0s autopkgtest [01:49:41]: starting date and time: 2024-05-01 01:49:41+0000 0s autopkgtest [01:49:41]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init 0s autopkgtest [01:49:41]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r6flen49/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade libssw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-0ubuntu8.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-27.secgroup --name adt-oracular-arm64-libssw-20240501-014941-juju-7f2275-prod-proposed-migration-environment-3-b6b58686-70ea-4e13-b6b3-77b23ccd3abc --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 273s autopkgtest [01:54:14]: testbed dpkg architecture: arm64 273s autopkgtest [01:54:14]: testbed apt version: 2.7.14build2 273s autopkgtest [01:54:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 274s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 275s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [21.1 kB] 275s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 275s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 275s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [197 kB] 275s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [39.4 kB] 275s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [12.3 kB] 275s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [124 kB] 275s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [756 B] 275s Fetched 462 kB in 1s (377 kB/s) 275s Reading package lists... 278s Reading package lists... 279s Building dependency tree... 279s Reading state information... 279s Calculating upgrade... 280s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 280s Reading package lists... 280s Building dependency tree... 280s Reading state information... 281s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 283s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 283s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 283s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 283s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 284s Reading package lists... 284s Reading package lists... 284s Building dependency tree... 284s Reading state information... 285s Calculating upgrade... 285s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 285s Reading package lists... 286s Building dependency tree... 286s Reading state information... 286s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 289s autopkgtest [01:54:30]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 289s autopkgtest [01:54:30]: @@@@@@@@@@@@@@@@@@@@ apt-source libssw 295s Get:1 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (dsc) [2501 B] 295s Get:2 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (tar) [12.3 MB] 295s Get:3 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (diff) [54.3 kB] 295s gpgv: Signature made Mon Apr 22 09:48:29 2024 UTC 295s gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 295s gpgv: issuer "juliank@ubuntu.com" 295s gpgv: Can't check signature: No public key 295s dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-14build1.dsc: no acceptable signature found 296s autopkgtest [01:54:37]: testing package libssw version 1.1-14build1 296s autopkgtest [01:54:37]: build not needed 298s autopkgtest [01:54:39]: test build-lib: preparing testbed 299s Reading package lists... 300s Building dependency tree... 300s Reading state information... 300s Starting pkgProblemResolver with broken count: 0 300s Starting 2 pkgProblemResolver with broken count: 0 300s Done 301s The following additional packages will be installed: 301s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 301s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 301s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libatomic1 libcc1-0 301s libgcc-13-dev libgomp1 libhwasan0 libisl23 libitm1 liblsan0 libmpc3 301s libssw-dev libssw0 libstdc++-13-dev libtsan2 libubsan1 zlib1g-dev 301s Suggested packages: 301s cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib manpages-dev 301s autoconf automake libtool flex bison gdb gcc-doc gdb-aarch64-linux-gnu 301s libstdc++-13-doc 301s The following NEW packages will be installed: 301s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 301s cpp-aarch64-linux-gnu g++ g++-13 g++-13-aarch64-linux-gnu 301s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 301s gcc-aarch64-linux-gnu libasan8 libatomic1 libcc1-0 libgcc-13-dev libgomp1 301s libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libssw-dev libssw0 301s libstdc++-13-dev libtsan2 libubsan1 zlib1g-dev 301s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 301s Need to get 59.0 MB/59.0 MB of archives. 301s After this operation, 204 MB of additional disk space will be used. 301s Get:1 /tmp/autopkgtest.l7S45a/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 301s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libisl23 arm64 0.26-3build1 [669 kB] 302s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB] 302s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [10.3 MB] 302s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-13 arm64 13.2.0-23ubuntu4 [1032 B] 302s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 302s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 302s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 libcc1-0 arm64 14-20240412-0ubuntu1 [44.7 kB] 302s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 libgomp1 arm64 14-20240412-0ubuntu1 [144 kB] 302s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14-20240412-0ubuntu1 [27.9 kB] 302s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 libatomic1 arm64 14-20240412-0ubuntu1 [11.4 kB] 302s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14-20240412-0ubuntu1 [2921 kB] 302s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14-20240412-0ubuntu1 [1286 kB] 302s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14-20240412-0ubuntu1 [2692 kB] 302s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14-20240412-0ubuntu1 [1155 kB] 302s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14-20240412-0ubuntu1 [1604 kB] 302s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu4 [2470 kB] 302s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [20.1 MB] 303s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-13 arm64 13.2.0-23ubuntu4 [472 kB] 303s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 303s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 303s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu4 [2379 kB] 303s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu4 [11.7 MB] 303s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-13 arm64 13.2.0-23ubuntu4 [14.5 kB] 303s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 303s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 303s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 303s Get:28 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw0 arm64 1.1-14build1 [21.4 kB] 303s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw-dev arm64 1.1-14build1 [23.2 kB] 303s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 304s Fetched 59.0 MB in 2s (28.6 MB/s) 304s Selecting previously unselected package libisl23:arm64. 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77723 files and directories currently installed.) 304s Preparing to unpack .../00-libisl23_0.26-3build1_arm64.deb ... 304s Unpacking libisl23:arm64 (0.26-3build1) ... 304s Selecting previously unselected package libmpc3:arm64. 304s Preparing to unpack .../01-libmpc3_1.3.1-1build1_arm64.deb ... 304s Unpacking libmpc3:arm64 (1.3.1-1build1) ... 304s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 304s Preparing to unpack .../02-cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 304s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 305s Selecting previously unselected package cpp-13. 305s Preparing to unpack .../03-cpp-13_13.2.0-23ubuntu4_arm64.deb ... 305s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 305s Selecting previously unselected package cpp-aarch64-linux-gnu. 305s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 305s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 305s Selecting previously unselected package cpp. 305s Preparing to unpack .../05-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 305s Unpacking cpp (4:13.2.0-7ubuntu1) ... 305s Selecting previously unselected package libcc1-0:arm64. 