0s autopkgtest [14:42:59]: starting date and time: 2024-08-03 14:42:59+0000 0s autopkgtest [14:42:59]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [14:42:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wl2cu51f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cmake --apt-upgrade seqan-raptor --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=cmake/3.30.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-46.secgroup --name adt-oracular-arm64-seqan-raptor-20240803-140437-juju-7f2275-prod-proposed-migration-environment-2-044e5ec3-7dea-4910-98f6-97d8b5ef0fad --image adt/ubuntu-oracular-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 106s autopkgtest [14:44:45]: testbed dpkg architecture: arm64 106s autopkgtest [14:44:45]: testbed apt version: 2.9.6 106s autopkgtest [14:44:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 107s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 108s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [661 kB] 108s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8552 B] 108s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [75.0 kB] 108s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [10.5 kB] 108s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [141 kB] 108s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [3740 B] 108s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 108s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 108s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [695 kB] 108s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [17.7 kB] 108s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [11.9 kB] 108s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [552 B] 110s Fetched 1796 kB in 1s (1644 kB/s) 110s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Calculating upgrade... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 115s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 116s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 116s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 117s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s Calculating upgrade... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [14:45:01]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 02:32:42 UTC 2024 122s autopkgtest [14:45:01]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-raptor 125s Get:1 http://ftpmaster.internal/ubuntu oracular/universe seqan-raptor 3.0.1+ds-5 (dsc) [2642 B] 125s Get:2 http://ftpmaster.internal/ubuntu oracular/universe seqan-raptor 3.0.1+ds-5 (tar) [3085 kB] 125s Get:3 http://ftpmaster.internal/ubuntu oracular/universe seqan-raptor 3.0.1+ds-5 (diff) [10.3 kB] 125s gpgv: Signature made Wed Sep 6 13:05:19 2023 UTC 125s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 125s gpgv: Can't check signature: No public key 125s dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found 126s autopkgtest [14:45:05]: testing package seqan-raptor version 3.0.1+ds-5 127s autopkgtest [14:45:06]: build not needed 128s autopkgtest [14:45:07]: test cwl: preparing testbed 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 131s The following additional packages will be installed: 131s cwl-upgrader cwltool fontconfig fonts-glyphicons-halflings graphviz libann0 131s libcairo2 libcares2 libcdt5 libcgraph6 libdatrie1 libgts-0.7-5t64 libgvc6 131s libgvpr2 libice6 libjs-bootstrap liblab-gamut1 libltdl7 libnode115 131s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 131s libpixman-1-0 libsm6 libthai-data libthai0 libxaw7 libxcb-render0 131s libxcb-shm0 libxmu6 libxrender1 libxslt1.1 libxt6t64 libyaml-cpp0.8 131s node-acorn node-cjs-module-lexer node-undici node-xtend nodejs python3-arcp 131s python3-argcomplete python3-cachecontrol python3-coloredlogs 131s python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly 131s python3-isodate python3-lxml python3-mistune python3-msgpack 131s python3-mypy-extensions python3-networkx python3-packaging python3-prov 131s python3-psutil python3-pydot python3-rdflib python3-ruamel.yaml 131s python3-ruamel.yaml.clib python3-schema-salad python3-shellescape 131s python3-six python3-spython seqan-raptor seqan-raptor-doc x11-common 131s Suggested packages: 131s podman | docker.io | singularity-container cwltool-doc gsfonts graphviz-doc 131s npm node-corepack cwl-utils python-lxml-doc python3-gdal python3-matplotlib 131s python3-pygraphviz python3-scipy python-prov-doc python-rdflib-doc 131s singularity-container 131s Recommended packages: 131s fonts-liberation libgts-bin nodejs-doc python3-bs4 python3-cssselect 131s python3-html5lib python3-numpy python3-sparqlwrapper black 131s The following NEW packages will be installed: 131s autopkgtest-satdep cwl-upgrader cwltool fontconfig 131s fonts-glyphicons-halflings graphviz libann0 libcairo2 libcares2 libcdt5 131s libcgraph6 libdatrie1 libgts-0.7-5t64 libgvc6 libgvpr2 libice6 131s libjs-bootstrap liblab-gamut1 libltdl7 libnode115 libpango-1.0-0 131s libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libsm6 131s libthai-data libthai0 libxaw7 libxcb-render0 libxcb-shm0 libxmu6 libxrender1 131s libxslt1.1 libxt6t64 libyaml-cpp0.8 node-acorn node-cjs-module-lexer 131s node-undici node-xtend nodejs python3-arcp python3-argcomplete 131s python3-cachecontrol python3-coloredlogs python3-cwl-utils python3-dateutil 131s python3-filelock python3-humanfriendly python3-isodate python3-lxml 131s python3-mistune python3-msgpack python3-mypy-extensions python3-networkx 131s python3-packaging python3-prov python3-psutil python3-pydot python3-rdflib 131s python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad 131s python3-shellescape python3-six python3-spython seqan-raptor 131s seqan-raptor-doc x11-common 131s 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 37.2 MB/37.2 MB of archives. 131s After this operation, 188 MB of additional disk space will be used. 131s Get:1 /tmp/autopkgtest.APcIdS/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [740 B] 131s Get:2 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8-1build1 [126 kB] 131s Get:3 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB] 131s Get:4 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-msgpack arm64 1.0.3-3build2 [77.9 kB] 132s Get:5 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 132s Get:6 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mistune all 3.0.2-1 [32.8 kB] 132s Get:7 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-mypy-extensions all 1.0.0-1 [6148 B] 132s Get:8 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-isodate all 0.6.1-2 [24.3 kB] 132s Get:9 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-rdflib all 7.0.0-1 [405 kB] 132s Get:10 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-filelock all 3.15.4-1 [12.8 kB] 132s Get:11 http://ftpmaster.internal/ubuntu oracular/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 132s Get:12 http://ftpmaster.internal/ubuntu oracular/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 132s Get:13 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-schema-salad arm64 8.5.20240410123758-1 [958 kB] 132s Get:14 http://ftpmaster.internal/ubuntu oracular/universe arm64 cwl-upgrader all 1.2.11-1 [16.0 kB] 132s Get:15 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-argcomplete all 3.4.0-2 [34.7 kB] 132s Get:16 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-humanfriendly all 10.0-5 [70.5 kB] 132s Get:17 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 132s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-packaging all 24.1-1 [41.4 kB] 132s Get:19 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-cwl-utils all 0.33-1 [119 kB] 132s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-six all 1.16.0-6 [13.0 kB] 132s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 132s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 libxslt1.1 arm64 1.1.39-0exp1build1 [166 kB] 132s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-lxml arm64 5.2.2-1 [1176 kB] 132s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 132s Get:25 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-prov all 2.0.1-1 [95.5 kB] 132s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB] 132s Get:27 http://ftpmaster.internal/ubuntu oracular/universe arm64 libann0 arm64 1.1.2+doc-9build1 [25.7 kB] 132s Get:28 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcdt5 arm64 2.42.4-1 [20.5 kB] 132s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcgraph6 arm64 2.42.4-1 [45.0 kB] 132s Get:30 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2build1 [154 kB] 132s Get:31 http://ftpmaster.internal/ubuntu oracular/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 132s Get:32 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 132s Get:33 http://ftpmaster.internal/ubuntu oracular/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 132s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 132s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 libcairo2 arm64 1.18.0-3build1 [555 kB] 132s Get:36 http://ftpmaster.internal/ubuntu oracular/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 132s Get:37 http://ftpmaster.internal/ubuntu oracular/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 132s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 132s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 132s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 132s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 libpango-1.0-0 arm64 1.54.0+ds-1 [230 kB] 132s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-1 [41.7 kB] 132s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-1 [27.2 kB] 132s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 libpathplan4 arm64 2.42.4-1 [22.7 kB] 132s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgvc6 arm64 2.42.4-1 [692 kB] 132s Get:46 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgvpr2 arm64 2.42.4-1 [185 kB] 132s Get:47 http://ftpmaster.internal/ubuntu oracular/universe arm64 liblab-gamut1 arm64 2.42.4-1 [1832 kB] 132s Get:48 http://ftpmaster.internal/ubuntu oracular/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 132s Get:49 http://ftpmaster.internal/ubuntu oracular/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 132s Get:50 http://ftpmaster.internal/ubuntu oracular/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 132s Get:51 http://ftpmaster.internal/ubuntu oracular/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 132s Get:52 http://ftpmaster.internal/ubuntu oracular/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 132s Get:53 http://ftpmaster.internal/ubuntu oracular/main arm64 libxaw7 arm64 2:1.0.14-1build2 [183 kB] 132s Get:54 http://ftpmaster.internal/ubuntu oracular/universe arm64 graphviz arm64 2.42.4-1 [610 kB] 132s Get:55 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-pydot all 2.0.0-3 [24.9 kB] 132s Get:56 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-shellescape all 3.4.1-5 [5064 B] 132s Get:57 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-spython all 0.3.13-2 [56.2 kB] 132s Get:58 http://ftpmaster.internal/ubuntu oracular/universe arm64 python3-arcp all 0.2.1-6 [13.6 kB] 132s Get:59 http://ftpmaster.internal/ubuntu oracular/universe arm64 cwltool all 3.1.20240508115724-1 [509 kB] 132s Get:60 http://ftpmaster.internal/ubuntu oracular/main arm64 libcares2 arm64 1.32.3-1 [82.8 kB] 133s Get:61 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-xtend all 4.0.2-3 [3902 B] 133s Get:62 http://ftpmaster.internal/ubuntu oracular/universe arm64 nodejs arm64 20.15.0+dfsg-1ubuntu3 [332 kB] 133s Get:63 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 133s Get:64 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 133s Get:65 http://ftpmaster.internal/ubuntu oracular/universe arm64 node-undici all 5.28.4+dfsg1+~cs23.12.11-2 [321 kB] 133s Get:66 http://ftpmaster.internal/ubuntu oracular/universe arm64 libnode115 arm64 20.15.0+dfsg-1ubuntu3 [12.6 MB] 133s Get:67 http://ftpmaster.internal/ubuntu oracular/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-6build1 [112 kB] 133s Get:68 http://ftpmaster.internal/ubuntu oracular/universe arm64 seqan-raptor arm64 3.0.1+ds-5 [648 kB] 133s Get:69 http://ftpmaster.internal/ubuntu oracular/universe arm64 seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 133s Fetched 37.2 MB in 2s (17.8 MB/s) 134s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78315 files and directories currently installed.) 