0s autopkgtest [02:10:45]: starting date and time: 2024-05-29 02:10:45+0000 0s autopkgtest [02:10:45]: git checkout: d60bd36 autopkgtest-build-lxd: Add missing remote prefix in get_boot_id(). 0s autopkgtest [02:10:45]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ugnx7qsh/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:netcdf --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=netcdf/1:4.9.2-6 -- lxd -r lxd-armhf-10.145.243.70 lxd-armhf-10.145.243.70:autopkgtest/ubuntu/oracular/armhf 55s autopkgtest [02:11:40]: testbed dpkg architecture: armhf 59s autopkgtest [02:11:44]: testbed apt version: 2.9.3 59s autopkgtest [02:11:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 71s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2568 B] 71s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 71s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [530 kB] 71s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [57.0 kB] 71s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [97.4 kB] 71s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [508 kB] 71s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1392 B] 71s Fetched 1272 kB in 2s (773 kB/s) 71s Reading package lists... 91s tee: /proc/self/fd/2: Permission denied 113s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 115s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s Calculating upgrade... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s autopkgtest [02:12:44]: rebooting testbed after setup commands that affected boot 166s autopkgtest [02:13:31]: testbed running kernel: Linux 6.5.0-35-generic #35~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue May 7 11:19:33 UTC 2 192s autopkgtest [02:13:57]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 233s Get:1 http://ftpmaster.internal/ubuntu oracular/universe lammps 20240207+dfsg-1.1build3 (dsc) [3286 B] 233s Get:2 http://ftpmaster.internal/ubuntu oracular/universe lammps 20240207+dfsg-1.1build3 (tar) [153 MB] 233s Get:3 http://ftpmaster.internal/ubuntu oracular/universe lammps 20240207+dfsg-1.1build3 (diff) [17.1 kB] 233s gpgv: Signature made Sun Mar 31 18:39:35 2024 UTC 233s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 233s gpgv: issuer "steve.langasek@ubuntu.com" 233s gpgv: Can't check signature: No public key 233s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1build3.dsc: no acceptable signature found 240s autopkgtest [02:14:45]: testing package lammps version 20240207+dfsg-1.1build3 242s autopkgtest [02:14:47]: build not needed 257s autopkgtest [02:15:02]: test crack: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 269s Starting pkgProblemResolver with broken count: 0 269s Starting 2 pkgProblemResolver with broken count: 0 269s Done 271s The following additional packages will be installed: 271s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 271s gcc-12-base gfortran-12 lammps lammps-data libaec0 libasan8 libatomic1 271s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 271s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 271s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 271s libfreetype6 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 271s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 271s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins 271s libhwloc15 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 271s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmpc3 libmunge2 271s libnetcdf19t64 libogg0 libopengl0 libopenmpi3t64 libpciaccess0 libpixman-1-0 271s libpmix2t64 libproj25 libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 271s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 271s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 271s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 271s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 271s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev 271s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 271s rpcsvc-proto x11-common 271s Suggested packages: 271s gcc-12-locales cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev 271s openkim-models glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 271s proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 271s | fortran-compiler 271s Recommended packages: 271s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 271s mesa-vulkan-drivers | vulkan-icd 272s The following NEW packages will be installed: 272s autopkgtest-satdep cpp-12 fontconfig-config fonts-dejavu-core 272s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 272s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 272s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 272s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7t64 libfabric1 272s libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 272s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 272s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 272s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins libhwloc15 libisl23 272s libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 liblammps0t64 272s liblapack3 liblerc4 libllvm17t64 libmpc3 libmunge2 libnetcdf19t64 libogg0 272s libopengl0 libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix2t64 libproj25 272s libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 272s libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 libubsan1 libvoro++1 272s libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 272s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 272s libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 272s libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev mpi-default-bin 272s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data rpcsvc-proto 272s x11-common 272s 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. 272s Need to get 135 MB/135 MB of archives. 272s After this operation, 466 MB of additional disk space will be used. 272s Get:1 /tmp/autopkgtest.NzFM76/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 273s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf gcc-12-base armhf 12.3.0-17ubuntu1 [46.3 kB] 273s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libisl23 armhf 0.26-3build1 [544 kB] 273s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB] 273s Get:5 http://ftpmaster.internal/ubuntu oracular/universe armhf cpp-12 armhf 12.3.0-17ubuntu1 [8159 kB] 274s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 274s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 274s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 274s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libcc1-0 armhf 14.1.0-1ubuntu1 [43.3 kB] 274s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB] 274s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf libatomic1 armhf 14.1.0-1ubuntu1 [7816 B] 274s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf libasan8 armhf 14.1.0-1ubuntu1 [2913 kB] 274s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libubsan1 armhf 14.1.0-1ubuntu1 [1154 kB] 274s Get:14 