305s Preparing to unpack .../06-libcc1-0_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libcc1-0:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libgomp1:arm64. 305s Preparing to unpack .../07-libgomp1_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libgomp1:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libitm1:arm64. 305s Preparing to unpack .../08-libitm1_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libitm1:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libatomic1:arm64. 305s Preparing to unpack .../09-libatomic1_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libatomic1:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libasan8:arm64. 305s Preparing to unpack .../10-libasan8_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libasan8:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package liblsan0:arm64. 305s Preparing to unpack .../11-liblsan0_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking liblsan0:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libtsan2:arm64. 305s Preparing to unpack .../12-libtsan2_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libtsan2:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libubsan1:arm64. 305s Preparing to unpack .../13-libubsan1_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libubsan1:arm64 (14-20240412-0ubuntu1) ... 305s Selecting previously unselected package libhwasan0:arm64. 305s Preparing to unpack .../14-libhwasan0_14-20240412-0ubuntu1_arm64.deb ... 305s Unpacking libhwasan0:arm64 (14-20240412-0ubuntu1) ... 306s Selecting previously unselected package libgcc-13-dev:arm64. 306s Preparing to unpack .../15-libgcc-13-dev_13.2.0-23ubuntu4_arm64.deb ... 306s Unpacking libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 306s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 306s Preparing to unpack .../16-gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 306s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 306s Selecting previously unselected package gcc-13. 306s Preparing to unpack .../17-gcc-13_13.2.0-23ubuntu4_arm64.deb ... 306s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 306s Selecting previously unselected package gcc-aarch64-linux-gnu. 306s Preparing to unpack .../18-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 306s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 306s Selecting previously unselected package gcc. 307s Preparing to unpack .../19-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 307s Unpacking gcc (4:13.2.0-7ubuntu1) ... 307s Selecting previously unselected package libstdc++-13-dev:arm64. 307s Preparing to unpack .../20-libstdc++-13-dev_13.2.0-23ubuntu4_arm64.deb ... 307s Unpacking libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 307s Selecting previously unselected package g++-13-aarch64-linux-gnu. 307s Preparing to unpack .../21-g++-13-aarch64-linux-gnu_13.2.0-23ubuntu4_arm64.deb ... 307s Unpacking g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 307s Selecting previously unselected package g++-13. 307s Preparing to unpack .../22-g++-13_13.2.0-23ubuntu4_arm64.deb ... 307s Unpacking g++-13 (13.2.0-23ubuntu4) ... 307s Selecting previously unselected package g++-aarch64-linux-gnu. 307s Preparing to unpack .../23-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 307s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 307s Selecting previously unselected package g++. 307s Preparing to unpack .../24-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 307s Unpacking g++ (4:13.2.0-7ubuntu1) ... 307s Selecting previously unselected package build-essential. 308s Preparing to unpack .../25-build-essential_12.10ubuntu1_arm64.deb ... 308s Unpacking build-essential (12.10ubuntu1) ... 308s Selecting previously unselected package libssw0:arm64. 308s Preparing to unpack .../26-libssw0_1.1-14build1_arm64.deb ... 308s Unpacking libssw0:arm64 (1.1-14build1) ... 308s Selecting previously unselected package libssw-dev:arm64. 308s Preparing to unpack .../27-libssw-dev_1.1-14build1_arm64.deb ... 308s Unpacking libssw-dev:arm64 (1.1-14build1) ... 308s Selecting previously unselected package zlib1g-dev:arm64. 308s Preparing to unpack .../28-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... 308s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 308s Selecting previously unselected package autopkgtest-satdep. 308s Preparing to unpack .../29-1-autopkgtest-satdep.deb ... 308s Unpacking autopkgtest-satdep (0) ... 308s Setting up libgomp1:arm64 (14-20240412-0ubuntu1) ... 308s Setting up libmpc3:arm64 (1.3.1-1build1) ... 308s Setting up libatomic1:arm64 (14-20240412-0ubuntu1) ... 308s Setting up libubsan1:arm64 (14-20240412-0ubuntu1) ... 308s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 308s Setting up libhwasan0:arm64 (14-20240412-0ubuntu1) ... 308s Setting up libasan8:arm64 (14-20240412-0ubuntu1) ... 308s Setting up libtsan2:arm64 (14-20240412-0ubuntu1) ... 308s Setting up libisl23:arm64 (0.26-3build1) ... 308s Setting up libssw0:arm64 (1.1-14build1) ... 308s Setting up libcc1-0:arm64 (14-20240412-0ubuntu1) ... 308s Setting up liblsan0:arm64 (14-20240412-0ubuntu1) ... 308s Setting up libitm1:arm64 (14-20240412-0ubuntu1) ... 308s Setting up cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 308s Setting up libssw-dev:arm64 (1.1-14build1) ... 308s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 308s Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu4) ... 308s Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu4) ... 308s Setting up cpp-13 (13.2.0-23ubuntu4) ... 308s Setting up gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 308s Setting up gcc-13 (13.2.0-23ubuntu4) ... 308s Setting up cpp (4:13.2.0-7ubuntu1) ... 308s Setting up g++-13-aarch64-linux-gnu (13.2.0-23ubuntu4) ... 308s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 308s Setting up g++-13 (13.2.0-23ubuntu4) ... 308s Setting up gcc (4:13.2.0-7ubuntu1) ... 308s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 308s Setting up g++ (4:13.2.0-7ubuntu1) ... 308s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 308s Setting up build-essential (12.10ubuntu1) ... 308s Setting up autopkgtest-satdep (0) ... 308s Processing triggers for man-db (2.12.0-4build2) ... 309s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 313s (Reading database ... 78900 files and directories currently installed.) 313s Removing autopkgtest-satdep (0) ... 313s autopkgtest [01:54:54]: test build-lib: [----------------------- 314s optimal_alignment_score: 21 sub-optimal_alignment_score: 8 target_begin: 9 target_end: 22 query_begin: 1 query_end: 15 314s 314s Target: 9 CTGACCCGG-AAATC 22 314s ||||*||||*||||| 314s Query: 1 CTGAGCCGGTAAATC 15 314s 315s ===== SSW result ===== 315s Best Smith-Waterman score: 21 315s Next-best Smith-Waterman score: 8 315s Reference start: 8 315s Reference end: 21 315s Query start: 0 315s Query end: 14 315s Next-best reference end: 4 315s Number of mismatches: 2 315s Cigar: 4=1X4=1I5= 315s ====================== 315s autopkgtest [01:54:56]: test build-lib: -----------------------] 316s build-lib PASS 316s autopkgtest [01:54:57]: test build-lib: - - - - - - - - - - results - - - - - - - - - - 316s autopkgtest [01:54:57]: test build-lib-java: preparing testbed 565s autopkgtest [01:59:06]: testbed dpkg architecture: arm64 566s autopkgtest [01:59:07]: testbed apt version: 2.7.14build2 566s autopkgtest [01:59:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 566s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 566s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 566s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 566s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [197 kB] 566s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [21.1 kB] 566s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [39.4 kB] 566s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [12.3 kB] 566s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [124 kB] 566s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [756 B] 567s Fetched 462 kB in 1s (694 kB/s) 567s Reading package lists... 569s Reading package lists... 569s Building dependency tree... 569s Reading state information... 570s Calculating upgrade... 570s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 570s Reading package lists... 571s Building dependency tree... 571s Reading state information... 