134s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8-1build1_arm64.deb ... 134s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8-1build1) ... 134s Selecting previously unselected package python3-ruamel.yaml. 134s Preparing to unpack .../01-python3-ruamel.yaml_0.17.21-1_all.deb ... 134s Unpacking python3-ruamel.yaml (0.17.21-1) ... 134s Selecting previously unselected package python3-msgpack. 134s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_arm64.deb ... 134s Unpacking python3-msgpack (1.0.3-3build2) ... 134s Selecting previously unselected package python3-cachecontrol. 134s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 134s Unpacking python3-cachecontrol (0.14.0-1) ... 134s Selecting previously unselected package python3-mistune. 134s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 134s Unpacking python3-mistune (3.0.2-1) ... 134s Selecting previously unselected package python3-mypy-extensions. 134s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 134s Unpacking python3-mypy-extensions (1.0.0-1) ... 134s Selecting previously unselected package python3-isodate. 134s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 134s Unpacking python3-isodate (0.6.1-2) ... 134s Selecting previously unselected package python3-rdflib. 134s Preparing to unpack .../07-python3-rdflib_7.0.0-1_all.deb ... 134s Unpacking python3-rdflib (7.0.0-1) ... 134s Selecting previously unselected package python3-filelock. 134s Preparing to unpack .../08-python3-filelock_3.15.4-1_all.deb ... 134s Unpacking python3-filelock (3.15.4-1) ... 134s Selecting previously unselected package fonts-glyphicons-halflings. 134s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 134s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 134s Selecting previously unselected package libjs-bootstrap. 134s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 134s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 134s Selecting previously unselected package python3-schema-salad. 134s Preparing to unpack .../11-python3-schema-salad_8.5.20240410123758-1_arm64.deb ... 134s Unpacking python3-schema-salad (8.5.20240410123758-1) ... 135s Selecting previously unselected package cwl-upgrader. 135s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 135s Unpacking cwl-upgrader (1.2.11-1) ... 135s Selecting previously unselected package python3-argcomplete. 135s Preparing to unpack .../13-python3-argcomplete_3.4.0-2_all.deb ... 135s Unpacking python3-argcomplete (3.4.0-2) ... 135s Selecting previously unselected package python3-humanfriendly. 135s Preparing to unpack .../14-python3-humanfriendly_10.0-5_all.deb ... 135s Unpacking python3-humanfriendly (10.0-5) ... 135s Selecting previously unselected package python3-coloredlogs. 135s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 135s Unpacking python3-coloredlogs (15.0.1-1) ... 135s Selecting previously unselected package python3-packaging. 136s Preparing to unpack .../16-python3-packaging_24.1-1_all.deb ... 136s Unpacking python3-packaging (24.1-1) ... 136s Selecting previously unselected package python3-cwl-utils. 136s Preparing to unpack .../17-python3-cwl-utils_0.33-1_all.deb ... 136s Unpacking python3-cwl-utils (0.33-1) ... 136s Selecting previously unselected package python3-six. 136s Preparing to unpack .../18-python3-six_1.16.0-6_all.deb ... 136s Unpacking python3-six (1.16.0-6) ... 136s Selecting previously unselected package python3-dateutil. 136s Preparing to unpack .../19-python3-dateutil_2.9.0-2_all.deb ... 136s Unpacking python3-dateutil (2.9.0-2) ... 136s Selecting previously unselected package libxslt1.1:arm64. 136s Preparing to unpack .../20-libxslt1.1_1.1.39-0exp1build1_arm64.deb ... 136s Unpacking libxslt1.1:arm64 (1.1.39-0exp1build1) ... 136s Selecting previously unselected package python3-lxml:arm64. 136s Preparing to unpack .../21-python3-lxml_5.2.2-1_arm64.deb ... 136s Unpacking python3-lxml:arm64 (5.2.2-1) ... 137s Selecting previously unselected package python3-networkx. 137s Preparing to unpack .../22-python3-networkx_3.2.1-4ubuntu1_all.deb ... 137s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 137s Selecting previously unselected package python3-prov. 137s Preparing to unpack .../23-python3-prov_2.0.1-1_all.deb ... 137s Unpacking python3-prov (2.0.1-1) ... 137s Selecting previously unselected package python3-psutil. 138s Preparing to unpack .../24-python3-psutil_5.9.8-2build2_arm64.deb ... 138s Unpacking python3-psutil (5.9.8-2build2) ... 138s Selecting previously unselected package libann0. 138s Preparing to unpack .../25-libann0_1.1.2+doc-9build1_arm64.deb ... 138s Unpacking libann0 (1.1.2+doc-9build1) ... 138s Selecting previously unselected package libcdt5:arm64. 138s Preparing to unpack .../26-libcdt5_2.42.4-1_arm64.deb ... 138s Unpacking libcdt5:arm64 (2.42.4-1) ... 138s Selecting previously unselected package libcgraph6:arm64. 138s Preparing to unpack .../27-libcgraph6_2.42.4-1_arm64.deb ... 138s Unpacking libcgraph6:arm64 (2.42.4-1) ... 138s Selecting previously unselected package libgts-0.7-5t64:arm64. 138s Preparing to unpack .../28-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_arm64.deb ... 138s Unpacking libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 138s Selecting previously unselected package libpixman-1-0:arm64. 138s Preparing to unpack .../29-libpixman-1-0_0.42.2-1build1_arm64.deb ... 138s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 138s Selecting previously unselected package libxcb-render0:arm64. 138s Preparing to unpack .../30-libxcb-render0_1.17.0-2_arm64.deb ... 138s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 138s Selecting previously unselected package libxcb-shm0:arm64. 138s Preparing to unpack .../31-libxcb-shm0_1.17.0-2_arm64.deb ... 138s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 138s Selecting previously unselected package libxrender1:arm64. 139s Preparing to unpack .../32-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 139s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 139s Selecting previously unselected package libcairo2:arm64. 139s Preparing to unpack .../33-libcairo2_1.18.0-3build1_arm64.deb ... 139s Unpacking libcairo2:arm64 (1.18.0-3build1) ... 139s Selecting previously unselected package libltdl7:arm64. 139s Preparing to unpack .../34-libltdl7_2.4.7-7build1_arm64.deb ... 139s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 139s Selecting previously unselected package fontconfig. 139s Preparing to unpack .../35-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 139s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 139s Selecting previously unselected package libthai-data. 139s Preparing to unpack .../36-libthai-data_0.1.29-2build1_all.deb ... 139s Unpacking libthai-data (0.1.29-2build1) ... 139s Selecting previously unselected package libdatrie1:arm64. 139s Preparing to unpack .../37-libdatrie1_0.2.13-3build1_arm64.deb ... 139s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 139s Selecting previously unselected package libthai0:arm64. 140s Preparing to unpack .../38-libthai0_0.1.29-2build1_arm64.deb ... 140s Unpacking libthai0:arm64 (0.1.29-2build1) ... 140s Selecting previously unselected package libpango-1.0-0:arm64. 140s Preparing to unpack .../39-libpango-1.0-0_1.54.0+ds-1_arm64.deb ... 140s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-1) ... 140s Selecting previously unselected package libpangoft2-1.0-0:arm64. 140s Preparing to unpack .../40-libpangoft2-1.0-0_1.54.0+ds-1_arm64.deb ... 140s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 140s Selecting previously unselected package libpangocairo-1.0-0:arm64. 140s Preparing to unpack .../41-libpangocairo-1.0-0_1.54.0+ds-1_arm64.deb ... 140s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 140s Selecting previously unselected package libpathplan4:arm64. 140s Preparing to unpack .../42-libpathplan4_2.42.4-1_arm64.deb ... 140s Unpacking libpathplan4:arm64 (2.42.4-1) ... 140s Selecting previously unselected package libgvc6. 140s Preparing to unpack .../43-libgvc6_2.42.4-1_arm64.deb ... 140s Unpacking libgvc6 (2.42.4-1) ... 140s Selecting previously unselected package libgvpr2:arm64. 140s Preparing to unpack .../44-libgvpr2_2.42.4-1_arm64.deb ... 140s Unpacking libgvpr2:arm64 (2.42.4-1) ... 140s Selecting previously unselected package liblab-gamut1:arm64. 141s Preparing to unpack .../45-liblab-gamut1_2.42.4-1_arm64.deb ... 141s Unpacking liblab-gamut1:arm64 (2.42.4-1) ... 141s Selecting previously unselected package x11-common. 141s Preparing to unpack .../46-x11-common_1%3a7.7+23ubuntu3_all.deb ... 141s Unpacking x11-common (1:7.7+23ubuntu3) ... 141s Selecting previously unselected package libice6:arm64. 141s Preparing to unpack .../47-libice6_2%3a1.0.10-1build3_arm64.deb ... 141s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 141s Selecting previously unselected package libsm6:arm64. 141s Preparing to unpack .../48-libsm6_2%3a1.2.3-1build3_arm64.deb ... 141s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 141s Selecting previously unselected package libxt6t64:arm64. 142s Preparing to unpack .../49-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 142s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 142s Selecting previously unselected package libxmu6:arm64. 142s Preparing to unpack .../50-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 142s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 142s Selecting previously unselected package libxaw7:arm64. 142s Preparing to unpack .../51-libxaw7_2%3a1.0.14-1build2_arm64.deb ... 142s Unpacking libxaw7:arm64 (2:1.0.14-1build2) ... 142s Selecting previously unselected package graphviz. 143s Preparing to unpack .../52-graphviz_2.42.4-1_arm64.deb ... 143s Unpacking graphviz (2.42.4-1) ... 143s Selecting previously unselected package python3-pydot. 143s Preparing to unpack .../53-python3-pydot_2.0.0-3_all.deb ... 143s Unpacking python3-pydot (2.0.0-3) ... 143s Selecting previously unselected package python3-shellescape. 143s Preparing to unpack .../54-python3-shellescape_3.4.1-5_all.deb ... 143s Unpacking python3-shellescape (3.4.1-5) ... 143s Selecting previously unselected package python3-spython. 143s Preparing to unpack .../55-python3-spython_0.3.13-2_all.deb ... 143s Unpacking python3-spython (0.3.13-2) ... 143s Selecting previously unselected package python3-arcp. 143s Preparing to unpack .../56-python3-arcp_0.2.1-6_all.deb ... 143s Unpacking python3-arcp (0.2.1-6) ... 144s Selecting previously unselected package cwltool. 144s Preparing to unpack .../57-cwltool_3.1.20240508115724-1_all.deb ... 144s Unpacking cwltool (3.1.20240508115724-1) ... 144s Selecting previously unselected package libcares2:arm64. 144s Preparing to unpack .../58-libcares2_1.32.3-1_arm64.deb ... 144s Unpacking libcares2:arm64 (1.32.3-1) ... 144s Selecting previously unselected package node-xtend. 144s Preparing to unpack .../59-node-xtend_4.0.2-3_all.deb ... 144s Unpacking node-xtend (4.0.2-3) ... 144s Selecting previously unselected package nodejs. 144s Preparing to unpack .../60-nodejs_20.15.0+dfsg-1ubuntu3_arm64.deb ... 144s Unpacking nodejs (20.15.0+dfsg-1ubuntu3) ... 144s Selecting previously unselected package node-acorn. 144s Preparing to unpack .../61-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 144s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 144s Selecting previously unselected package node-cjs-module-lexer. 144s Preparing to unpack .../62-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 144s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 144s Selecting previously unselected package node-undici. 144s Preparing to unpack .../63-node-undici_5.28.4+dfsg1+~cs23.12.11-2_all.deb ... 144s Unpacking node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... 144s Selecting previously unselected package libnode115:arm64. 144s Preparing to unpack .../64-libnode115_20.15.0+dfsg-1ubuntu3_arm64.deb ... 144s Unpacking libnode115:arm64 (20.15.0+dfsg-1ubuntu3) ... 