http://ftpmaster.internal/ubuntu oracular/universe armhf libgcc-12-dev armhf 12.3.0-17ubuntu1 [855 kB] 274s Get:15 http://ftpmaster.internal/ubuntu oracular/universe armhf gcc-12 armhf 12.3.0-17ubuntu1 [16.2 MB] 274s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 275s Get:17 http://ftpmaster.internal/ubuntu oracular/universe armhf libgfortran-12-dev armhf 12.3.0-17ubuntu1 [350 kB] 275s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf libc-dev-bin armhf 2.39-0ubuntu8.1 [19.1 kB] 275s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf linux-libc-dev armhf 6.8.0-31.31 [1557 kB] 275s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] 275s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 275s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libc6-dev armhf 2.39-0ubuntu8.1 [1351 kB] 275s Get:23 http://ftpmaster.internal/ubuntu oracular/universe armhf gfortran-12 armhf 12.3.0-17ubuntu1 [8571 kB] 275s Get:24 http://ftpmaster.internal/ubuntu oracular/universe armhf lammps-data all 20240207+dfsg-1.1build3 [9711 kB] 275s Get:25 http://ftpmaster.internal/ubuntu oracular/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 275s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 275s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB] 275s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 275s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB] 275s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 275s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 275s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 275s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo2 armhf 1.18.0-3build1 [482 kB] 275s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate0 armhf 1.20-1 [38.3 kB] 275s Get:35 http://ftpmaster.internal/ubuntu oracular/universe armhf libdouble-conversion3 armhf 3.3.0-1build1 [38.6 kB] 275s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-amdgpu1 armhf 2.4.120-2build1 [18.6 kB] 275s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-nouveau2 armhf 2.4.120-2build1 [15.2 kB] 275s Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-radeon1 armhf 2.4.120-2build1 [18.2 kB] 275s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-10 [7530 B] 275s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf librdmacm1t64 armhf 50.0-2build2 [63.0 kB] 275s Get:41 http://ftpmaster.internal/ubuntu oracular/universe armhf libfabric1 armhf 1.17.0-3build2 [419 kB] 275s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf libfftw3-double3 armhf 3.3.10-1ubuntu3 [369 kB] 275s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libvulkan1 armhf 1.3.280.0-1 [121 kB] 275s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libglapi-mesa armhf 24.0.8-1ubuntu1 [48.0 kB] 275s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libllvm17t64 armhf 1:17.0.6-12 [25.3 MB] 276s Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 276s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf libgl1-mesa-dri armhf 24.0.8-1ubuntu1 [7204 kB] 276s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 276s Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf libx11-xcb1 armhf 2:1.8.7-1build1 [7748 B] 276s Get:50 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B] 276s Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 276s Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 276s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 276s Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 276s Get:55 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 276s Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 276s Get:57 http://ftpmaster.internal/ubuntu oracular/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 276s Get:58 http://ftpmaster.internal/ubuntu oracular/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 276s Get:59 http://ftpmaster.internal/ubuntu oracular/main armhf libglx-mesa0 armhf 24.0.8-1ubuntu1 [132 kB] 276s Get:60 http://ftpmaster.internal/ubuntu oracular/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 276s Get:61 http://ftpmaster.internal/ubuntu oracular/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 276s Get:62 http://ftpmaster.internal/ubuntu oracular/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 276s Get:63 http://ftpmaster.internal/ubuntu oracular/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 276s Get:64 http://ftpmaster.internal/ubuntu oracular/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 276s Get:65 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu4 [1337 kB] 276s Get:66 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu4 [54.8 kB] 276s Get:67 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc15 armhf 2.10.0-1build1 [146 kB] 276s Get:68 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 276s Get:69 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 276s Get:70 http://ftpmaster.internal/ubuntu oracular/main armhf libjsoncpp25 armhf 1.9.5-6build1 [75.3 kB] 276s Get:71 http://ftpmaster.internal/ubuntu oracular/universe armhf libkim-api2 armhf 2.3.0-1 [536 kB] 276s Get:72 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 277s Get:73 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf libnetcdf19t64 armhf 1:4.9.2-6 [422 kB] 277s Get:74 http://ftpmaster.internal/ubuntu oracular/universe armhf libmunge2 armhf 0.5.15-4build1 [17.1 kB] 277s Get:75 http://ftpmaster.internal/ubuntu oracular/main armhf libpciaccess0 armhf 0.17-3build1 [16.3 kB] 277s Get:76 http://ftpmaster.internal/ubuntu oracular/main armhf libxnvctrl0 armhf 510.47.03-0ubuntu4 [11.6 kB] 277s Get:77 http://ftpmaster.internal/ubuntu oracular/universe armhf ocl-icd-libopencl1 armhf 2.3.2-1build1 [34.5 kB] 277s Get:78 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc-plugins armhf 2.10.0-1build1 [13.7 kB] 277s Get:79 http://ftpmaster.internal/ubuntu oracular/universe armhf libpmix2t64 armhf 5.0.1-4.1build1 [616 kB] 277s Get:80 http://ftpmaster.internal/ubuntu oracular/universe armhf libopenmpi3t64 armhf 4.1.6-7ubuntu2 [2041 kB] 277s Get:81 http://ftpmaster.internal/ubuntu oracular/main armhf libpython3.12t64 armhf 3.12.3-1 [2058 kB] 277s Get:82 http://ftpmaster.internal/ubuntu oracular/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 277s Get:83 http://ftpmaster.internal/ubuntu oracular/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 277s Get:84 http://ftpmaster.internal/ubuntu oracular/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 277s Get:85 http://ftpmaster.internal/ubuntu oracular/universe armhf proj-data all 9.4.0-1build2 [7885 kB] 277s Get:86 http://ftpmaster.internal/ubuntu oracular/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 277s Get:87 http://ftpmaster.internal/ubuntu oracular/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 277s Get:88 http://ftpmaster.internal/ubuntu oracular/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 277s Get:89 http://ftpmaster.internal/ubuntu oracular/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 277s Get:90 http://ftpmaster.internal/ubuntu