571s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 572s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 572s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 572s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 572s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 573s Reading package lists... 573s Reading package lists... 574s Building dependency tree... 574s Reading state information... 574s Calculating upgrade... 574s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 574s Reading package lists... 575s Building dependency tree... 575s Reading state information... 575s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 581s Reading package lists... 581s Building dependency tree... 581s Reading state information... 582s Starting pkgProblemResolver with broken count: 0 582s Starting 2 pkgProblemResolver with broken count: 0 582s Done 582s The following additional packages will be installed: 582s ca-certificates-java default-jdk-headless default-jre-headless java-common 582s liblcms2-2 libpcsclite1 libssw-java openjdk-21-jdk-headless 582s openjdk-21-jre-headless 582s Suggested packages: 582s default-jre liblcms2-utils pcscd openjdk-21-demo openjdk-21-source 582s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 582s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 582s Recommended packages: 582s libcups2t64 libharfbuzz0b libasound2t64 582s The following NEW packages will be installed: 582s autopkgtest-satdep ca-certificates-java default-jdk-headless 582s default-jre-headless java-common liblcms2-2 libpcsclite1 libssw-java 582s openjdk-21-jdk-headless openjdk-21-jre-headless 582s 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 582s Need to get 128 MB/128 MB of archives. 582s After this operation, 300 MB of additional disk space will be used. 582s Get:1 /tmp/autopkgtest.l7S45a/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 583s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 ca-certificates-java all 20240118 [11.6 kB] 583s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 java-common all 0.75+exp1 [6798 B] 583s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 583s Get:5 http://ftpmaster.internal/ubuntu oracular/main arm64 libpcsclite1 arm64 2.0.3-1build1 [21.8 kB] 583s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 openjdk-21-jre-headless arm64 21.0.3+9-1ubuntu1 [45.8 MB] 584s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 584s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 openjdk-21-jdk-headless arm64 21.0.3+9-1ubuntu1 [81.6 MB] 586s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 default-jdk-headless arm64 2:1.21-75+exp1 [960 B] 586s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw-java arm64 1.1-14build1 [18.3 kB] 587s Fetched 128 MB in 4s (33.0 MB/s) 587s Selecting previously unselected package ca-certificates-java. 587s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77723 files and directories currently installed.) 587s Preparing to unpack .../0-ca-certificates-java_20240118_all.deb ... 587s Unpacking ca-certificates-java (20240118) ... 587s Selecting previously unselected package java-common. 587s Preparing to unpack .../1-java-common_0.75+exp1_all.deb ... 587s Unpacking java-common (0.75+exp1) ... 587s Selecting previously unselected package liblcms2-2:arm64. 587s Preparing to unpack .../2-liblcms2-2_2.14-2build1_arm64.deb ... 587s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 587s Selecting previously unselected package libpcsclite1:arm64. 587s Preparing to unpack .../3-libpcsclite1_2.0.3-1build1_arm64.deb ... 587s Unpacking libpcsclite1:arm64 (2.0.3-1build1) ... 587s Selecting previously unselected package openjdk-21-jre-headless:arm64. 587s Preparing to unpack .../4-openjdk-21-jre-headless_21.0.3+9-1ubuntu1_arm64.deb ... 587s Unpacking openjdk-21-jre-headless:arm64 (21.0.3+9-1ubuntu1) ... 588s Selecting previously unselected package default-jre-headless. 588s Preparing to unpack .../5-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 588s Unpacking default-jre-headless (2:1.21-75+exp1) ... 588s Selecting previously unselected package openjdk-21-jdk-headless:arm64. 588s Preparing to unpack .../6-openjdk-21-jdk-headless_21.0.3+9-1ubuntu1_arm64.deb ... 588s Unpacking openjdk-21-jdk-headless:arm64 (21.0.3+9-1ubuntu1) ... 589s Selecting previously unselected package default-jdk-headless. 589s Preparing to unpack .../7-default-jdk-headless_2%3a1.21-75+exp1_arm64.deb ... 589s Unpacking default-jdk-headless (2:1.21-75+exp1) ... 589s Selecting previously unselected package libssw-java. 589s Preparing to unpack .../8-libssw-java_1.1-14build1_arm64.deb ... 589s Unpacking libssw-java (1.1-14build1) ... 589s Selecting previously unselected package autopkgtest-satdep. 589s Preparing to unpack .../9-2-autopkgtest-satdep.deb ... 589s Unpacking autopkgtest-satdep (0) ... 589s Setting up liblcms2-2:arm64 (2.14-2build1) ... 589s Setting up java-common (0.75+exp1) ... 589s Setting up libssw-java (1.1-14build1) ... 589s Setting up libpcsclite1:arm64 (2.0.3-1build1) ... 589s Setting up ca-certificates-java (20240118) ... 589s No JRE found. Skipping Java certificates setup. 589s Setting up openjdk-21-jre-headless:arm64 (21.0.3+9-1ubuntu1) ... 589s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 589s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 589s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 589s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 589s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 589s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 589s Processing triggers for man-db (2.12.0-4build2) ... 590s Processing triggers for ca-certificates-java (20240118) ... 591s Adding debian:ACCVRAIZ1.pem 591s Adding debian:AC_RAIZ_FNMT-RCM.pem 591s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 591s Adding debian:ANF_Secure_Server_Root_CA.pem 591s Adding debian:Actalis_Authentication_Root_CA.pem 591s Adding debian:AffirmTrust_Commercial.pem 591s Adding debian:AffirmTrust_Networking.pem 591s Adding debian:AffirmTrust_Premium.pem 591s Adding debian:AffirmTrust_Premium_ECC.pem 591s Adding debian:Amazon_Root_CA_1.pem 591s Adding debian:Amazon_Root_CA_2.pem 591s Adding debian:Amazon_Root_CA_3.pem 591s Adding debian:Amazon_Root_CA_4.pem 591s Adding debian:Atos_TrustedRoot_2011.pem 591s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 591s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 591s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 591s Adding debian:BJCA_Global_Root_CA1.pem 591s Adding debian:BJCA_Global_Root_CA2.pem 591s Adding debian:Baltimore_CyberTrust_Root.pem 591s Adding debian:Buypass_Class_2_Root_CA.pem 591s Adding debian:Buypass_Class_3_Root_CA.pem 591s Adding debian:CA_Disig_Root_R2.pem 591s Adding debian:CFCA_EV_ROOT.pem 591s Adding debian:COMODO_Certification_Authority.pem 591s Adding debian:COMODO_ECC_Certification_Authority.pem 591s Adding debian:COMODO_RSA_Certification_Authority.pem 591s Adding debian:Certainly_Root_E1.pem 591s Adding debian:Certainly_Root_R1.pem 591s Adding debian:Certigna.pem 591s Adding debian:Certigna_Root_CA.pem 591s Adding debian:Certum_EC-384_CA.pem 591s Adding debian:Certum_Trusted_Network_CA.pem 591s Adding debian:Certum_Trusted_Network_CA_2.pem 591s Adding debian:Certum_Trusted_Root_CA.pem 591s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 591s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 591s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 591s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 591s Adding debian:Comodo_AAA_Services_root.pem 591s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 591s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 591s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 591s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 591s Adding debian:DigiCert_Assured_ID_Root_CA.pem 591s Adding debian:DigiCert_Assured_ID_Root_G2.pem 591s Adding debian:DigiCert_Assured_ID_Root_G3.pem 591s Adding debian:DigiCert_Global_Root_CA.pem 591s Adding debian:DigiCert_Global_Root_G2.pem 591s Adding debian:DigiCert_Global_Root_G3.pem 591s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 591s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 591s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 591s Adding debian:DigiCert_Trusted_Root_G4.pem 591s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 591s Adding debian:Entrust_Root_Certification_Authority.pem 591s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 