144s Selecting previously unselected package libyaml-cpp0.8:arm64. 145s Preparing to unpack .../65-libyaml-cpp0.8_0.8.0+dfsg-6build1_arm64.deb ... 145s Unpacking libyaml-cpp0.8:arm64 (0.8.0+dfsg-6build1) ... 145s Selecting previously unselected package seqan-raptor. 145s Preparing to unpack .../66-seqan-raptor_3.0.1+ds-5_arm64.deb ... 145s Unpacking seqan-raptor (3.0.1+ds-5) ... 145s Selecting previously unselected package seqan-raptor-doc. 145s Preparing to unpack .../67-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 145s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 145s Selecting previously unselected package autopkgtest-satdep. 145s Preparing to unpack .../68-1-autopkgtest-satdep.deb ... 145s Unpacking autopkgtest-satdep (0) ... 145s Setting up python3-arcp (0.2.1-6) ... 145s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ... 145s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 147s Regenerating fonts cache... done. 147s Setting up python3-filelock (3.15.4-1) ... 148s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 148s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 148s Setting up libxcb-render0:arm64 (1.17.0-2) ... 148s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 148s Setting up python3-mypy-extensions (1.0.0-1) ... 148s Setting up libyaml-cpp0.8:arm64 (0.8.0+dfsg-6build1) ... 148s Setting up liblab-gamut1:arm64 (2.42.4-1) ... 148s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8-1build1) ... 148s Setting up x11-common (1:7.7+23ubuntu3) ... 149s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 149s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 149s Setting up python3-networkx (3.2.1-4ubuntu1) ... 150s Setting up libcairo2:arm64 (1.18.0-3build1) ... 150s Setting up python3-psutil (5.9.8-2build2) ... 150s Setting up python3-six (1.16.0-6) ... 151s Setting up python3-isodate (0.6.1-2) ... 151s Setting up python3-packaging (24.1-1) ... 151s Setting up python3-humanfriendly (10.0-5) ... 152s Setting up python3-spython (0.3.13-2) ... 152s Setting up libpathplan4:arm64 (2.42.4-1) ... 152s Setting up libann0 (1.1.2+doc-9build1) ... 152s Setting up libcares2:arm64 (1.32.3-1) ... 152s Setting up libltdl7:arm64 (2.4.7-7build1) ... 152s Setting up python3-ruamel.yaml (0.17.21-1) ... 152s Setting up node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... 152s Setting up python3-rdflib (7.0.0-1) ... 153s Setting up libxslt1.1:arm64 (1.1.39-0exp1build1) ... 153s Setting up libthai-data (0.1.29-2build1) ... 153s Setting up python3-dateutil (2.9.0-2) ... 153s Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 153s Setting up python3-msgpack (1.0.3-3build2) ... 154s Setting up libcdt5:arm64 (2.42.4-1) ... 154s Setting up libcgraph6:arm64 (2.42.4-1) ... 154s Setting up python3-cachecontrol (0.14.0-1) ... 154s Setting up python3-shellescape (3.4.1-5) ... 154s Setting up node-xtend (4.0.2-3) ... 154s Setting up seqan-raptor (3.0.1+ds-5) ... 154s Setting up python3-argcomplete (3.4.0-2) ... 154s Setting up python3-coloredlogs (15.0.1-1) ... 154s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 154s Setting up python3-mistune (3.0.2-1) ... 155s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 155s Setting up libice6:arm64 (2:1.0.10-1build3) ... 155s Setting up python3-schema-salad (8.5.20240410123758-1) ... 155s Setting up libthai0:arm64 (0.1.29-2build1) ... 155s Setting up cwl-upgrader (1.2.11-1) ... 155s Setting up libgvpr2:arm64 (2.42.4-1) ... 155s Setting up python3-lxml:arm64 (5.2.2-1) ... 156s Setting up libsm6:arm64 (2:1.2.3-1build3) ... 156s Setting up libpango-1.0-0:arm64 (1.54.0+ds-1) ... 156s Setting up python3-cwl-utils (0.33-1) ... 157s Setting up python3-prov (2.0.1-1) ... 157s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 157s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-1) ... 157s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-1) ... 157s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 157s Setting up libxaw7:arm64 (2:1.0.14-1build2) ... 157s Setting up libgvc6 (2.42.4-1) ... 158s Setting up graphviz (2.42.4-1) ... 158s Setting up python3-pydot (2.0.0-3) ... 158s Setting up cwltool (3.1.20240508115724-1) ... 158s Setting up libnode115:arm64 (20.15.0+dfsg-1ubuntu3) ... 159s Setting up nodejs (20.15.0+dfsg-1ubuntu3) ... 159s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 159s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 159s Setting up autopkgtest-satdep (0) ... 159s Processing triggers for libc-bin (2.39-0ubuntu9) ... 159s Processing triggers for man-db (2.12.1-2) ... 165s (Reading database ... 86209 files and directories currently installed.) 165s Removing autopkgtest-satdep (0) ... 166s autopkgtest [14:45:45]: test cwl: [----------------------- 166s INFO /usr/bin/cwltool 3.1.20240508115724 166s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 169s INFO [job raptor-build.cwl] /tmp/autopkgtest.APcIdS/autopkgtest_tmp/z4jqzo0p$ raptor \ 169s build \ 169s --input \ 169s input_bins_filepaths.txt \ 169s --output \ 169s 0_bins_window_19.index 169s ============= Timings ============= 169s Wall clock time [s]: 0.01 169s Peak memory usage [MiB]: 62.9 169s Determine IBF size [s]: 0.00 169s Index allocation [s]: 0.00 169s User bin I/O avg per thread [s]: 0.00 169s User bin I/O sum [s]: 0.00 169s Fill IBF avg per thread [s]: 0.00 169s Fill IBF sum [s]: 0.00 169s Store index [s]: 0.00 169s INFO [job raptor-build.cwl] completed success 169s INFO Final process status is success 169s "checksum": "sha1$098169f476fb949b0d08f2d1e05881049819b811", 170s INFO /usr/bin/cwltool 3.1.20240508115724 170s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 171s INFO [job raptor-build.cwl] /tmp/autopkgtest.APcIdS/autopkgtest_tmp/qwjr4koh$ raptor \ 171s build \ 171s --input \ 171s input_bins_filepaths.txt \ 171s --output \ 171s 0_bins_window_19.index 171s ============= Timings ============= 171s Wall clock time [s]: 0.01 171s Peak memory usage [MiB]: 63.7 171s Determine IBF size [s]: 0.00 171s Index allocation [s]: 0.00 171s User bin I/O avg per thread [s]: 0.00 171s User bin I/O sum [s]: 0.00 171s Fill IBF avg per thread [s]: 0.00 171s Fill IBF sum [s]: 0.00 171s Store index [s]: 0.00 171s INFO [job raptor-build.cwl] completed success 171s INFO Final process status is success 171s "checksum": "sha1$64a4328eb3dab99bf6ecd38f84f4ae45fd01a4dd", 172s autopkgtest [14:45:51]: test cwl: -----------------------] 172s autopkgtest [14:45:51]: test cwl: - - - - - - - - - - results - - - - - - - - - - 172s cwl PASS 173s autopkgtest [14:45:52]: test run-unit-test: preparing testbed 265s autopkgtest [14:47:24]: testbed dpkg architecture: arm64 265s autopkgtest [14:47:24]: testbed apt version: 2.9.6 265s autopkgtest [14:47:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 268s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 268s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8552 B] 269s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [75.0 kB] 269s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [661 kB] 269s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [10.5 kB] 269s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 Packages [141 kB] 269s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 c-n-f Metadata [3740 B] 269s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 Packages [43.9 kB] 269s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted arm64 c-n-f Metadata [364 B] 269s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 Packages [695 kB] 269s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe arm64 c-n-f Metadata [17.7 kB] 269s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 Packages [11.9 kB] 269s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse arm64 c-n-f Metadata [552 B] 270s Fetched 1796 kB in 1s (1224 kB/s) 270s Reading package lists... 273s Reading package lists... 274s Building dependency tree... 274s Reading state information... 274s Calculating upgrade... 275s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 276s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 276s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 276s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 277s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 277s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 278s Reading package lists... 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 278s Calculating upgrade... 280s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 280s Reading package lists... 280s Building dependency tree... 280s Reading state information... 283s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 292s Starting pkgProblemResolver with broken count: 0 292s Starting 2 pkgProblemResolver with broken count: 0 292s Done 292s The following additional packages will be installed: 292s cmake cmake-data cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 292s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 292s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu googletest libasan8 292s libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgtest-dev libhwasan0 292s libisl23 libitm1 libjsoncpp25 liblsan0 libmpc3 libpkgconf3 librhash0 292s libseqan3-dev libsimde-dev libstdc++-14-dev libtsan2 libubsan1 libxxhash-dev 292s libyaml-cpp-dev libyaml-cpp0.8 pkg-config pkgconf pkgconf-bin rapidjson-dev 292s seqan-raptor seqan-raptor-doc zlib1g-dev 292s Suggested packages: 293s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-14-locales 293s cpp-14-doc gcc-14-doc gcc-multilib manpages-dev autoconf automake libtool 293s flex bison gdb gcc-doc gdb-aarch64-linux-gnu libstdc++-14-doc rapidjson-doc 293s cwl-runner 293s Recommended packages: 293s bzip2-doc 293s The following NEW packages will be installed: 293s autopkgtest-satdep cmake cmake-data cpp cpp-14 cpp-14-aarch64-linux-gnu 293s cpp-aarch64-linux-gnu g++ g++-14 g++-14-aarch64-linux-gnu 293s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 293s gcc-aarch64-linux-gnu googletest libasan8 libbz2-dev libcc1-0 libcereal-dev 293s libgcc-14-dev libgtest-dev libhwasan0 libisl23 libitm1 libjsoncpp25 liblsan0 293s libmpc3 libpkgconf3 librhash0 libseqan3-dev libsimde-dev libstdc++-14-dev 293s libtsan2 libubsan1 libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 pkg-config 293s pkgconf pkgconf-bin rapidjson-dev seqan-raptor seqan-raptor-doc zlib1g-dev 293s 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. 293s Need to get 78.6 MB/78.6 MB of archives. 