oracular/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu2 [178 kB] 277s Get:91 http://ftpmaster.internal/ubuntu oracular/universe armhf libproj25 armhf 9.4.0-1build2 [1281 kB] 277s Get:92 http://ftpmaster.internal/ubuntu oracular/universe armhf libtbbmalloc2 armhf 2021.11.0-2ubuntu2 [52.3 kB] 277s Get:93 http://ftpmaster.internal/ubuntu oracular/universe armhf libtbbbind-2-5 armhf 2021.11.0-2ubuntu2 [14.6 kB] 277s Get:94 http://ftpmaster.internal/ubuntu oracular/universe armhf libtbb12 armhf 2021.11.0-2ubuntu2 [88.0 kB] 277s Get:95 http://ftpmaster.internal/ubuntu oracular/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB] 277s Get:96 http://ftpmaster.internal/ubuntu oracular/main armhf libtheora0 armhf 1.1.1+dfsg.1-16.1build3 [142 kB] 277s Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 277s Get:98 http://ftpmaster.internal/ubuntu oracular/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 277s Get:99 http://ftpmaster.internal/ubuntu oracular/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 277s Get:100 http://ftpmaster.internal/ubuntu oracular/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB] 277s Get:101 http://ftpmaster.internal/ubuntu oracular/universe armhf libvtk9.1t64 armhf 9.1.0+really9.1.0+dfsg2-8 [17.7 MB] 278s Get:102 http://ftpmaster.internal/ubuntu oracular/universe armhf liblammps0t64 armhf 20240207+dfsg-1.1build3 [6812 kB] 278s Get:103 http://ftpmaster.internal/ubuntu oracular/universe armhf openmpi-common all 4.1.6-7ubuntu2 [170 kB] 278s Get:104 http://ftpmaster.internal/ubuntu oracular/universe armhf openmpi-bin armhf 4.1.6-7ubuntu2 [83.2 kB] 278s Get:105 http://ftpmaster.internal/ubuntu oracular/universe armhf mpi-default-bin armhf 1.15build1 [2376 B] 278s Get:106 http://ftpmaster.internal/ubuntu oracular/universe armhf lammps armhf 20240207+dfsg-1.1build3 [14.8 kB] 281s Fetched 135 MB in 7s (20.1 MB/s) 281s Selecting previously unselected package gcc-12-base:armhf. 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58333 files and directories currently installed.) 282s Preparing to unpack .../000-gcc-12-base_12.3.0-17ubuntu1_armhf.deb ... 282s Unpacking gcc-12-base:armhf (12.3.0-17ubuntu1) ... 282s Selecting previously unselected package libisl23:armhf. 282s Preparing to unpack .../001-libisl23_0.26-3build1_armhf.deb ... 282s Unpacking libisl23:armhf (0.26-3build1) ... 282s Selecting previously unselected package libmpc3:armhf. 283s Preparing to unpack .../002-libmpc3_1.3.1-1build1_armhf.deb ... 283s Unpacking libmpc3:armhf (1.3.1-1build1) ... 283s Selecting previously unselected package cpp-12. 283s Preparing to unpack .../003-cpp-12_12.3.0-17ubuntu1_armhf.deb ... 283s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 283s Selecting previously unselected package fonts-dejavu-mono. 284s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 284s Unpacking fonts-dejavu-mono (2.37-8) ... 284s Selecting previously unselected package fonts-dejavu-core. 284s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 284s Unpacking fonts-dejavu-core (2.37-8) ... 284s Selecting previously unselected package fontconfig-config. 285s Preparing to unpack .../006-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 290s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 291s Selecting previously unselected package libcc1-0:armhf. 291s Preparing to unpack .../007-libcc1-0_14.1.0-1ubuntu1_armhf.deb ... 291s Unpacking libcc1-0:armhf (14.1.0-1ubuntu1) ... 291s Selecting previously unselected package libgomp1:armhf. 292s Preparing to unpack .../008-libgomp1_14.1.0-1ubuntu1_armhf.deb ... 292s Unpacking libgomp1:armhf (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libatomic1:armhf. 292s Preparing to unpack .../009-libatomic1_14.1.0-1ubuntu1_armhf.deb ... 292s Unpacking libatomic1:armhf (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libasan8:armhf. 293s Preparing to unpack .../010-libasan8_14.1.0-1ubuntu1_armhf.deb ... 293s Unpacking libasan8:armhf (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libubsan1:armhf. 294s Preparing to unpack .../011-libubsan1_14.1.0-1ubuntu1_armhf.deb ... 294s Unpacking libubsan1:armhf (14.1.0-1ubuntu1) ... 294s Selecting previously unselected package libgcc-12-dev:armhf. 295s Preparing to unpack .../012-libgcc-12-dev_12.3.0-17ubuntu1_armhf.deb ... 295s Unpacking libgcc-12-dev:armhf (12.3.0-17ubuntu1) ... 295s Selecting previously unselected package gcc-12. 296s Preparing to unpack .../013-gcc-12_12.3.0-17ubuntu1_armhf.deb ... 296s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 296s Selecting previously unselected package libgfortran5:armhf. 296s Preparing to unpack .../014-libgfortran5_14.1.0-1ubuntu1_armhf.deb ... 296s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 297s Selecting previously unselected package libgfortran-12-dev:armhf. 297s Preparing to unpack .../015-libgfortran-12-dev_12.3.0-17ubuntu1_armhf.deb ... 297s Unpacking libgfortran-12-dev:armhf (12.3.0-17ubuntu1) ... 297s Selecting previously unselected package libc-dev-bin. 298s Preparing to unpack .../016-libc-dev-bin_2.39-0ubuntu8.1_armhf.deb ... 298s Unpacking libc-dev-bin (2.39-0ubuntu8.1) ... 298s Selecting previously unselected package linux-libc-dev:armhf. 298s Preparing to unpack .../017-linux-libc-dev_6.8.0-31.31_armhf.deb ... 298s Unpacking linux-libc-dev:armhf (6.8.0-31.31) ... 299s Selecting previously unselected package libcrypt-dev:armhf. 299s Preparing to unpack .../018-libcrypt-dev_1%3a4.4.36-4build1_armhf.deb ... 299s Unpacking libcrypt-dev:armhf (1:4.4.36-4build1) ... 299s Selecting previously unselected package rpcsvc-proto. 299s Preparing to unpack .../019-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 299s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 299s Selecting previously unselected package libc6-dev:armhf. 299s Preparing to unpack .../020-libc6-dev_2.39-0ubuntu8.1_armhf.deb ... 299s Unpacking libc6-dev:armhf (2.39-0ubuntu8.1) ... 299s Selecting previously unselected package gfortran-12. 299s Preparing to unpack .../021-gfortran-12_12.3.0-17ubuntu1_armhf.deb ... 299s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 300s Selecting previously unselected package lammps-data. 300s Preparing to unpack .../022-lammps-data_20240207+dfsg-1.1build3_all.deb ... 300s Unpacking lammps-data (20240207+dfsg-1.1build3) ... 301s Selecting previously unselected package libaec0:armhf. 301s Preparing to unpack .../023-libaec0_1.1.3-1_armhf.deb ... 301s Unpacking libaec0:armhf (1.1.3-1) ... 301s Selecting previously unselected package libblas3:armhf. 301s Preparing to unpack .../024-libblas3_3.12.0-3build1_armhf.deb ... 301s Unpacking libblas3:armhf (3.12.0-3build1) ... 301s Selecting previously unselected package libfreetype6:armhf. 301s Preparing to unpack .../025-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ... 301s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ... 301s Selecting previously unselected package libfontconfig1:armhf. 