591s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 591s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 591s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 591s Adding debian:GLOBALTRUST_2020.pem 591s Adding debian:GTS_Root_R1.pem 591s Adding debian:GTS_Root_R2.pem 591s Adding debian:GTS_Root_R3.pem 591s Adding debian:GTS_Root_R4.pem 591s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 591s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 591s Adding debian:GlobalSign_Root_CA.pem 591s Adding debian:GlobalSign_Root_CA_-_R3.pem 591s Adding debian:GlobalSign_Root_CA_-_R6.pem 591s Adding debian:GlobalSign_Root_E46.pem 591s Adding debian:GlobalSign_Root_R46.pem 591s Adding debian:Go_Daddy_Class_2_CA.pem 591s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 591s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 591s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 591s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 591s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 591s Adding debian:HiPKI_Root_CA_-_G1.pem 591s Adding debian:Hongkong_Post_Root_CA_3.pem 591s Adding debian:ISRG_Root_X1.pem 591s Adding debian:ISRG_Root_X2.pem 591s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 591s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 591s Adding debian:Izenpe.com.pem 591s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 591s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 591s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 591s Adding debian:NAVER_Global_Root_Certification_Authority.pem 591s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 591s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 591s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 591s Adding debian:QuoVadis_Root_CA_1_G3.pem 591s Adding debian:QuoVadis_Root_CA_2.pem 591s Adding debian:QuoVadis_Root_CA_2_G3.pem 591s Adding debian:QuoVadis_Root_CA_3.pem 591s Adding debian:QuoVadis_Root_CA_3_G3.pem 591s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 591s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 591s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 591s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 591s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 591s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 591s Adding debian:SZAFIR_ROOT_CA2.pem 591s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 591s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 591s Adding debian:SecureSign_RootCA11.pem 591s Adding debian:SecureTrust_CA.pem 591s Adding debian:Secure_Global_CA.pem 591s Adding debian:Security_Communication_ECC_RootCA1.pem 591s Adding debian:Security_Communication_RootCA2.pem 591s Adding debian:Security_Communication_RootCA3.pem 591s Adding debian:Security_Communication_Root_CA.pem 591s Adding debian:Starfield_Class_2_CA.pem 591s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 591s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 591s Adding debian:SwissSign_Gold_CA_-_G2.pem 591s Adding debian:SwissSign_Silver_CA_-_G2.pem 591s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 591s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 591s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 591s Adding debian:TWCA_Global_Root_CA.pem 591s Adding debian:TWCA_Root_Certification_Authority.pem 591s Adding debian:TeliaSonera_Root_CA_v1.pem 591s Adding debian:Telia_Root_CA_v2.pem 591s Adding debian:TrustAsia_Global_Root_CA_G3.pem 591s Adding debian:TrustAsia_Global_Root_CA_G4.pem 591s Adding debian:Trustwave_Global_Certification_Authority.pem 591s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 591s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 591s Adding debian:TunTrust_Root_CA.pem 591s Adding debian:UCA_Extended_Validation_Root.pem 591s Adding debian:UCA_Global_G2_Root.pem 591s Adding debian:USERTrust_ECC_Certification_Authority.pem 591s Adding debian:USERTrust_RSA_Certification_Authority.pem 591s Adding debian:XRamp_Global_CA_Root.pem 591s Adding debian:certSIGN_ROOT_CA.pem 591s Adding debian:certSIGN_Root_CA_G2.pem 591s Adding debian:e-Szigno_Root_CA_2017.pem 591s Adding debian:ePKI_Root_Certification_Authority.pem 591s Adding debian:emSign_ECC_Root_CA_-_C3.pem 591s Adding debian:emSign_ECC_Root_CA_-_G3.pem 591s Adding debian:emSign_Root_CA_-_C1.pem 591s Adding debian:emSign_Root_CA_-_G1.pem 591s Adding debian:vTrus_ECC_Root_CA.pem 591s Adding debian:vTrus_Root_CA.pem 591s done. 591s Setting up openjdk-21-jdk-headless:arm64 (21.0.3+9-1ubuntu1) ... 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 591s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode 591s Setting up default-jre-headless (2:1.21-75+exp1) ... 591s Setting up default-jdk-headless (2:1.21-75+exp1) ... 591s Setting up autopkgtest-satdep (0) ... 595s (Reading database ... 78210 files and directories currently installed.) 595s Removing autopkgtest-satdep (0) ... 598s autopkgtest [01:59:39]: test build-lib-java: [----------------------- 600s Aligning nucleotides 600s score1=21 score2=8 ref_begin1=8 ref_end1=21 read_begin1=0 read_end1=14 ref_end2=4 cigar=9M1I5M 600s autopkgtest [01:59:41]: test build-lib-java: -----------------------] 601s build-lib-java PASS 601s autopkgtest [01:59:42]: test build-lib-java: - - - - - - - - - - results - - - - - - - - - - 601s autopkgtest [01:59:42]: test run-example: preparing testbed 834s autopkgtest [02:03:35]: testbed dpkg architecture: arm64 834s autopkgtest [02:03:35]: testbed apt version: 2.7.14build2 834s autopkgtest [02:03:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 835s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 835s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [197 kB] 835s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 835s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 835s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [21.1 kB] 835s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [39.4 kB] 835s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [12.3 kB] 835s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [124 kB] 835s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [756 B] 835s Fetched 462 kB in 1s (757 kB/s) 835s Reading package lists... 837s Reading package lists... 838s Building dependency tree... 838s Reading state information... 838s Calculating upgrade... 839s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 839s Reading package lists... 839s Building dependency tree... 839s Reading state information... 840s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 840s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 840s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 840s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 841s Hit:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 842s Reading package lists... 842s Reading package lists... 842s Building dependency tree... 842s Reading state information... 843s Calculating upgrade... 843s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 843s Reading package lists... 843s Building dependency tree... 843s Reading state information... 844s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 849s Reading package lists... 849s Building dependency tree... 849s Reading state information... 849s Starting pkgProblemResolver with broken count: 0 849s Starting 2 pkgProblemResolver with broken count: 0 849s Done 850s The following additional packages will be installed: 850s libssw0 ssw-align 850s The following NEW packages will be installed: 850s autopkgtest-satdep libssw0 ssw-align 850s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 850s Need to get 42.6 kB/43.3 kB of archives. 850s After this operation, 169 kB of additional disk space will be used. 850s Get:1 /tmp/autopkgtest.l7S45a/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 850s Get:2 http://ftpmaster.internal/ubuntu oracular/universe arm64 libssw0 arm64 1.1-14build1 [21.4 kB] 850s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 ssw-align arm64 1.1-14build1 [21.2 kB] 851s Fetched 42.6 kB in 0s (128 kB/s) 851s Selecting previously unselected package libssw0:arm64. 851s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77723 files and directories currently installed.) 851s Preparing to unpack .../libssw0_1.1-14build1_arm64.deb ... 851s Unpacking libssw0:arm64 (1.1-14build1) ... 851s Selecting previously unselected package ssw-align. 