293s After this operation, 288 MB of additional disk space will be used. 293s Get:1 /tmp/autopkgtest.APcIdS/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 293s Get:2 http://ftpmaster.internal/ubuntu oracular/main arm64 libjsoncpp25 arm64 1.9.5-6build1 [78.2 kB] 293s Get:3 http://ftpmaster.internal/ubuntu oracular/main arm64 librhash0 arm64 1.4.3-3build1 [126 kB] 294s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 cmake-data all 3.30.2-1 [2292 kB] 294s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main arm64 cmake arm64 3.30.2-1 [10.9 MB] 294s Get:6 http://ftpmaster.internal/ubuntu oracular/main arm64 libisl23 arm64 0.26-3build1 [669 kB] 294s Get:7 http://ftpmaster.internal/ubuntu oracular/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB] 294s Get:8 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [10.6 MB] 295s Get:9 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-14 arm64 14.1.0-5ubuntu1 [1030 B] 295s Get:10 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 295s Get:11 http://ftpmaster.internal/ubuntu oracular/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 295s Get:12 http://ftpmaster.internal/ubuntu oracular/main arm64 libcc1-0 arm64 14.1.0-5ubuntu1 [49.6 kB] 295s Get:13 http://ftpmaster.internal/ubuntu oracular/main arm64 libitm1 arm64 14.1.0-5ubuntu1 [27.9 kB] 295s Get:14 http://ftpmaster.internal/ubuntu oracular/main arm64 libasan8 arm64 14.1.0-5ubuntu1 [2894 kB] 295s Get:15 http://ftpmaster.internal/ubuntu oracular/main arm64 liblsan0 arm64 14.1.0-5ubuntu1 [1283 kB] 295s Get:16 http://ftpmaster.internal/ubuntu oracular/main arm64 libtsan2 arm64 14.1.0-5ubuntu1 [2685 kB] 295s Get:17 http://ftpmaster.internal/ubuntu oracular/main arm64 libubsan1 arm64 14.1.0-5ubuntu1 [1152 kB] 295s Get:18 http://ftpmaster.internal/ubuntu oracular/main arm64 libhwasan0 arm64 14.1.0-5ubuntu1 [1598 kB] 295s Get:19 http://ftpmaster.internal/ubuntu oracular/main arm64 libgcc-14-dev arm64 14.1.0-5ubuntu1 [2596 kB] 295s Get:20 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [20.9 MB] 296s Get:21 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-14 arm64 14.1.0-5ubuntu1 [506 kB] 296s Get:22 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 296s Get:23 http://ftpmaster.internal/ubuntu oracular/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 296s Get:24 http://ftpmaster.internal/ubuntu oracular/main arm64 libstdc++-14-dev arm64 14.1.0-5ubuntu1 [2468 kB] 296s Get:25 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-14-aarch64-linux-gnu arm64 14.1.0-5ubuntu1 [12.1 MB] 296s Get:26 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-14 arm64 14.1.0-5ubuntu1 [18.0 kB] 296s Get:27 http://ftpmaster.internal/ubuntu oracular/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 296s Get:28 http://ftpmaster.internal/ubuntu oracular/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 296s Get:29 http://ftpmaster.internal/ubuntu oracular/universe arm64 googletest all 1.15.0-1 [523 kB] 296s Get:30 http://ftpmaster.internal/ubuntu oracular/main arm64 libbz2-dev arm64 1.0.8-5.1 [35.8 kB] 296s Get:31 http://ftpmaster.internal/ubuntu oracular/universe arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [96.9 kB] 296s Get:32 http://ftpmaster.internal/ubuntu oracular/universe arm64 libcereal-dev arm64 1.3.2+dfsg-5 [222 kB] 296s Get:33 http://ftpmaster.internal/ubuntu oracular/universe arm64 libgtest-dev arm64 1.15.0-1 [272 kB] 296s Get:34 http://ftpmaster.internal/ubuntu oracular/main arm64 libpkgconf3 arm64 1.8.1-3 [31.2 kB] 296s Get:35 http://ftpmaster.internal/ubuntu oracular/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 296s Get:36 http://ftpmaster.internal/ubuntu oracular/universe arm64 libseqan3-dev all 3.3.0+ds-1 [748 kB] 296s Get:37 http://ftpmaster.internal/ubuntu oracular/universe arm64 libsimde-dev all 0.8.2-1 [466 kB] 296s Get:38 http://ftpmaster.internal/ubuntu oracular/main arm64 libxxhash-dev arm64 0.8.2-2build1 [80.6 kB] 296s Get:39 http://ftpmaster.internal/ubuntu oracular/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-6build1 [112 kB] 296s Get:40 http://ftpmaster.internal/ubuntu oracular/main arm64 libyaml-cpp-dev arm64 0.8.0+dfsg-6build1 [189 kB] 296s Get:41 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf-bin arm64 1.8.1-3 [20.7 kB] 296s Get:42 http://ftpmaster.internal/ubuntu oracular/main arm64 pkgconf arm64 1.8.1-3 [16.7 kB] 296s Get:43 http://ftpmaster.internal/ubuntu oracular/main arm64 pkg-config arm64 1.8.1-3 [7266 B] 296s Get:44 http://ftpmaster.internal/ubuntu oracular/universe arm64 seqan-raptor arm64 3.0.1+ds-5 [648 kB] 296s Get:45 http://ftpmaster.internal/ubuntu oracular/universe arm64 seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 297s Fetched 78.6 MB in 3s (22.8 MB/s) 297s Selecting previously unselected package libjsoncpp25:arm64. 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78315 files and directories currently installed.) 298s Preparing to unpack .../00-libjsoncpp25_1.9.5-6build1_arm64.deb ... 298s Unpacking libjsoncpp25:arm64 (1.9.5-6build1) ... 298s Selecting previously unselected package librhash0:arm64. 298s Preparing to unpack .../01-librhash0_1.4.3-3build1_arm64.deb ... 298s Unpacking librhash0:arm64 (1.4.3-3build1) ... 298s Selecting previously unselected package cmake-data. 298s Preparing to unpack .../02-cmake-data_3.30.2-1_all.deb ... 298s Unpacking cmake-data (3.30.2-1) ... 299s Selecting previously unselected package cmake. 299s Preparing to unpack .../03-cmake_3.30.2-1_arm64.deb ... 299s Unpacking cmake (3.30.2-1) ... 299s Selecting previously unselected package libisl23:arm64. 299s Preparing to unpack .../04-libisl23_0.26-3build1_arm64.deb ... 299s Unpacking libisl23:arm64 (0.26-3build1) ... 299s Selecting previously unselected package libmpc3:arm64. 299s Preparing to unpack .../05-libmpc3_1.3.1-1build1_arm64.deb ... 299s Unpacking libmpc3:arm64 (1.3.1-1build1) ... 299s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 299s Preparing to unpack .../06-cpp-14-aarch64-linux-gnu_14.1.0-5ubuntu1_arm64.deb ... 299s Unpacking cpp-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ... 299s Selecting previously unselected package cpp-14. 300s Preparing to unpack .../07-cpp-14_14.1.0-5ubuntu1_arm64.deb ... 300s Unpacking cpp-14 (14.1.0-5ubuntu1) ... 300s Selecting previously unselected package cpp-aarch64-linux-gnu. 300s Preparing to unpack .../08-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 300s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 300s Selecting previously unselected package cpp. 300s Preparing to unpack .../09-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 300s Unpacking cpp (4:14.1.0-2ubuntu1) ... 300s Selecting previously unselected package libcc1-0:arm64. 300s Preparing to unpack .../10-libcc1-0_14.1.0-5ubuntu1_arm64.deb ... 300s Unpacking libcc1-0:arm64 (14.1.0-5ubuntu1) ... 300s Selecting previously unselected package libitm1:arm64. 300s Preparing to unpack .../11-libitm1_14.1.0-5ubuntu1_arm64.deb ... 300s Unpacking libitm1:arm64 (14.1.0-5ubuntu1) ... 300s Selecting previously unselected package libasan8:arm64. 300s Preparing to unpack .../12-libasan8_14.1.0-5ubuntu1_arm64.deb ... 300s Unpacking libasan8:arm64 (14.1.0-5ubuntu1) ... 301s Selecting previously unselected package liblsan0:arm64. 301s Preparing to unpack .../13-liblsan0_14.1.0-5ubuntu1_arm64.deb ... 301s Unpacking liblsan0:arm64 (14.1.0-5ubuntu1) ... 301s Selecting previously unselected package libtsan2:arm64. 301s Preparing to unpack .../14-libtsan2_14.1.0-5ubuntu1_arm64.deb ... 301s Unpacking libtsan2:arm64 (14.1.0-5ubuntu1) ... 301s Selecting previously unselected package libubsan1:arm64. 301s Preparing to unpack .../15-libubsan1_14.1.0-5ubuntu1_arm64.deb ... 301s Unpacking libubsan1:arm64 (14.1.0-5ubuntu1) ... 301s Selecting previously unselected package libhwasan0:arm64. 301s Preparing to unpack .../16-libhwasan0_14.1.0-5ubuntu1_arm64.deb ... 301s Unpacking libhwasan0:arm64 (14.1.0-5ubuntu1) ... 301s Selecting previously unselected package libgcc-14-dev:arm64. 301s Preparing to unpack .../17-libgcc-14-dev_14.1.0-5ubuntu1_arm64.deb ... 302s Unpacking libgcc-14-dev:arm64 (14.1.0-5ubuntu1) ... 302s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 302s Preparing to unpack .../18-gcc-14-aarch64-linux-gnu_14.1.0-5ubuntu1_arm64.deb ... 302s Unpacking gcc-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ... 302s Selecting previously unselected package gcc-14. 303s Preparing to unpack .../19-gcc-14_14.1.0-5ubuntu1_arm64.deb ... 303s Unpacking gcc-14 (14.1.0-5ubuntu1) ... 303s Selecting previously unselected package gcc-aarch64-linux-gnu. 303s Preparing to unpack .../20-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 303s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 303s Selecting previously unselected package gcc. 303s Preparing to unpack .../21-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 303s Unpacking gcc (4:14.1.0-2ubuntu1) ... 303s Selecting previously unselected package libstdc++-14-dev:arm64. 303s Preparing to unpack .../22-libstdc++-14-dev_14.1.0-5ubuntu1_arm64.deb ... 303s Unpacking libstdc++-14-dev:arm64 (14.1.0-5ubuntu1) ... 304s Selecting previously unselected package g++-14-aarch64-linux-gnu. 304s Preparing to unpack .../23-g++-14-aarch64-linux-gnu_14.1.0-5ubuntu1_arm64.deb ... 304s Unpacking g++-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ... 304s Selecting previously unselected package g++-14. 305s Preparing to unpack .../24-g++-14_14.1.0-5ubuntu1_arm64.deb ... 305s Unpacking g++-14 (14.1.0-5ubuntu1) ... 305s Selecting previously unselected package g++-aarch64-linux-gnu. 305s Preparing to unpack .../25-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 305s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 305s Selecting previously unselected package g++. 305s Preparing to unpack .../26-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 305s Unpacking g++ (4:14.1.0-2ubuntu1) ... 305s Selecting previously unselected package googletest. 306s Preparing to unpack .../27-googletest_1.15.0-1_all.deb ... 306s Unpacking googletest (1.15.0-1) ... 306s Selecting previously unselected package libbz2-dev:arm64. 307s Preparing to unpack .../28-libbz2-dev_1.0.8-5.1_arm64.deb ... 307s Unpacking libbz2-dev:arm64 (1.0.8-5.1) ... 307s Selecting previously unselected package rapidjson-dev. 307s Preparing to unpack .../29-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... 307s Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... 307s Selecting previously unselected package libcereal-dev. 309s Preparing to unpack .../30-libcereal-dev_1.3.2+dfsg-5_arm64.deb ... 310s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 310s Selecting previously unselected package libgtest-dev:arm64. 310s Preparing to unpack .../31-libgtest-dev_1.15.0-1_arm64.deb ... 310s Unpacking libgtest-dev:arm64 (1.15.0-1) ... 311s Selecting previously unselected package libpkgconf3:arm64. 311s Preparing to unpack .../32-libpkgconf3_1.8.1-3_arm64.deb ... 311s Unpacking libpkgconf3:arm64 (1.8.1-3) ... 311s Selecting previously unselected package zlib1g-dev:arm64. 312s Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... 312s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 312s Selecting previously unselected package libseqan3-dev. 313s Preparing to unpack .../34-libseqan3-dev_3.3.0+ds-1_all.deb ... 313s Unpacking libseqan3-dev (3.3.0+ds-1) ... 313s Selecting previously unselected package libsimde-dev. 313s Preparing to unpack .../35-libsimde-dev_0.8.2-1_all.deb ... 313s Unpacking libsimde-dev (0.8.2-1) ... 314s Selecting previously unselected package libxxhash-dev:arm64. 314s Preparing to unpack .../36-libxxhash-dev_0.8.2-2build1_arm64.deb ... 314s Unpacking libxxhash-dev:arm64 (0.8.2-2build1) ... 314s Selecting previously unselected package libyaml-cpp0.8:arm64. 314s Preparing to unpack .../37-libyaml-cpp0.8_0.8.0+dfsg-6build1_arm64.deb ... 314s Unpacking libyaml-cpp0.8:arm64 (0.8.0+dfsg-6build1) ... 314s Selecting previously unselected package libyaml-cpp-dev:arm64. 314s Preparing to unpack .../38-libyaml-cpp-dev_0.8.0+dfsg-6build1_arm64.deb ... 314s Unpacking libyaml-cpp-dev:arm64 (0.8.0+dfsg-6build1) ... 314s Selecting previously unselected package pkgconf-bin. 314s Preparing to unpack .../39-pkgconf-bin_1.8.1-3_arm64.deb ... 314s Unpacking pkgconf-bin (1.8.1-3) ... 314s Selecting previously unselected package pkgconf:arm64. 314s Preparing to unpack .../40-pkgconf_1.8.1-3_arm64.deb ... 314s Unpacking pkgconf:arm64 (1.8.1-3) ... 315s Selecting previously unselected package pkg-config:arm64. 315s Preparing to unpack .../41-pkg-config_1.8.1-3_arm64.deb ... 315s Unpacking pkg-config:arm64 (1.8.1-3) ... 315s Selecting previously unselected package seqan-raptor. 315s Preparing to unpack .../42-seqan-raptor_3.0.1+ds-5_arm64.deb ... 315s Unpacking seqan-raptor (3.0.1+ds-5) ... 315s Selecting previously unselected package seqan-raptor-doc. 315s Preparing to unpack .../43-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 315s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 315s Selecting previously unselected package autopkgtest-satdep. 315s Preparing to unpack .../44-2-autopkgtest-satdep.deb ... 315s Unpacking autopkgtest-satdep (0) ... 315s Setting up libsimde-dev (0.8.2-1) ... 315s Setting up libyaml-cpp0.8:arm64 (0.8.0+dfsg-6build1) ... 315s Setting up libyaml-cpp-dev:arm64 (0.8.0+dfsg-6build1) ... 315s Setting up googletest (1.15.0-1) ... 315s Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... 315s Setting up libpkgconf3:arm64 (1.8.1-3) ... 315s Setting up libmpc3:arm64 (1.3.1-1build1) ... 315s Setting up libjsoncpp25:arm64 (1.9.5-6build1) ... 315s Setting up pkgconf-bin (1.8.1-3) ... 315s Setting up libxxhash-dev:arm64 (0.8.2-2build1) ... 315s Setting up libubsan1:arm64 (14.1.0-5ubuntu1) ... 315s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... 315s Setting up libhwasan0:arm64 (14.1.0-5ubuntu1) ... 315s Setting up librhash0:arm64 (1.4.3-3build1) ... 