing to unpack .../15-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 205s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 205s Selecting previously unselected package libimagequant0:amd64. 205s Preparing to unpack .../16-libimagequant0_2.18.0-1build1_amd64.deb ... 205s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 205s Selecting previously unselected package libjs-jquery. 205s Preparing to unpack .../17-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 205s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 205s Selecting previously unselected package libjs-jquery-ui. 205s Preparing to unpack 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python3.12-doc (3.12.3-1) ... 222s Setting up python3-doc (3.12.3-0ubuntu1) ... 222s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 222s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 222s Setting up python3-scipy (1.11.4-9) ... 225s Setting up blt (2.5.3+dfsg-7build1) ... 225s Setting up python-sympy-doc (1.12-7) ... 225s Setting up python3-tk:amd64 (3.12.3-0ubuntu1) ... 225s Setting up python3-pil:amd64 (10.2.0-1build1) ... 226s Setting up python3-pil.imagetk:amd64 (10.2.0-1build1) ... 226s Setting up python-scipy-doc (1.11.4-9) ... 226s Setting up python3-symfit (0.5.6-2ubuntu1) ... 226s Setting up python3-symfit-doc (0.5.6-2ubuntu1) ... 226s Setting up python3-fonttools (4.46.0-1build2) ... 227s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 227s Setting up python3-matplotlib (3.6.3-1ubuntu5) ... 229s Setting up autopkgtest-satdep (0) ... 229s Processing triggers for libc-bin (2.39-0ubuntu8) ... 229s Processing triggers for man-db (2.12.0-4build2) ... 229s Processing triggers for install-info (7.1-3build2) ... 233s (Reading database ... 97303 files and directories currently installed.) 233s Removing autopkgtest-satdep (0) ... 233s autopkgtest [10:58:23]: test pytest: [----------------------- 236s ============================= test session starts ============================== 236s platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.4.0 236s rootdir: /tmp/autopkgtest.pTgs2C/build.J3J/src 236s configfile: pytest.ini 236s collected 141 items 236s 236s symfit/contrib/interactive_guess/tests/test_interactive_fit.py ......... [ 6%] 238s ......... [ 12%] 238s tests/test_argument.py .... [ 15%] 239s tests/test_auto_fit.py ...... [ 19%] 246s tests/test_constrained.py .....s............ [ 32%] 246s tests/test_distributions.py .. [ 34%] 248s tests/test_finite_difference.py ........ [ 39%] 259s tests/test_fit_result.py .......... [ 46%] 277s tests/test_general.py .........s..............s...... [ 68%] 307s tests/test_global_opt.py .... [ 71%] 311s tests/test_minimize.py ...... [ 75%] 334s tests/test_minimizers.py ....... [ 80%] 334s tests/test_model.py ............ [ 89%] 335s tests/test_objectives.py ..... [ 92%] 346s tests/test_ode.py ........ [ 98%] 346s tests/test_support.py .. [100%] 346s 346s =============================== warnings summary =============================== 346s symfit/core/printing.py:13 346s /tmp/autopkgtest.pTgs2C/build.J3J/src/symfit/core/printing.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 346s import pkg_resources 346s 346s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 346s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. 346s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 346s declare_namespace(pkg) 346s 346s tests/test_auto_fit.py: 3 warnings 346s tests/test_constrained.py: 14 warnings 346s tests/test_finite_difference.py: 1 warning 346s tests/test_fit_result.py: 5 warnings 346s tests/test_general.py: 16 warnings 346s tests/test_minimizers.py: 2 warnings 346s tests/test_objectives.py: 1 warning 346s tests/test_ode.py: 1 warning 346s /tmp/autopkgtest.pTgs2C/build.J3J/src/symfit/core/fit.py:278: DeprecationWarning: `product` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `prod` instead. 346s cov_matrix = self._covariance_matrix(best_fit_params, 346s 346s tests/test_auto_fit.py: 2 warnings 346s tests/test_constrained.py: 13 warnings 346s tests/test_finite_difference.py: 2 warnings 346s tests/test_fit_result.py: 1 warning 346s tests/test_general.py: 12 warnings 346s tests/test_global_opt.py: 3 warnings 346s tests/test_ode.py: 7 warnings 346s /tmp/autopkgtest.pTgs2C/build.J3J/src/symfit/core/fit.py:301: DeprecationWarning: `product` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `prod` instead. 346s cov_matrix = self._covariance_matrix(best_fit_params, 346s 346s tests/test_general.py::test_likelihood_fitting_exponential 346s /usr/lib/python3/dist-packages/_pytest/python.py:194: DeprecationWarning: `product` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `prod` instead. 