851s Preparing to unpack .../ssw-align_1.1-14build1_arm64.deb ... 851s Unpacking ssw-align (1.1-14build1) ... 851s Selecting previously unselected package autopkgtest-satdep. 851s Preparing to unpack .../3-autopkgtest-satdep.deb ... 851s Unpacking autopkgtest-satdep (0) ... 851s Setting up libssw0:arm64 (1.1-14build1) ... 851s Setting up ssw-align (1.1-14build1) ... 851s Setting up autopkgtest-satdep (0) ... 851s Processing triggers for man-db (2.12.0-4build2) ... 852s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 855s (Reading database ... 77735 files and directories currently installed.) 855s Removing autopkgtest-satdep (0) ... 858s autopkgtest [02:03:59]: test run-example: [----------------------- 858s target_name: chr1 858s query_name: chr1 858s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 858s 858s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 858s 858s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 858s 858s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 858s 858s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 858s 858s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 858s 858s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 858s 858s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 858s 858s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 858s 858s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 858s 858s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 858s 858s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 858s 858s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 858s 858s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 858s 858s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 858s 858s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 858s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 858s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 858s 862s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 862s 862s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 862s ||||||||||||||||||||||||||||||||||||||||| 862s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 862s 862s target_name: chr2 862s query_name: chr1 862s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 862s 862s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 862s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 862s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 862s 862s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 862s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 862s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 862s 862s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 862s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 862s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 862s 862s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 862s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 862s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 862s 862s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 862s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 862s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 862s 862s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 862s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 862s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 862s 862s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 862s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 862s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 862s 862s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 862s | *||*||||||| ||**| | |||||||| |*||| ||| 862s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 862s 862s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 862s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 862s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 862s 862s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 862s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 862s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 862s 862s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 862s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 862s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 862s 862s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 862s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 862s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 862s 862s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 862s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 862s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 862s 862s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 862s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 862s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 862s 862s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 862s || || || |||| || || || |||*|||| |||| |*|| || ||| || 862s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 862s 862s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 862s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 862s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 862s 862s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 862s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 862s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 862s 862s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 862s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 862s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 862s 862s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 862s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 862s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 862s 862s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 862s *||||| |*|||*||||| 862s Query: 955 --TACTTC-TAATTTTTCAC 971 862s 862s target_name: chr3 862s query_name: chr1 862s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 862s 862s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 862s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 862s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 862s 862s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 862s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 862s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 862s 862s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 862s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 862s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 862s 862s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 862s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 862s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 862s 862s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 862s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 862s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 862s 862s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 862s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 862s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 862s 862s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 862s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 862s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 862s 862s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 862s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 862s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 862s 862s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 862s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 862s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 862s 862s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 862s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 862s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 862s 862s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 862s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 862s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 862s 862s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 862s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 862s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 862s 862s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 862s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 862s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 862s 862s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 862s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 862s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 862s 862s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 862s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 