315s Setting up libasan8:arm64 (14.1.0-5ubuntu1) ... 315s Setting up cmake-data (3.30.2-1) ... 315s Setting up libtsan2:arm64 (14.1.0-5ubuntu1) ... 315s Setting up libisl23:arm64 (0.26-3build1) ... 315s Setting up seqan-raptor (3.0.1+ds-5) ... 315s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 315s Setting up libcc1-0:arm64 (14.1.0-5ubuntu1) ... 315s Setting up liblsan0:arm64 (14.1.0-5ubuntu1) ... 315s Setting up libitm1:arm64 (14.1.0-5ubuntu1) ... 315s Setting up libbz2-dev:arm64 (1.0.8-5.1) ... 315s Setting up libgtest-dev:arm64 (1.15.0-1) ... 315s Setting up libcereal-dev (1.3.2+dfsg-5) ... 315s Setting up pkgconf:arm64 (1.8.1-3) ... 315s Setting up pkg-config:arm64 (1.8.1-3) ... 315s Setting up cpp-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ... 315s Setting up cmake (3.30.2-1) ... 315s Setting up libgcc-14-dev:arm64 (14.1.0-5ubuntu1) ... 315s Setting up libstdc++-14-dev:arm64 (14.1.0-5ubuntu1) ... 315s Setting up libseqan3-dev (3.3.0+ds-1) ... 315s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 315s Setting up cpp-14 (14.1.0-5ubuntu1) ... 315s Setting up cpp (4:14.1.0-2ubuntu1) ... 315s Setting up gcc-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ... 315s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 315s Setting up g++-14-aarch64-linux-gnu (14.1.0-5ubuntu1) ... 315s Setting up gcc-14 (14.1.0-5ubuntu1) ... 315s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 315s Setting up g++-14 (14.1.0-5ubuntu1) ... 315s Setting up gcc (4:14.1.0-2ubuntu1) ... 315s Setting up g++ (4:14.1.0-2ubuntu1) ... 315s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 315s Setting up autopkgtest-satdep (0) ... 315s Processing triggers for man-db (2.12.1-2) ... 317s Processing triggers for libc-bin (2.39-0ubuntu9) ... 322s (Reading database ... 85364 files and directories currently installed.) 322s Removing autopkgtest-satdep (0) ... 326s autopkgtest [14:48:25]: test run-unit-test: [----------------------- 327s + pkg=seqan-raptor 327s + export LC_ALL=C.UTF-8 327s + LC_ALL=C.UTF-8 327s + '[' /tmp/autopkgtest.APcIdS/autopkgtest_tmp = '' ']' 327s + cp -r CHANGELOG.md CMakeLists.txt CODE_OF_CONDUCT.md INSTALL.md LICENSE.md README.md build_system debian doc include lib src test util workflow /tmp/autopkgtest.APcIdS/autopkgtest_tmp 327s + export 'CXXFLAGS=-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/' 327s + CXXFLAGS='-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/' 327s + cd /tmp/autopkgtest.APcIdS/autopkgtest_tmp 327s + patch -p1 327s patching file test/raptor-test.cmake 327s + cd /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit 327s + cmake -DRAPTOR_SUBMODULES_DIR=/tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/../../lib -DRAPTOR_NATIVE_BUILD=OFF . 328s -- The CXX compiler identification is GNU 14.1.0 329s -- The C compiler identification is GNU 14.1.0 329s -- Detecting CXX compiler ABI info 329s -- Detecting CXX compiler ABI info - done 329s -- Check for working CXX compiler: /usr/bin/c++ - skipped 329s -- Detecting CXX compile features 329s -- Detecting CXX compile features - done 329s -- Detecting C compiler ABI info 330s -- Detecting C compiler ABI info - done 330s -- Check for working C compiler: /usr/bin/cc - skipped 330s -- Detecting C compile features 330s -- Detecting C compile features - done 330s -- Finding RAPTOR and checking requirements: 330s -- RAPTOR include dir found: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include 330s -- Detected as running from a repository checkout… 330s -- …adding submodule include: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/include 330s -- …adding submodule include: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/robin-hood-hashing/src/include 330s -- …adding submodule include: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/sharg-parser/include 330s -- …adding submodule include: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/sharg-parser/test/include 330s -- …adding submodule include: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include 332s -- C++ Standard-20 support: via -std=c++20 335s -- OpenMP Support: via -fopenmp 335s -- SIMD-OpenMP Support: via -fopenmp-simd 336s -- Suppressing GCC 4 warnings: via -Wno-psabi 336s -- Optimize build: disabled 337s -- Link Time Optimization: enabled 337s -- Binary-stripping: via -s 337s -- Thread support: builtin 337s -- Optional dependency: ZLIB-1.3 found 337s -- Optional dependency: BZip2-1.0.8 found 337s -- Optional dependency: libexecinfo found 337s -- Found Raptor: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include 337s -- Finding program ccache 337s -- Finding program ccache - Failed 348s -- You can run `make` to build the application. 348s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 348s -- Checking for module 'libxxhash' 348s -- Found libxxhash, version 0.8.2 349s -- Test dependency: Google Test 1.15.0 found. 349s -- Configuring done (22.1s) 349s -- Generating done (0.1s) 349s -- Build files have been written to: /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit 349s + make 350s [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o 352s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 352s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 352s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 352s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 352s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/compute_bin_size.hpp:15, 352s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/upgrade/raptor_upgrade.cpp:13: 352s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 352s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 352s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375s [ 2%] Linking CXX static library ../../lib/libraptor_upgrade.a 375s [ 2%] Built target raptor_upgrade 375s [ 2%] Built target xxhash_project 375s [ 3%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o 378s In file included from /usr/include/seqan3/utility/container/aligned_allocator.hpp:19, 378s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:19, 378s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, 378s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/chopper_layout.cpp:9: 378s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 378s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 378s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378s In file included from /usr/include/simde/x86/mmx.h:30, 378s from /usr/include/simde/x86/sse.h:33, 378s from /usr/include/simde/x86/avx.h:28, 378s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21: 378s /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 378s 610 | # define SIMDE_POLY128_TYPE __int128 378s | ^~~~~~~~ 378s /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 378s 616 | typedef SIMDE_POLY128_TYPE simde_poly128; 378s | ^~~~~~~~~~~~~~~~~~ 388s [ 5%] Linking CXX static library ../../../lib/libchopper_layout_lib.a 388s [ 5%] Built target chopper_layout_lib 389s [ 6%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_line.cpp.o 390s [ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o 396s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 396s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 396s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 396s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 396s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/compute_bin_size.hpp:15, 396s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/argument_parsing/build_parsing.cpp:19: 396s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 396s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 396s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426s [ 8%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o 427s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 427s from /usr/include/seqan3/alphabet/exception.hpp:19, 427s from /usr/include/seqan3/alphabet/concept.hpp:17, 427s from /usr/include/seqan3/alphabet/nucleotide/concept.hpp:18, 427s from /usr/include/seqan3/alphabet/views/complement.hpp:17, 427s from /usr/include/seqan3/search/views/minimiser_hash.hpp:15, 427s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/argument_parsing/compute_bin_size.cpp:13: 427s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 427s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 427s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439s [ 10%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o 454s [ 11%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o 456s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 456s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 456s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 456s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 456s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/parse_bin_path.hpp:15, 456s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/argument_parsing/parse_bin_path.cpp:13: 456s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 456s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 456s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478s [ 12%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o 485s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 485s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 485s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 485s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 485s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/parse_bin_path.hpp:15, 485s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/argument_parsing/prepare_parsing.cpp:14: 485s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 485s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 485s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514s [ 13%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o 517s In file included from /usr/include/seqan3/core/detail/iterator_traits.hpp:18, 517s from /usr/include/seqan3/core/range/type_traits.hpp:19, 517s from /usr/include/seqan3/contrib/parallel/buffer_queue.hpp:29, 517s from /usr/include/seqan3/io/views/async_input_buffer.hpp:21, 517s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/argument_parsing/search_parsing.cpp:13: 517s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 517s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 517s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551s [ 15%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o 557s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 557s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 557s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 557s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 557s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/parse_bin_path.hpp:15, 557s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/argument_parsing/upgrade_parsing.cpp:14: 557s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 557s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 557s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583s [ 16%] Linking CXX static library ../../lib/libraptor_argument_parsing.a 583s [ 16%] Built target raptor_argument_parsing 584s [ 17%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o 586s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 586s from /usr/include/seqan3/alphabet/exception.hpp:19, 586s from /usr/include/seqan3/alphabet/concept.hpp:17, 586s from /usr/include/seqan3/alphabet/adaptation/char.hpp:28, 586s from /usr/include/seqan3/io/sequence_file/input.hpp:22, 586s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/prepare/compute_minimiser.cpp:15: 586s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 586s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 586s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596s [ 18%] Linking CXX static library ../../lib/libraptor_prepare.a 597s [ 18%] Built target raptor_prepare 597s [ 20%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o 599s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 599s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 599s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 599s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 599s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/bin_size_in_bits.hpp:15, 