346s result = testfunction(**testargs) 346s 346s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 346s =========== 138 passed, 3 skipped, 86 warnings in 113.06s (0:01:53) ============ 347s autopkgtest [11:00:17]: test pytest: -----------------------] 348s pytest PASS 348s autopkgtest [11:00:18]: test pytest: - - - - - - - - - - results - - - - - - - - - - 348s autopkgtest [11:00:18]: test autodep8-python3: preparing testbed 505s autopkgtest [11:02:55]: testbed dpkg architecture: amd64 505s autopkgtest [11:02:55]: testbed apt version: 2.7.14build2 505s autopkgtest [11:02:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 506s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 506s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [133 kB] 506s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [8668 B] 506s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [1607 kB] 506s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 506s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [193 kB] 506s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [240 kB] 506s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [7700 B] 506s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [900 kB] 506s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [1950 kB] 506s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [6036 B] 506s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [18.5 kB] 506s Fetched 5139 kB in 1s (6632 kB/s) 506s Reading package lists... 508s Reading package lists... 508s Building dependency tree... 508s Reading state information... 509s Calculating upgrade... 509s The following packages will be upgraded: 509s intel-microcode libslang2 509s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 509s Need to get 7367 kB of archives. 509s After this operation, 55.3 kB of additional disk space will be used. 509s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libslang2 amd64 2.3.3-5 [506 kB] 509s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 intel-microcode amd64 3.20240514.1 [6861 kB] 509s Fetched 7367 kB in 0s (74.4 MB/s) 509s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73899 files and directories currently installed.) 509s Preparing to unpack .../libslang2_2.3.3-5_amd64.deb ... 509s Unpacking libslang2:amd64 (2.3.3-5) over (2.3.3-3build2) ... 509s Preparing to unpack .../intel-microcode_3.20240514.1_amd64.deb ... 509s Unpacking intel-microcode (3.20240514.1) over (3.20240312.1build1) ... 510s Setting up intel-microcode (3.20240514.1) ... 510s update-initramfs: deferring update (trigger activated) 510s intel-microcode: microcode will be updated at next boot 510s Setting up libslang2:amd64 (2.3.3-5) ... 510s Processing triggers for libc-bin (2.39-0ubuntu8) ... 510s Processing triggers for initramfs-tools (0.142ubuntu25) ... 510s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 510s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 520s Reading package lists... 520s Building dependency tree... 520s Reading state information... 521s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 521s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 521s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 521s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 521s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 523s Reading package lists... 523s Reading package lists... 523s Building dependency tree... 523s Reading state information... 523s Calculating upgrade... 524s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 524s Reading package lists... 524s Building dependency tree... 524s Reading state information... 524s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 525s autopkgtest [11:03:15]: rebooting testbed after setup commands that affected boot 528s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 542s Reading package lists... 542s Building dependency tree... 542s Reading state information... 543s Starting pkgProblemResolver with broken count: 0 543s Starting 2 pkgProblemResolver with broken count: 0 543s Done 543s The following additional packages will be installed: 543s libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-all python3-decorator 543s python3-mpmath python3-numpy python3-scipy python3-symfit python3-sympy 543s python3-toposort 543s Suggested packages: 543s python-mpmath-doc python3-gmpy2 python3-matplotlib gcc gfortran python3-dev 543s python3-pytest python-scipy-doc texlive-fonts-extra dvipng python-sympy-doc 543s Recommended packages: 543s g++ | c++-compiler python3-pil isympy-common 543s The following NEW packages will be installed: 543s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-all 543s python3-decorator python3-mpmath python3-numpy python3-scipy python3-symfit 543s python3-sympy python3-toposort 543s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 543s Need to get 28.2 MB/28.3 MB of archives. 543s After this operation, 124 MB of additional disk space will be used. 543s Get:1 /tmp/autopkgtest.pTgs2C/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B] 543s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 543s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14-20240412-0ubuntu1 [924 kB] 543s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 543s Get:5 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 543s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 543s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 543s Get:8 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 543s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-6ubuntu1 [4437 kB] 543s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-scipy amd64 1.11.4-9 [15.5 MB] 544s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-7 [3966 kB] 544s Get:12 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-toposort all 1.10-1 [6616 B] 544s Get:13 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-symfit all 0.5.6-2ubuntu1 [45.3 kB] 544s Fetched 28.2 MB in 0s (98.9 MB/s) 544s Selecting previously unselected package libblas3:amd64. 