862s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 862s 862s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 862s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 862s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 862s 862s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 862s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 862s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 862s 862s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 862s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 862s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 862s 862s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 862s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 862s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 862s 862s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 862s *|||| |*|||||*||| || |*|||*||*|| 862s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 862s 862s target_name: chr4 862s query_name: chr1 862s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 862s 862s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 862s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 862s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 862s 862s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 862s ||| || |||***||| |||| |||| |||| || ||| || 862s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 862s 862s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 862s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 862s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 862s 862s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 862s || |||| ||||||| || |*|||||*||||*|*|| 862s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 862s 862s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 862s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 862s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 862s 862s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 862s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 862s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 862s 862s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 862s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 862s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 862s 862s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 862s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 862s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 862s 862s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 862s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 862s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 862s 862s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 862s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 862s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 862s 862s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 862s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 862s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 862s 862s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 862s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 862s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 862s 862s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 862s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 862s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 862s 862s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 862s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 862s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 862s 862s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 862s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 862s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 862s 862s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 862s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 862s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 862s 862s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 862s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 862s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 862s 862s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 862s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 862s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 862s 862s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 862s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 862s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 862s 862s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 862s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 862s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CACPU time: 4.086392 seconds 862s TCACATAAT 986 862s 862s Target: 48049 GAA---AT--AAAGTA 48059 862s ||| || ||| || 862s Query: 987 GAATGGATCCAAA-TA 1001 862s 862s target_name: chr5 862s query_name: chr1 862s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 862s 862s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 862s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 862s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 862s 862s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 862s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 862s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 862s 862s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 862s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 862s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 862s 862s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 862s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 862s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 862s 862s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 862s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 862s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 862s 862s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 862s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 862s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 862s 862s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 862s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 862s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 862s 862s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 862s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 862s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 862s 862s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 862s | |||||| ||||*|| | || | ||| |*||*||| || 862s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 862s 862s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 862s |||****| |||| |*|*|***|||*| ||*|*| ||| || 862s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 862s 862s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 862s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 862s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 862s 862s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 862s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 862s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 862s 862s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 862s | | || |||| ||||| |*|| |||| ||||*||| |||| || 862s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 862s 862s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 862s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 862s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 862s 862s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 862s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 862s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 862s 862s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 862s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 862s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 862s 862s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 862s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 862s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 862s 862s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 862s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 862s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 862s 862s Target: 9707 TGTTGATTGTTTC-CTTT 9723 862s |**|*||| |||| |||| 862s Query: 958 TTCTAATT-TTTCACTTT 974 862s 862s target_name: chr1 862s query_name: chr1 862s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 862s 862s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 862s 862s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 862s 