599s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/build_ibf.cpp:13: 599s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 599s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 599s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611s [ 21%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o 612s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 612s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 612s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 612s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 612s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/max_count_per_partition.hpp:18, 612s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/max_count_per_partition.cpp:16: 612s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 612s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 612s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625s [ 22%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o 626s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 626s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 626s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 626s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 626s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/build_ibf.hpp:15, 626s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/raptor_build.cpp:13: 626s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 626s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 626s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630s [ 24%] Linking CXX static library ../../lib/libraptor_build.a 630s [ 24%] Built target raptor_build 630s [ 25%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o 631s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 631s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 631s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 631s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 631s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/bin_size_in_bits.hpp:15, 631s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/bin_size_in_bits.cpp:15: 631s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 631s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 631s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634s [ 26%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o 635s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 635s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 635s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:13: 635s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 635s 20 | : public T, public std::iterator { 635s | ^~~~~~~~ 635s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 635s from /usr/include/c++/14/vector:62, 635s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 635s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 635s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 635s 127 | struct _GLIBCXX17_DEPRECATED iterator 635s | ^~~~~~~~ 638s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 638s from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:20, 638s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/chopper_build.hpp:15, 638s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:15: 638s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 638s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 638s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 638s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:16: 638s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 638s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 638s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 638s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 638s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 638s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 638s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 638s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 638s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643s [ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o 644s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 644s from /usr/include/seqan3/alphabet/exception.hpp:19, 644s from /usr/include/seqan3/alphabet/concept.hpp:17, 644s from /usr/include/seqan3/alphabet/nucleotide/concept.hpp:18, 644s from /usr/include/seqan3/alphabet/views/complement.hpp:17, 644s from /usr/include/seqan3/search/views/minimiser_hash.hpp:15, 644s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/compute_kmers.cpp:13: 644s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 644s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 644s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653s [ 29%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o 655s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 655s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 655s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:13: 655s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 655s 20 | : public T, public std::iterator { 655s | ^~~~~~~~ 655s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 655s from /usr/include/c++/14/vector:62, 655s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 655s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 655s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 655s 127 | struct _GLIBCXX17_DEPRECATED iterator 655s | ^~~~~~~~ 656s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 656s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 656s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 656s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 656s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/bin_size_in_bits.hpp:15, 656s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:15: 656s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 656s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 656s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 659s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:16: 659s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 659s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 659s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 659s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 659s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 659s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 659s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 659s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 659s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661s [ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o 663s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: 663s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 663s 20 | : public T, public std::iterator { 663s | ^~~~~~~~ 663s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 663s from /usr/include/c++/14/vector:62, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 663s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 663s 127 | struct _GLIBCXX17_DEPRECATED iterator 663s | ^~~~~~~~ 663s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 663s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 663s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:15, 663s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: 663s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 663s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 663s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16: 667s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 667s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 667s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 667s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 667s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 667s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 667s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 667s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 667s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670s [ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o 672s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:13: 672s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 672s 20 | : public T, public std::iterator { 672s | ^~~~~~~~ 672s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 672s from /usr/include/c++/14/vector:62, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 672s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 672s 127 | struct _GLIBCXX17_DEPRECATED iterator 672s | ^~~~~~~~ 672s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 672s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 672s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/compute_kmers.hpp:17, 672s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:15: 672s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 672s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 672s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 675s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:16: 675s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 675s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 675s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 675s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 675s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 675s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 675s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 675s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 675s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679s [ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o 679s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 679s from /usr/include/seqan3/alphabet/exception.hpp:19, 679s from /usr/include/seqan3/alphabet/concept.hpp:17, 679s from /usr/include/seqan3/alphabet/nucleotide/concept.hpp:18, 679s from /usr/include/seqan3/alphabet/views/complement.hpp:17, 679s from /usr/include/seqan3/search/views/minimiser_hash.hpp:15, 679s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/insert_into_ibf.cpp:13: 679s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 679s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 679s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692s [ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o 694s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 694s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 694s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:13: 694s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 694s 20 | : public T, public std::iterator { 694s | ^~~~~~~~ 694s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 694s from /usr/include/c++/14/vector:62, 694s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 694s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 694s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 694s 127 | struct _GLIBCXX17_DEPRECATED iterator 694s | ^~~~~~~~ 695s In file included from /usr/include/seqan3/core/detail/iterator_traits.hpp:18, 695s from /usr/include/seqan3/core/range/type_traits.hpp:19, 695s from /usr/include/seqan3/contrib/parallel/buffer_queue.hpp:29, 695s from /usr/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp:22, 695s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:15: 695s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 695s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 695s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/hierarchical_build.hpp:18, 699s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:17: 699s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 699s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 699s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 699s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 699s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 699s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 699s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 699s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 699s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703s [ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o 703s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 703s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 703s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:17: 