301s Preparing to unpack .../026-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 301s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 302s Selecting previously unselected package libpixman-1-0:armhf. 302s Preparing to unpack .../027-libpixman-1-0_0.42.2-1build1_armhf.deb ... 302s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ... 302s Selecting previously unselected package libxcb-render0:armhf. 302s Preparing to unpack .../028-libxcb-render0_1.17.0-2_armhf.deb ... 302s Unpacking libxcb-render0:armhf (1.17.0-2) ... 302s Selecting previously unselected package libxcb-shm0:armhf. 302s Preparing to unpack .../029-libxcb-shm0_1.17.0-2_armhf.deb ... 302s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 302s Selecting previously unselected package libxrender1:armhf. 302s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 302s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 302s Selecting previously unselected package libcairo2:armhf. 303s Preparing to unpack .../031-libcairo2_1.18.0-3build1_armhf.deb ... 303s Unpacking libcairo2:armhf (1.18.0-3build1) ... 303s Selecting previously unselected package libdeflate0:armhf. 304s Preparing to unpack .../032-libdeflate0_1.20-1_armhf.deb ... 304s Unpacking libdeflate0:armhf (1.20-1) ... 304s Selecting previously unselected package libdouble-conversion3:armhf. 304s Preparing to unpack .../033-libdouble-conversion3_3.3.0-1build1_armhf.deb ... 304s Unpacking libdouble-conversion3:armhf (3.3.0-1build1) ... 304s Selecting previously unselected package libdrm-amdgpu1:armhf. 304s Preparing to unpack .../034-libdrm-amdgpu1_2.4.120-2build1_armhf.deb ... 304s Unpacking libdrm-amdgpu1:armhf (2.4.120-2build1) ... 305s Selecting previously unselected package libdrm-nouveau2:armhf. 305s Preparing to unpack .../035-libdrm-nouveau2_2.4.120-2build1_armhf.deb ... 305s Unpacking libdrm-nouveau2:armhf (2.4.120-2build1) ... 305s Selecting previously unselected package libdrm-radeon1:armhf. 305s Preparing to unpack .../036-libdrm-radeon1_2.4.120-2build1_armhf.deb ... 305s Unpacking libdrm-radeon1:armhf (2.4.120-2build1) ... 305s Selecting previously unselected package libevent-pthreads-2.1-7t64:armhf. 305s Preparing to unpack .../037-libevent-pthreads-2.1-7t64_2.1.12-stable-10_armhf.deb ... 305s Unpacking libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-10) ... 305s Selecting previously unselected package librdmacm1t64:armhf. 305s Preparing to unpack .../038-librdmacm1t64_50.0-2build2_armhf.deb ... 305s Unpacking librdmacm1t64:armhf (50.0-2build2) ... 305s Selecting previously unselected package libfabric1:armhf. 305s Preparing to unpack .../039-libfabric1_1.17.0-3build2_armhf.deb ... 305s Unpacking libfabric1:armhf (1.17.0-3build2) ... 305s Selecting previously unselected package libfftw3-double3:armhf. 305s Preparing to unpack .../040-libfftw3-double3_3.3.10-1ubuntu3_armhf.deb ... 305s Unpacking libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 305s Selecting previously unselected package libvulkan1:armhf. 305s Preparing to unpack .../041-libvulkan1_1.3.280.0-1_armhf.deb ... 305s Unpacking libvulkan1:armhf (1.3.280.0-1) ... 305s Selecting previously unselected package libglapi-mesa:armhf. 305s Preparing to unpack .../042-libglapi-mesa_24.0.8-1ubuntu1_armhf.deb ... 305s Unpacking libglapi-mesa:armhf (24.0.8-1ubuntu1) ... 305s Selecting previously unselected package libllvm17t64:armhf. 305s Preparing to unpack .../043-libllvm17t64_1%3a17.0.6-12_armhf.deb ... 305s Unpacking libllvm17t64:armhf (1:17.0.6-12) ... 307s Selecting previously unselected package libxcb-dri3-0:armhf. 307s Preparing to unpack .../044-libxcb-dri3-0_1.17.0-2_armhf.deb ... 307s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 307s Selecting previously unselected package libgl1-mesa-dri:armhf. 307s Preparing to unpack .../045-libgl1-mesa-dri_24.0.8-1ubuntu1_armhf.deb ... 307s Unpacking libgl1-mesa-dri:armhf (24.0.8-1ubuntu1) ... 307s Selecting previously unselected package libglvnd0:armhf. 307s Preparing to unpack .../046-libglvnd0_1.7.0-1build1_armhf.deb ... 307s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 307s Selecting previously unselected package libx11-xcb1:armhf. 308s Preparing to unpack .../047-libx11-xcb1_2%3a1.8.7-1build1_armhf.deb ... 308s Unpacking libx11-xcb1:armhf (2:1.8.7-1build1) ... 308s Selecting previously unselected package libxcb-dri2-0:armhf. 308s Preparing to unpack .../048-libxcb-dri2-0_1.17.0-2_armhf.deb ... 308s Unpacking libxcb-dri2-0:armhf (1.17.0-2) ... 308s Selecting previously unselected package libxcb-glx0:armhf. 308s Preparing to unpack .../049-libxcb-glx0_1.17.0-2_armhf.deb ... 308s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 308s Selecting previously unselected package libxcb-present0:armhf. 308s Preparing to unpack .../050-libxcb-present0_1.17.0-2_armhf.deb ... 308s Unpacking libxcb-present0:armhf (1.17.0-2) ... 308s Selecting previously unselected package libxcb-randr0:armhf. 308s Preparing to unpack .../051-libxcb-randr0_1.17.0-2_armhf.deb ... 308s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 308s Selecting previously unselected package libxcb-sync1:armhf. 308s Preparing to unpack .../052-libxcb-sync1_1.17.0-2_armhf.deb ... 308s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 308s Selecting previously unselected package libxcb-xfixes0:armhf. 309s Preparing to unpack .../053-libxcb-xfixes0_1.17.0-2_armhf.deb ... 309s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 309s Selecting previously unselected package libxfixes3:armhf. 309s Preparing to unpack .../054-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 309s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 309s Selecting previously unselected package libxshmfence1:armhf. 310s Preparing to unpack .../055-libxshmfence1_1.3-1build5_armhf.deb ... 310s Unpacking libxshmfence1:armhf (1.3-1build5) ... 310s Selecting previously unselected package libxxf86vm1:armhf. 310s Preparing to unpack .../056-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 310s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 310s Selecting previously unselected package libglx-mesa0:armhf. 310s Preparing to unpack .../057-libglx-mesa0_24.0.8-1ubuntu1_armhf.deb ... 310s Unpacking libglx-mesa0:armhf (24.0.8-1ubuntu1) ... 310s Selecting previously unselected package libglx0:armhf. 310s Preparing to unpack .../058-libglx0_1.7.0-1build1_armhf.deb ... 310s Unpacking libglx0:armhf (1.7.0-1build1) ... 310s Selecting previously unselected package libgl1:armhf. 311s Preparing to unpack .../059-libgl1_1.7.0-1build1_armhf.deb ... 311s Unpacking libgl1:armhf (1.7.0-1build1) ... 311s Selecting previously unselected package libgl2ps1.4. 311s Preparing to unpack .../060-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 311s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 311s Selecting previously unselected package libglew2.2:armhf. 311s Preparing to unpack .../061-libglew2.2_2.2.0-4build1_armhf.deb ... 311s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 311s Selecting previously unselected package libsz2:armhf. 311s Preparing to unpack .../062-libsz2_1.1.3-1_armhf.deb ... 