545s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73899 files and directories currently installed.) 545s Preparing to unpack .../00-libblas3_3.12.0-3build1_amd64.deb ... 545s Unpacking libblas3:amd64 (3.12.0-3build1) ... 545s Selecting previously unselected package libgfortran5:amd64. 545s Preparing to unpack .../01-libgfortran5_14-20240412-0ubuntu1_amd64.deb ... 545s Unpacking libgfortran5:amd64 (14-20240412-0ubuntu1) ... 545s Selecting previously unselected package liblapack3:amd64. 545s Preparing to unpack .../02-liblapack3_3.12.0-3build1_amd64.deb ... 545s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 545s Selecting previously unselected package liblbfgsb0:amd64. 545s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 545s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 545s Selecting previously unselected package python3-all. 545s Preparing to unpack .../04-python3-all_3.12.3-0ubuntu1_amd64.deb ... 545s Unpacking python3-all (3.12.3-0ubuntu1) ... 545s Selecting previously unselected package python3-decorator. 545s Preparing to unpack .../05-python3-decorator_5.1.1-5_all.deb ... 545s Unpacking python3-decorator (5.1.1-5) ... 545s Selecting previously unselected package python3-mpmath. 545s Preparing to unpack .../06-python3-mpmath_1.3.0-1_all.deb ... 545s Unpacking python3-mpmath (1.3.0-1) ... 545s Selecting previously unselected package python3-numpy. 545s Preparing to unpack .../07-python3-numpy_1%3a1.26.4+ds-6ubuntu1_amd64.deb ... 545s Unpacking python3-numpy (1:1.26.4+ds-6ubuntu1) ... 545s Selecting previously unselected package python3-scipy. 545s Preparing to unpack .../08-python3-scipy_1.11.4-9_amd64.deb ... 545s Unpacking python3-scipy (1.11.4-9) ... 546s Selecting previously unselected package python3-sympy. 546s Preparing to unpack .../09-python3-sympy_1.12-7_all.deb ... 546s Unpacking python3-sympy (1.12-7) ... 546s Selecting previously unselected package python3-toposort. 546s Preparing to unpack .../10-python3-toposort_1.10-1_all.deb ... 546s Unpacking python3-toposort (1.10-1) ... 546s Selecting previously unselected package python3-symfit. 546s Preparing to unpack .../11-python3-symfit_0.5.6-2ubuntu1_all.deb ... 546s Unpacking python3-symfit (0.5.6-2ubuntu1) ... 546s Selecting previously unselected package autopkgtest-satdep. 546s Preparing to unpack .../12-2-autopkgtest-satdep.deb ... 546s Unpacking autopkgtest-satdep (0) ... 546s Setting up python3-toposort (1.10-1) ... 546s Setting up python3-all (3.12.3-0ubuntu1) ... 546s Setting up python3-decorator (5.1.1-5) ... 546s Setting up libblas3:amd64 (3.12.0-3build1) ... 546s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 546s Setting up libgfortran5:amd64 (14-20240412-0ubuntu1) ... 546s Setting up python3-mpmath (1.3.0-1) ... 547s Setting up python3-sympy (1.12-7) ... 553s Setting up liblapack3:amd64 (3.12.0-3build1) ... 553s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 553s Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ... 555s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 555s Setting up python3-scipy (1.11.4-9) ... 559s Setting up python3-symfit (0.5.6-2ubuntu1) ... 559s Setting up autopkgtest-satdep (0) ... 559s Processing triggers for man-db (2.12.0-4build2) ... 559s Processing triggers for libc-bin (2.39-0ubuntu8) ... 562s (Reading database ... 77963 files and directories currently installed.) 562s Removing autopkgtest-satdep (0) ... 563s autopkgtest [11:03:53]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import symfit; print(symfit)" ; done 563s autopkgtest [11:03:53]: test autodep8-python3: [----------------------- 563s Testing with python3.12: 564s 564s autopkgtest [11:03:54]: test autodep8-python3: -----------------------] 564s autodep8-python3 PASS (superficial) 564s autopkgtest [11:03:54]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 564s autopkgtest [11:03:54]: @@@@@@@@@@@@@@@@@@@@ summary 564s pytest PASS 564s autodep8-python3 PASS (superficial) 575s flock: timeout while waiting to get lock 575s Creating nova instance adt-oracular-amd64-symfit-20240518-105430-juju-7f2275-prod-proposed-migration-environment-2-c1d92422-d868-44ed-b2db-0d11e9b749e1 from image adt/ubuntu-oracular-amd64-server-20240517.img (UUID 563125b5-f02b-4a53-8995-aabb4f54fc43)... 575s flock: timeout while waiting to get lock 575s Creating nova instance adt-oracular-amd64-symfit-20240518-105430-juju-7f2275-prod-proposed-migration-environment-2-c1d92422-d868-44ed-b2db-0d11e9b749e1 from image adt/ubuntu-oracular-amd64-server-20240517.img (UUID 563125b5-f02b-4a53-8995-aabb4f54fc43)...