862s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 862s 862s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 862s 862s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 862s 862s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 862s 862s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 862s 862s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 862s 862s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 862s 862s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 862s 862s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 862s 862s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 862s 862s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 862s 862s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 862s 862s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 862s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 862s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 862s 866s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 866s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 866s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 866s 866s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 866s ||||||||||||||||||||||||||||||||||||||||| 866s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 866s 866s target_name: chr2 866s query_name: chr1 866s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 866s 866s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 866s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 866s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 866s 866s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 866s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 866s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 866s 866s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 866s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 866s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 866s 866s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 866s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 866s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 866s 866s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 866s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 866s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 866s 866s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 866s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 866s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 866s 866s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 866s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 866s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 866s 866s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 866s | *||*||||||| ||**| | |||||||| |*||| ||| 866s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 866s 866s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 866s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 866s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 866s 866s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 866s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 866s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 866s 866s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 866s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 866s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 866s 866s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 866s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 866s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 866s 866s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 866s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 866s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 866s 866s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 866s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 866s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 866s 866s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 866s || || || |||| || || || |||*|||| |||| |*|| || ||| || 866s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 866s 866s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 866s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 866s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 866s 866s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 866s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 866s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 866s 866s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 866s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 866s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 866s 866s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 866s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 866s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 866s 866s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 866s *||||| |*|||*||||| 866s Query: 955 --TACTTC-TAATTTTTCAC 971 866s 866s target_name: chr3 866s query_name: chr1 866s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 866s 866s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 866s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 866s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 866s 866s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 866s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 866s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 866s 866s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 866s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 866s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 866s 866s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 866s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 866s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 866s 866s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 866s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 866s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 866s 866s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 866s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 866s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 866s 866s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 866s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 866s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 866s 866s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 866s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 866s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 866s 866s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 866s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 866s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 866s 866s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 866s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 866s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 866s 866s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 866s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 866s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 866s 866s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 866s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 866s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 866s 866s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 866s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 866s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 866s 866s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 866s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 866s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 866s 866s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 866s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 866s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 866s 866s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 866s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 866s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 866s 866s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 866s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 866s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 866s 866s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 866s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 866s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 866s 866s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 866s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 866s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 866s 866s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 