311s Unpacking libsz2:armhf (1.1.3-1) ... 311s Selecting previously unselected package libhdf5-103-1t64:armhf. 311s Preparing to unpack .../063-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 311s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ... 311s Selecting previously unselected package libhdf5-hl-100t64:armhf. 311s Preparing to unpack .../064-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 311s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ... 311s Selecting previously unselected package libhwloc15:armhf. 312s Preparing to unpack .../065-libhwloc15_2.10.0-1build1_armhf.deb ... 312s Unpacking libhwloc15:armhf (2.10.0-1build1) ... 312s Selecting previously unselected package libjpeg-turbo8:armhf. 312s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 312s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 312s Selecting previously unselected package libjpeg8:armhf. 312s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_armhf.deb ... 312s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 312s Selecting previously unselected package libjsoncpp25:armhf. 312s Preparing to unpack .../068-libjsoncpp25_1.9.5-6build1_armhf.deb ... 312s Unpacking libjsoncpp25:armhf (1.9.5-6build1) ... 312s Selecting previously unselected package libkim-api2:armhf. 312s Preparing to unpack .../069-libkim-api2_2.3.0-1_armhf.deb ... 312s Unpacking libkim-api2:armhf (2.3.0-1) ... 312s Selecting previously unselected package liblapack3:armhf. 313s Preparing to unpack .../070-liblapack3_3.12.0-3build1_armhf.deb ... 313s Unpacking liblapack3:armhf (3.12.0-3build1) ... 313s Selecting previously unselected package libnetcdf19t64:armhf. 313s Preparing to unpack .../071-libnetcdf19t64_1%3a4.9.2-6_armhf.deb ... 313s Unpacking libnetcdf19t64:armhf (1:4.9.2-6) ... 313s Selecting previously unselected package libmunge2:armhf. 313s Preparing to unpack .../072-libmunge2_0.5.15-4build1_armhf.deb ... 313s Unpacking libmunge2:armhf (0.5.15-4build1) ... 313s Selecting previously unselected package libpciaccess0:armhf. 313s Preparing to unpack .../073-libpciaccess0_0.17-3build1_armhf.deb ... 313s Unpacking libpciaccess0:armhf (0.17-3build1) ... 313s Selecting previously unselected package libxnvctrl0:armhf. 313s Preparing to unpack .../074-libxnvctrl0_510.47.03-0ubuntu4_armhf.deb ... 313s Unpacking libxnvctrl0:armhf (510.47.03-0ubuntu4) ... 313s Selecting previously unselected package ocl-icd-libopencl1:armhf. 314s Preparing to unpack .../075-ocl-icd-libopencl1_2.3.2-1build1_armhf.deb ... 314s Unpacking ocl-icd-libopencl1:armhf (2.3.2-1build1) ... 314s Selecting previously unselected package libhwloc-plugins:armhf. 314s Preparing to unpack .../076-libhwloc-plugins_2.10.0-1build1_armhf.deb ... 314s Unpacking libhwloc-plugins:armhf (2.10.0-1build1) ... 314s Selecting previously unselected package libpmix2t64:armhf. 314s Preparing to unpack .../077-libpmix2t64_5.0.1-4.1build1_armhf.deb ... 314s Unpacking libpmix2t64:armhf (5.0.1-4.1build1) ... 314s Selecting previously unselected package libopenmpi3t64:armhf. 315s Preparing to unpack .../078-libopenmpi3t64_4.1.6-7ubuntu2_armhf.deb ... 315s Unpacking libopenmpi3t64:armhf (4.1.6-7ubuntu2) ... 315s Selecting previously unselected package libpython3.12t64:armhf. 315s Preparing to unpack .../079-libpython3.12t64_3.12.3-1_armhf.deb ... 315s Unpacking libpython3.12t64:armhf (3.12.3-1) ... 315s Selecting previously unselected package libvoro++1. 315s Preparing to unpack .../080-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 315s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 315s Selecting previously unselected package libogg0:armhf. 316s Preparing to unpack .../081-libogg0_1.3.5-3build1_armhf.deb ... 316s Unpacking libogg0:armhf (1.3.5-3build1) ... 316s Selecting previously unselected package libopengl0:armhf. 316s Preparing to unpack .../082-libopengl0_1.7.0-1build1_armhf.deb ... 316s Unpacking libopengl0:armhf (1.7.0-1build1) ... 316s Selecting previously unselected package proj-data. 316s Preparing to unpack .../083-proj-data_9.4.0-1build2_all.deb ... 316s Unpacking proj-data (9.4.0-1build2) ... 316s Selecting previously unselected package libjbig0:armhf. 317s Preparing to unpack .../084-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 317s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 317s Selecting previously unselected package liblerc4:armhf. 317s Preparing to unpack .../085-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 317s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 317s Selecting previously unselected package libsharpyuv0:armhf. 317s Preparing to unpack .../086-libsharpyuv0_1.4.0-0.1_armhf.deb ... 317s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 317s Selecting previously unselected package libwebp7:armhf. 317s Preparing to unpack .../087-libwebp7_1.4.0-0.1_armhf.deb ... 317s Unpacking libwebp7:armhf (1.4.0-0.1) ... 318s Selecting previously unselected package libtiff6:armhf. 318s Preparing to unpack .../088-libtiff6_4.5.1+git230720-4ubuntu2_armhf.deb ... 318s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... 318s Selecting previously unselected package libproj25:armhf. 318s Preparing to unpack .../089-libproj25_9.4.0-1build2_armhf.deb ... 318s Unpacking libproj25:armhf (9.4.0-1build2) ... 318s Selecting previously unselected package libtbbmalloc2:armhf. 318s Preparing to unpack .../090-libtbbmalloc2_2021.11.0-2ubuntu2_armhf.deb ... 318s Unpacking libtbbmalloc2:armhf (2021.11.0-2ubuntu2) ... 318s Selecting previously unselected package libtbbbind-2-5:armhf. 318s Preparing to unpack .../091-libtbbbind-2-5_2021.11.0-2ubuntu2_armhf.deb ... 318s Unpacking libtbbbind-2-5:armhf (2021.11.0-2ubuntu2) ... 318s Selecting previously unselected package libtbb12:armhf. 318s Preparing to unpack .../092-libtbb12_2021.11.0-2ubuntu2_armhf.deb ... 318s Unpacking libtbb12:armhf (2021.11.0-2ubuntu2) ... 318s Selecting previously unselected package libtcl8.6:armhf. 319s Preparing to unpack .../093-libtcl8.6_8.6.14+dfsg-1build1_armhf.deb ... 319s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 319s Selecting previously unselected package libtheora0:armhf. 319s Preparing to unpack .../094-libtheora0_1.1.1+dfsg.1-16.1build3_armhf.deb ... 319s Unpacking libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 319s Selecting previously unselected package libxft2:armhf. 319s Preparing to unpack .../095-libxft2_2.3.6-1build1_armhf.deb ... 319s Unpacking libxft2:armhf (2.3.6-1build1) ... 319s Selecting previously unselected package x11-common. 319s Preparing to unpack .../096-x11-common_1%3a7.7+23ubuntu3_all.deb ... 319s Unpacking x11-common (1:7.7+23ubuntu3) ... 319s Selecting previously unselected package libxss1:armhf. 319s Preparing to unpack .../097-libxss1_1%3a1.2.3-1build3_armhf.deb ... 319s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 319s Selecting previously unselected package libtk8.6:armhf. 319s Preparing to unpack .../098-libtk8.6_8.6.14-1build1_armhf.deb ... 319s Unpacking libtk8.6:armhf (8.6.14-1build1) ... 