703s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 703s 20 | : public T, public std::iterator { 703s | ^~~~~~~~ 703s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 703s from /usr/include/c++/14/algorithm:60, 703s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:13: 703s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 703s 127 | struct _GLIBCXX17_DEPRECATED iterator 703s | ^~~~~~~~ 705s [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o 707s [ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o 709s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 709s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 709s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:13: 709s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 709s 20 | : public T, public std::iterator { 709s | ^~~~~~~~ 709s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 709s from /usr/include/c++/14/vector:62, 709s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 709s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 709s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 709s 127 | struct _GLIBCXX17_DEPRECATED iterator 709s | ^~~~~~~~ 713s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 713s from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:20, 713s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/hierarchical_interleaved_bloom_filter.hpp:17, 713s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:19, 713s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, 713s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:17: 713s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 713s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 713s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 713s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 713s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 713s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 713s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 713s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 713s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 713s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 713s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718s [ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o 721s [ 40%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o 723s In file included from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 723s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 723s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:13: 723s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 723s 20 | : public T, public std::iterator { 723s | ^~~~~~~~ 723s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 723s from /usr/include/c++/14/vector:62, 723s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 723s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 723s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 723s 127 | struct _GLIBCXX17_DEPRECATED iterator 723s | ^~~~~~~~ 726s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 726s from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:20, 726s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/hierarchical_interleaved_bloom_filter.hpp:17, 726s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:19, 726s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/update_user_bins.hpp:15, 726s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:15: 726s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 726s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 726s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 726s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 726s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 726s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 726s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 726s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 726s /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 726s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 726s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729s [ 41%] Linking CXX static library ../../../lib/libraptor_build_hibf.a 730s [ 41%] Built target raptor_build_hibf 730s [ 43%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o 733s In file included from /usr/include/seqan3/utility/container/aligned_allocator.hpp:19, 733s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/include/chopper/sketch/hyperloglog.hpp:19, 733s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/include/chopper/sketch/toolbox.hpp:11, 733s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/include/chopper/data_store.hpp:8, 733s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/layout/raptor_layout.cpp:14: 733s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 733s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 733s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776s [ 44%] Linking CXX static library ../../lib/libraptor_layout.a 777s [ 44%] Built target raptor_layout 778s [ 45%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o 779s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 779s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 779s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 779s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/search_arguments.hpp:18, 779s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/search/search_hibf.hpp:15, 779s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/search/raptor_search.cpp:13: 779s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 779s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 779s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781s [ 46%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o 783s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 783s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 783s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 783s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/search_arguments.hpp:18, 783s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/search/search_hibf.hpp:15, 783s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/search/search_hibf.cpp:13: 783s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 783s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 783s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797s [ 48%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o 799s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 799s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 799s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 799s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/search_arguments.hpp:18, 799s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/search/search_ibf.hpp:15, 799s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/search/search_ibf.cpp:13: 799s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 799s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 799s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815s [ 49%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o 817s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 817s from /usr/include/seqan3/alphabet/exception.hpp:19, 817s from /usr/include/seqan3/alphabet/concept.hpp:17, 817s from /usr/include/seqan3/alphabet/nucleotide/concept.hpp:18, 817s from /usr/include/seqan3/alphabet/views/complement.hpp:17, 817s from /usr/include/seqan3/search/views/minimiser_hash.hpp:15, 817s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/search/search_partitioned_ibf.cpp:13: 817s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 817s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 817s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835s [ 50%] Linking CXX static library ../../lib/libraptor_search.a 835s [ 50%] Built target raptor_search 835s [ 51%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o 836s [ 53%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o 837s [ 54%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o 837s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 837s from /usr/include/seqan3/alphabet/exception.hpp:19, 837s from /usr/include/seqan3/alphabet/concept.hpp:17, 837s from /usr/include/seqan3/alphabet/alphabet_base.hpp:19, 837s from /usr/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15, 837s from /usr/include/seqan3/alphabet/nucleotide/dna4.hpp:17, 837s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/threshold/forward_strand_minimiser.hpp:17, 837s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/threshold/one_indirect_error_model.cpp:15: 837s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 837s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 837s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839s [ 55%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o 839s [ 56%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o 840s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 840s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 840s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 840s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/threshold/threshold_parameters.hpp:17, 840s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/threshold/precompute_correction.hpp:15, 840s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/threshold/precompute_correction.cpp:19: 840s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 840s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 840s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842s [ 58%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o 843s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 843s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 843s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 843s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/threshold/one_indirect_error_model.hpp:15, 843s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/src/threshold/precompute_threshold.cpp:20: 843s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 843s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 843s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845s [ 59%] Linking CXX static library ../../lib/libraptor_threshold.a 845s [ 59%] Built target raptor_threshold 845s [ 60%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o 871s [ 62%] Linking CXX executable ../bin/raptor 897s [ 62%] Built target raptor 897s [ 63%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o 905s In file included from /usr/include/seqan3/utility/char_operations/pretty_print.hpp:17, 905s from /usr/include/seqan3/alphabet/exception.hpp:19, 905s from /usr/include/seqan3/alphabet/concept.hpp:17, 905s from /usr/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp:15, 905s from /usr/include/seqan3/core/debug_stream.hpp:17, 905s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/chopper.cpp:3: 905s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 905s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 905s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907s In file included from /usr/include/simde/x86/mmx.h:30, 907s from /usr/include/simde/x86/sse.h:33, 907s from /usr/include/simde/x86/avx.h:28, 907s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, 907s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, 907s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/../include/chopper/data_store.hpp:8, 907s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/lib/chopper/src/chopper.cpp:6: 907s /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 907s 610 | # define SIMDE_POLY128_TYPE __int128 907s | ^~~~~~~~ 907s /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 907s 616 | typedef SIMDE_POLY128_TYPE simde_poly128; 907s | ^~~~~~~~~~~~~~~~~~ 965s [ 64%] Linking CXX executable ../../../bin/chopper 965s [ 64%] Built target chopper 966s [ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o 967s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 967s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 967s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 967s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/api/issue_142.cpp:10: 967s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 