866s *|||| |*|||||*||| || |*|||*||*|| 866s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 866s 866s target_name: chr4 866s query_name: chr1 866s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 866s 866s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 866s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 866s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 866s 866s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 866s ||| || |||***||| |||| |||| |||| || ||| || 866s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 866s 866s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 866s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 866s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 866s 866s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 866s || |||| ||||||| || |*|||||*||||*|*|| 866s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 866s 866s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 866s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 866s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 866s 866s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 866s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 866s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 866s 866s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 866s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 866s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 866s 866s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 866s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 866s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 866s 866s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 866s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 866s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 866s 866s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 866s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 866s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 866s 866s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 866s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 866s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 866s 866s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 866s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 866s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 866s 866s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 866s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 866s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 866s 866s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 866s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 866s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 866s 866s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 866s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 866s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 866s 866s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 866s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 866s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 866s 866s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 866s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 866s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 866s 866s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 866s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 866s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 866s 866s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 866s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 866s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 866s 866s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 866s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 866s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 866s 866s Target: 48049 GAA---AT--AAAGTA 48059 866s ||| || ||| || 866s Query: 987 GAATGGATCCAAA-TA 1001 866s 866s target_name: chr5 866s query_name: chr1 866s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 866s 866s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 866s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 866s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 866s 866s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 866s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 866s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 866s 866s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 866s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 866s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 866s 866s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 866s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 866s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 866s 866s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 866s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 866s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 866s 866s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 866s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 866s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 866s 866s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 866s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 866s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 866s 866s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 866s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 866s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 866s 866s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 866s | |||||| ||||*|| | || | ||| |*||*||| || 866s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 866s 866s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 866s |||****| |||| |*|*|***|||*| ||*|*| ||| || 866s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 866s 866s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 866s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 866s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 866s 866s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 866s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 866s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 866s 866s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 866s | | || |||| ||||| |*|| |||| ||||*||| |||| || 866s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 866s 866s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 866s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 866s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 866s 866s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 866s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 866s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 866s 866s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 866s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 866s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 866s 866s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 866s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 866s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 866s 866s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 866s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 866s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 866s 866s Target: 9707 TGTTGATTGTTTC-CTTT 9723 866s |**|*||| |||| |||| 866s Query: 958 TTCTAATT-TTTCACTTT 974 866s 866s CPU time: 4.153111 seconds 867s autopkgtest [02:04:08]: test run-example: -----------------------] 868s run-example PASS 868s autopkgtest [02:04:09]: test run-example: - - - - - - - - - - results - - - - - - - - - - 868s autopkgtest [02:04:09]: @@@@@@@@@@@@@@@@@@@@ summary 868s build-lib PASS 868s build-lib-java PASS 868s run-example PASS 872s Creating nova instance adt-oracular-arm64-libssw-20240501-014941-juju-7f2275-prod-proposed-migration-environment-3-b6b58686-70ea-4e13-b6b3-77b23ccd3abc from image adt/ubuntu-oracular-arm64-server-20240430.img (UUID b5cec383-1b1f-4037-877b-d747a6eea977)... 872s Creating nova instance adt-oracular-arm64-libssw-20240501-014941-juju-7f2275-prod-proposed-migration-environment-3-b6b58686-70ea-4e13-b6b3-77b23ccd3abc from image adt/ubuntu-oracular-arm64-server-20240430.img (UUID b5cec383-1b1f-4037-877b-d747a6eea977)... 872s Creating nova instance adt-oracular-arm64-libssw-20240501-014941-juju-7f2275-prod-proposed-migration-environment-3-b6b58686-70ea-4e13-b6b3-77b23ccd3abc from image adt/ubuntu-oracular-arm64-server-20240430.img (UUID b5cec383-1b1f-4037-877b-d747a6eea977)...