319s Selecting previously unselected package libvtk9.1t64:armhf. 319s Preparing to unpack .../099-libvtk9.1t64_9.1.0+really9.1.0+dfsg2-8_armhf.deb ... 319s Unpacking libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-8) ... 320s Selecting previously unselected package liblammps0t64:armhf. 320s Preparing to unpack .../100-liblammps0t64_20240207+dfsg-1.1build3_armhf.deb ... 320s Unpacking liblammps0t64:armhf (20240207+dfsg-1.1build3) ... 320s Selecting previously unselected package openmpi-common. 320s Preparing to unpack .../101-openmpi-common_4.1.6-7ubuntu2_all.deb ... 320s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 320s Selecting previously unselected package openmpi-bin. 320s Preparing to unpack .../102-openmpi-bin_4.1.6-7ubuntu2_armhf.deb ... 320s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 321s Selecting previously unselected package mpi-default-bin. 321s Preparing to unpack .../103-mpi-default-bin_1.15build1_armhf.deb ... 321s Unpacking mpi-default-bin (1.15build1) ... 321s Selecting previously unselected package lammps. 321s Preparing to unpack .../104-lammps_20240207+dfsg-1.1build3_armhf.deb ... 321s Unpacking lammps (20240207+dfsg-1.1build3) ... 321s Selecting previously unselected package autopkgtest-satdep. 321s Preparing to unpack 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(12.3.0-17ubuntu1) ... 323s Setting up libglew2.2:armhf (2.2.0-4build1) ... 323s Setting up libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 323s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 323s Setting up gfortran-12 (12.3.0-17ubuntu1) ... 323s Setting up libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-8) ... 323s Setting up libkim-api2:armhf (2.3.0-1) ... 323s Setting up liblammps0t64:armhf (20240207+dfsg-1.1build3) ... 323s Setting up lammps (20240207+dfsg-1.1build3) ... 323s Setting up autopkgtest-satdep (0) ... 323s Processing triggers for man-db (2.12.1-1) ... 324s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 345s (Reading database ... 62279 files and directories currently installed.) 345s Removing autopkgtest-satdep (0) ... 351s autopkgtest [02:16:36]: test crack: [----------------------- 355s LAMMPS (7 Feb 2024 - Update 1) 355s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 355s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 355s using 1 OpenMP thread(s) per MPI task 355s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 355s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 355s 2 by 1 by 1 MPI processor grid 355s Created 8141 atoms 355s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 355s create_atoms CPU = 0.001 seconds 355s 302 atoms in group lower 355s 302 atoms in group upper 355s 604 atoms in group boundary 355s 7537 atoms in group mobile 355s 841 atoms in group leftupper 355s 841 atoms in group leftlower 355s Setting atom values ... 355s 841 settings made for type 355s Setting atom values ... 355s 841 settings made for type 355s Setting atom values ... 355s 302 settings made for type 355s Setting atom values ... 355s 302 settings made for type 355s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 355s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 355s Neighbor list info ... 355s update: every = 1 steps, delay = 5 steps, check = yes 355s max neighbors/atom: 2000, page size: 100000 355s master list distance cutoff = 2.8 355s ghost atom cutoff = 2.8 355s binsize = 1.4, bins = 80 56 1 355s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 355s (1) pair lj/cut, perpetual 355s attributes: half, newton on 355s pair build: half/bin/atomonly/newton 355s stencil: half/bin/2d 355s bin: standard 355s Setting up Verlet run ... 355s Unit style : lj 355s Current step : 0 355s Time step : 0.003 355s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes 355s Step Temp E_pair E_mol TotEng Press Volume 355s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 355s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 356s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 356s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 356s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 356s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 356s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 356s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 356s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 356s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 357s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 357s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 357s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 357s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 357s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 357s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 358s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 358s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 358s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 358s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 358s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 358s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 358s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 359s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 359s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 359s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 359s Loop time of 3.59778 on 2 procs for 5000 steps with 8141 atoms 359s 359s Performance: 360221.859 tau/day, 1389.745 timesteps/s, 11.314 Matom-step/s 359s 99.1% CPU use with 2 MPI tasks x 1 OpenMP threads 359s 359s MPI task timing breakdown: 359s Section | min time | avg time | max time |%varavg| %total 359s --------------------------------------------------------------- 359s Pair | 2.5676 | 2.6538 | 2.7401 | 5.3 | 73.76 359s Neigh | 0.12466 | 0.12884 | 0.13303 | 1.2 | 3.58 359s Comm | 0.23571 | 0.32867 | 0.42162 | 16.2 | 9.14 359s Output | 0.081801 | 0.082432 | 0.083063 | 0.2 | 2.29 359s Modify | 0.2486 | 0.25503 | 0.26146 | 1.3 | 7.09 359s Other | | 0.149 | | | 4.14 359s 359s Nlocal: 4070.5 ave 4085 max 4056 min 359s Histogram: 1 0 0 0 0 0 0 0 0 1 359s Nghost: 207 ave 208 max 206 min 359s Histogram: 1 0 0 0 0 0 0 0 0 1 359s Neighs: 35700 ave 35927 max 35473 min 359s Histogram: 1 0 0 0 0 0 0 0 0 1 359s 359s Total # of neighbors = 71400 359s Ave neighs/atom = 8.7704213 359s Neighbor list builds = 106 359s Dangerous builds = 0 359s Total wall time: 0:00:03 361s LAMMPS (7 Feb 2024 - Update 1) 367s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 367s using 1 OpenMP thread(s) per MPI task 367s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 367s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 367s 1 by 1 by 1 MPI processor grid 367s Created 8141 atoms 367s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 367s create_atoms CPU = 0.003 seconds 367s 302 atoms in group lower 367s 302 atoms in group upper 367s 604 atoms in group boundary 367s 7537 atoms in group mobile 367s 841 atoms in group leftupper 367s 841 atoms in group leftlower 367s Setting atom values ... 