967s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 967s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 968s [ 67%] Linking CXX executable issue_142 969s [ 67%] Built target issue_142 969s [ 68%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o 970s [ 69%] Linking CXX executable memory_usage 972s [ 69%] Built target memory_usage 972s [ 70%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o 976s In file included from /usr/include/seqan3/core/concept/cereal.hpp:17, 976s from /usr/include/seqan3/utility/container/dynamic_bitset.hpp:17, 976s from /usr/include/seqan3/search/kmer_index/shape.hpp:16, 976s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/build_arguments.hpp:18, 976s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/include/raptor/argument_parsing/shared.hpp:17, 976s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/api/validate_shape.cpp:10: 976s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 976s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 976s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993s [ 72%] Linking CXX executable validate_shape 1000s [ 72%] Built target validate_shape 1001s [ 73%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o 1003s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1003s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1003s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1003s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1003s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1003s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/argument_parsing/options_test.cpp:10: 1003s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1003s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1003s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008s [ 74%] Linking CXX executable options_test 1010s [ 74%] Built target options_test 1010s [ 75%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o 1012s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1012s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1012s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1012s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1012s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1012s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/build/build_hibf_chopper_test.cpp:8: 1012s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1012s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1012s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1016s [ 77%] Linking CXX executable build_hibf_chopper_test 1018s [ 77%] Built target build_hibf_chopper_test 1018s [ 78%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o 1020s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1020s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1020s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1020s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1020s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1020s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/build/build_hibf_test.cpp:8: 1020s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1020s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1020s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028s [ 79%] Linking CXX executable build_hibf_test 1030s [ 79%] Built target build_hibf_test 1030s [ 81%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o 1032s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1032s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1032s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1032s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1032s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1032s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/build/build_ibf_compressed_test.cpp:8: 1032s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1032s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1032s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039s [ 82%] Linking CXX executable build_ibf_compressed_test 1042s [ 82%] Built target build_ibf_compressed_test 1042s [ 83%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o 1043s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1043s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1043s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1043s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1043s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1043s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/build/build_ibf_partitioned_test.cpp:8: 1043s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1043s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1043s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048s [ 84%] Linking CXX executable build_ibf_partitioned_test 1051s [ 84%] Built target build_ibf_partitioned_test 1051s [ 86%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o 1053s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1053s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1053s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1053s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1053s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1053s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/build/build_ibf_test.cpp:8: 1053s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1053s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1053s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059s [ 87%] Linking CXX executable build_ibf_test 1061s [ 87%] Built target build_ibf_test 1061s [ 88%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o 1063s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1063s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1063s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1063s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1063s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1063s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/search/search_hibf_test.cpp:8: 1063s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1063s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1063s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068s [ 89%] Linking CXX executable search_hibf_test 1071s [ 89%] Built target search_hibf_test 1071s [ 91%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o 1073s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1073s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1073s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1073s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1073s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1073s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/search/search_hibf_preprocessing_test.cpp:8: 1073s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1073s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1073s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079s [ 92%] Linking CXX executable search_hibf_preprocessing_test 1082s [ 92%] Built target search_hibf_preprocessing_test 1082s [ 93%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o 1084s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1084s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1084s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1084s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1084s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1084s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/search/search_ibf_preprocessing_test.cpp:8: 1084s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1084s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1084s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1091s [ 94%] Linking CXX executable search_ibf_preprocessing_test 1093s [ 94%] Built target search_ibf_preprocessing_test 1094s [ 96%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o 1095s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1095s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1095s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1095s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1095s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1095s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/search/search_ibf_test.cpp:8: 1095s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1095s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1095s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1100s [ 97%] Linking CXX executable search_ibf_test 1103s [ 97%] Built target search_ibf_test 1103s [ 98%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o 1104s In file included from /usr/include/seqan3/core/add_enum_bitwise_operators.hpp:17, 1104s from /usr/include/seqan3/core/debug_stream/debug_stream_type.hpp:17, 1104s from /usr/include/seqan3/core/debug_stream/detail/to_string.hpp:17, 1104s from /usr/include/seqan3/test/expect_range_eq.hpp:20, 1104s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/include/raptor/test/cli_test.hpp:12, 1104s from /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit/cli/upgrade/upgrade_test.cpp:8: 1104s /usr/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma message: Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’ 1104s 85 | "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-13). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC." 1104s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1111s [100%] Linking CXX executable upgrade_test 1113s [100%] Built target upgrade_test 1113s + find . -name raptor -delete 1113s + ctest . 1113s Test project /tmp/autopkgtest.APcIdS/autopkgtest_tmp/test/unit 1113s Start 1: api/issue_142 1113s 1/14 Test #1: api/issue_142 ............................... Passed 0.10 sec 1113s Start 2: api/memory_usage 1114s 2/14 Test #2: api/memory_usage ............................ Passed 0.15 sec 1114s Start 3: api/validate_shape 1114s 3/14 Test #3: api/validate_shape .......................... Passed 0.74 sec 1114s Start 4: cli/argument_parsing/options_test 1115s 4/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.67 sec 1115s Start 5: cli/build/build_hibf_chopper_test 1115s 5/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.20 sec 1115s Start 6: cli/build/build_hibf_test 1116s 6/14 Test #6: cli/build/build_hibf_test ................... Passed 0.43 sec 1116s Start 7: cli/build/build_ibf_compressed_test 1117s 7/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 0.85 sec 1117s Start 8: cli/build/build_ibf_partitioned_test 1118s 8/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 1.40 sec 1118s Start 9: cli/build/build_ibf_test 1118s 9/14 Test #9: cli/build/build_ibf_test .................... Passed 0.51 sec 1118s Start 10: cli/search/search_hibf_test 1119s 10/14 Test #10: cli/search/search_hibf_test ................. Passed 0.66 sec 1119s Start 11: cli/search/search_hibf_preprocessing_test 1121s 11/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 1.88 sec 1121s Start 12: cli/search/search_ibf_preprocessing_test 1123s 12/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 1.79 sec 1123s Start 13: cli/search/search_ibf_test 1123s 13/14 Test #13: cli/search/search_ibf_test .................. Passed 0.61 sec 1123s Start 14: cli/upgrade/upgrade_test 1124s 14/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.20 sec 1124s 1124s 100% tests passed, 0 tests failed out of 14 1124s 1124s Total Test time (real) = 10.21 sec 1124s + find . -name raptor 1124s autopkgtest [15:01:43]: test run-unit-test: -----------------------] 1125s autopkgtest [15:01:44]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1125s run-unit-test PASS 1125s autopkgtest [15:01:44]: @@@@@@@@@@@@@@@@@@@@ summary 1125s cwl PASS 1125s run-unit-test PASS 1137s nova [W] Skipping flock in bos03-arm64 1137s Creating nova instance adt-oracular-arm64-seqan-raptor-20240803-140437-juju-7f2275-prod-proposed-migration-environment-2-044e5ec3-7dea-4910-98f6-97d8b5ef0fad from image adt/ubuntu-oracular-arm64-server-20240803.img (UUID b97698b9-9221-4d91-b7aa-d6419b80e76e)... 1137s nova [W] Skipping flock in bos03-arm64 1137s Creating nova instance adt-oracular-arm64-seqan-raptor-20240803-140437-juju-7f2275-prod-proposed-migration-environment-2-044e5ec3-7dea-4910-98f6-97d8b5ef0fad from image adt/ubuntu-oracular-arm64-server-20240803.img (UUID b97698b9-9221-4d91-b7aa-d6419b80e76e)...