367s 841 settings made for type 367s Setting atom values ... 367s 841 settings made for type 367s Setting atom values ... 367s 302 settings made for type 367s Setting atom values ... 367s 302 settings made for type 367s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 367s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 367s Neighbor list info ... 367s update: every = 1 steps, delay = 5 steps, check = yes 367s max neighbors/atom: 2000, page size: 100000 367s master list distance cutoff = 2.8 367s ghost atom cutoff = 2.8 367s binsize = 1.4, bins = 80 56 1 367s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 367s (1) pair lj/cut, perpetual 367s attributes: half, newton on 367s pair build: half/bin/atomonly/newton 367s stencil: half/bin/2d 367s bin: standard 367s Setting up Verlet run ... 367s Unit style : lj 367s Current step : 0 367s Time step : 0.003 367s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes 367s Step Temp E_pair E_mol TotEng Press Volume 367s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 367s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 367s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 367s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 367s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 367s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 367s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 367s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 367s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 367s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 367s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 367s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 367s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 367s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 367s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 367s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 367s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 367s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 367s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 367s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 367s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 367s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 367s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 369s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 369s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 369s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 369s Loop time of 6.77217 on 1 procs for 5000 steps with 8141 atoms 369s 369s Performance: 191371.319 tau/day, 738.315 timesteps/s, 6.011 Matom-step/s 369s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads 369s 369s MPI task timing breakdown: 369s Section | min time | avg time | max time |%varavg| %total 369s --------------------------------------------------------------- 369s Pair | 5.6168 | 5.6168 | 5.6168 | 0.0 | 82.94 369s Neigh | 0.23957 | 0.23957 | 0.23957 | 0.0 | 3.54 369s Comm | 0.026684 | 0.026684 | 0.026684 | 0.0 | 0.39 369s Output | 0.023567 | 0.023567 | 0.023567 | 0.0 | 0.35 369s Modify | 0.53276 | 0.53276 | 0.53276 | 0.0 | 7.87 369s Other | | 0.3328 | | | 4.91 369s 369s Nlocal: 8141 ave 8141 max 8141 min 369s Histogram: 1 0 0 0 0 0 0 0 0 0 369s Nghost: 0 ave 0 max 0 min 369s Histogram: 1 0 0 0 0 0 0 0 0 0 369s Neighs: 71389 ave 71389 max 71389 min 369s Histogram: 1 0 0 0 0 0 0 0 0 0 369s 369s Total # of neighbors = 71389 369s Ave neighs/atom = 8.7690701 369s Neighbor list builds = 100 369s Dangerous builds = 0 369s Total wall time: 0:00:06 369s run: OK 370s autopkgtest [02:16:55]: test crack: -----------------------] 374s autopkgtest [02:16:59]: test crack: - - - - - - - - - - results - - - - - - - - - - 374s crack PASS 381s autopkgtest [02:17:06]: test dipole: preparing testbed 394s Reading package lists... 394s Building dependency tree... 394s Reading state information... 394s Starting pkgProblemResolver with broken count: 0 394s Starting 2 pkgProblemResolver with broken count: 0 394s Done 396s The following NEW packages will be installed: 396s autopkgtest-satdep 396s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 396s Need to get 0 B/704 B of archives. 396s After this operation, 0 B of additional disk space will be used. 396s Get:1 /tmp/autopkgtest.NzFM76/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 400s Selecting previously unselected package autopkgtest-satdep. 400s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62279 files and directories currently installed.) 400s Preparing to unpack .../2-autopkgtest-satdep.deb ... 400s Unpacking autopkgtest-satdep (0) ... 400s Setting up autopkgtest-satdep (0) ... 412s (Reading database ... 62279 files and directories currently installed.) 412s Removing autopkgtest-satdep (0) ... 417s autopkgtest [02:17:42]: test dipole: [----------------------- 422s LAMMPS (7 Feb 2024 - Update 1) 422s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 422s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 422s using 1 OpenMP thread(s) per MPI task 422s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 422s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 422s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 422s 2 by 1 by 1 MPI processor grid 422s Created 200 atoms 422s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 422s create_atoms CPU = 0.007 seconds 422s Setting atom values ... 422s 200 settings made for mass 422s Setting atom values ... 422s 200 settings made for dipole/random 422s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 422s Neighbor list info ... 422s update: every = 1 steps, delay = 0 steps, check = yes 422s max neighbors/atom: 2000, page size: 100000 422s master list distance cutoff = 2.8 422s ghost atom cutoff = 2.8 422s binsize = 1.4, bins = 13 13 2 422s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 422s (1) pair lj/cut/dipole/cut, perpetual 422s attributes: half, newton on 422s pair build: half/bin/atomonly/newton 422s stencil: half/bin/2d 422s bin: standard 422s Setting up Verlet run ... 422s Unit style : lj 422s Current step : 0 422s Time step : 0.005 422s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes 422s Step Temp E_pair c_erot TotEng Press 422s 0 0 -2.0965715 0 -2.0965715 -2.4759659 422s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 423s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 423s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 423s 2000 0.44906427 -2.8037479 0.24422576 -2.356929 0.15010432 423s 2500 0.46058471 -2.8143585 0.25012657 -2.3560767 -0.38282545 423s 3000 0.47344306 -2.8070454 0.22839921 -2.3359696 0.0086809905 423s 3500 0.40527008 -2.7047531 0.20199859 -2.3015094 0.28576366 423s 4000 0.45532509 -2.7724376 0.22443356 -2.3193892 -0.026546855 423s 4500 0.43501879 -2.7267497 0.20510275 -2.293906 -0.063127027 423s 5000 0.42443514 -2.745851 0.24060818 -2.3235381 -0.025742709 423s 5500 0.3839334 -2.7073937 0.24270814 -2.32538 -0.07170774 423s 6000 0.42922278 -2.7478329 0.25153908 -2.3207562 -0.47398846 423s 6500 0.45362461 -2.7967795 0.2756071 -2.345423 0.064335127 423s 7000 0.426427 -2.7100719 0.21223279 -2.2857771 0.23817765 423s 7500 0.44329907 -2.7592192 0.25431233 -2.3181366 -0.48160925 423s 8000 0.45710982 -2.746352 0.23112717 -2.2915277 0.067805988 423s 8500 0.45706146 -2.7008059 0.20546196 -2.2460298 -0.11582213 423s 9000 0.46491089 -2.7354016 0.23514028 -2.2728153 -0.25398947 423s 9500 0.44183004 -2.6848933 0.22534954 -2.2452724 -0.047314023 423s 10000 0.42741048 -2.7131911 0.27211413 -2.2879177 0.12679961 423s Loop time of 0.600061 on 2 procs for 10000 steps with 200 atoms 423s 423s Performance: 7199268.818 tau/day, 16664.974 timesteps/s, 3.333 Matom-step/s 423s 97.5% CPU use with 2 MPI tasks x 1 OpenMP threads 423s 423s MPI task timing breakdown: 423s Section | min time | avg time | max time |%varavg| %total 423s --------------------------------------------------------------- 423s Pair | 0.33123 | 0.36061 | 0.39 | 4.9 | 60.10 423s Neigh | 0.015702 | 0.016607 | 0.017512 | 0.7 | 2.77 423s Comm | 0.12988 | 0.16004 | 0.1902 | 7.5 | 26.67 423s Output | 0.00043789 | 0.00077529 | 0.0011127 | 0.0 | 0.13 423s Modify | 0.0313 | 0.032593 | 0.033886 | 0.7 | 5.43 423s Other | | 0.02943 | | | 4.91 423s 423s Nlocal: 100 ave 106 max 94 min 423s Histogram: 1 0 0 0 0 0 0 0 0 1 423s Nghost: 118.5 ave 120 max 117 min 423s Histogram: 1 0 0 0 0 0 0 0 0 1 423s Neighs: 827.5 ave 911 max 744 min 423s Histogram: 1 0 0 0 0 0 0 0 0 1 423s 423s Total # of neighbors = 1655 423s Ave neighs/atom = 8.275 423s Neighbor list builds = 692 423s Dangerous builds = 0 423s Total wall time: 0:00:01 439s LAMMPS (7 Feb 2024 - Update 1) 441s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 441s using 1 OpenMP thread(s) per MPI task 441s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 441s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 441s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 441s 1 by 1 by 1 MPI processor grid 441s Created 200 atoms 441s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 441s create_atoms CPU = 0.000 seconds 441s Setting atom values ... 441s 200 settings made for mass 441s Setting atom values ... 441s 200 settings made for dipole/random 441s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 441s Neighbor list info ... 441s update: every = 1 steps, delay = 0 steps, check = yes 441s max neighbors/atom: 2000, page size: 100000 441s master list distance cutoff = 2.8 441s ghost atom cutoff = 2.8 441s binsize = 1.4, bins = 13 13 2 441s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 441s (1) pair lj/cut/dipole/cut, perpetual 441s attributes: half, newton on 441s pair build: half/bin/atomonly/newton 441s stencil: half/bin/2d 441s bin: standard 441s Setting up Verlet run ... 441s Unit style : lj 441s Current step : 0 441s Time step : 0.005 441s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes 441s Step Temp E_pair c_erot TotEng Press 441s 0 0 -2.0965715 0 -2.0965715 -2.4759659 441s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 441s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 441s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 441s 2000 0.44906527 -2.8037488 0.24422567 -2.3569289 0.15010101 441s 2500 0.46052127 -2.8142136 0.25010172 -2.355995 -0.38222495 441s 3000 0.48349143 -2.8019094 0.21892648 -2.3208354 -0.021940474 441s 3500 0.42818128 -2.7407155 0.22510159 -2.3146751 -0.01916692 441s 4000 0.43447865 -2.7251092 0.21179003 -2.292803 -0.054070562 441s 4500 0.49679675 -2.7760513 0.19789317 -2.2817386 -0.01374163 441s 5000 0.45369814 -2.7436186 0.22108827 -2.2921889 0.032452862 441s 5500 0.49381571 -2.8052843 0.24840557 -2.3139377 -0.011483656 441s 6000 0.47486262 -2.762914 0.230038 -2.2904257 0.35084172 441s 6500 0.47834729 -2.7628296 0.23242786 -2.286874 -0.084199114 441s 7000 0.4554671 -2.7485479 0.25152556 -2.2953581 -0.41657484 441s 7500 0.48688446 -2.7468396 0.22672266 -2.2623895 0.19798746 441s 8000 0.42093195 -2.6889197 0.24972685 -2.2700924 -0.048022487 441s 8500 0.44505913 -2.65779 0.18787506 -2.2149561 0.23409841 441s 9000 0.48102255 -2.7186808 0.22041232 -2.2400634 0.26761374 441s 9500 0.41955498 -2.688272 0.26237731 -2.2708148 0.1556688 441s 10000 0.47397757 -2.683164 0.2078595 -2.2115563 -0.21881739 441s Loop time of 0.966507 on 1 procs for 10000 steps with 200 atoms 441s 441s Performance: 4469702.721 tau/day, 10346.534 timesteps/s, 2.069 Matom-step/s 441s 91.5% CPU use with 1 MPI tasks x 1 OpenMP threads 441s 441s MPI task timing breakdown: 441s Section | min time | avg time | max time |%varavg| %total 441s --------------------------------------------------------------- 441s Pair | 0.80113 | 0.80113 | 0.80113 | 0.0 | 82.89 441s Neigh | 0.032567 | 0.032567 | 0.032567 | 0.0 | 3.37 441s Comm | 0.048359 | 0.048359 | 0.048359 | 0.0 | 5.00 441s Output | 0.00026892 | 0.00026892 | 0.00026892 | 0.0 | 0.03 441s Modify | 0.057164 | 0.057164 | 0.057164 | 0.0 | 5.91 441s Other | | 0.02702 | | | 2.80 441s 441s Nlocal: 200 ave 200 max 200 min 443s Histogram: 1 0 0 0 0 0 0 0 0 0 443s Nghost: 166 ave 166 max 166 min 443s Histogram: 1 0 0 0 0 0 0 0 0 0 443s Neighs: 1624 ave 1624 max 1624 min 443s Histogram: 1 0 0 0 0 0 0 0 0 0 443s 443s Total # of neighbors = 1624 443s Ave neighs/atom = 8.12 443s Neighbor list builds = 703 443s Dangerous builds = 0 443s Total wall time: 0:00:02 443s run: OK 447s autopkgtest [02:18:12]: test dipole: -----------------------] 451s autopkgtest [02:18:16]: test dipole: - - - - - - - - - - results - - - - - - - - - - 451s dipole PASS 455s autopkgtest [02:18:20]: test ellipse: preparing testbed 468s Reading package lists... 468s Building dependency tree... 468s Reading state information... 469s Starting pkgProblemResolver with broken count: 0 469s Starting 2 pkgProblemResolver with broken count: 0 469s Done 470s The following NEW packages will be installed: 470s autopkgtest-satdep 470s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 470s Need to get 0 B/708 B of archives. 470s After this operation, 0 B of additional disk space will be used. 470s Get:1 /tmp/autopkgtest.NzFM76/3-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [708 B] 471s Selecting previously unselected package autopkgtest-satdep. 471s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62279 files and directories currently installed.) 471s Preparing to unpack .../3-autopkgtest-satdep.deb ... 471s Unpacking autopkgtest-satdep (0) ... 471s Setting up autopkgtest-satdep (0) ... 483s (Reading database ... 62279 files and directories currently installed.) 483s Removing autopkgtest-satdep (0) ... 489s autopkgtest [02:18:54]: test ellipse: [----------------------- 492s LAMMPS (7 Feb 2024 - Update 1) 492s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 492s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 492s using 1 OpenMP thread(s) per MPI task 492s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 492s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 492s 2 by 1 by 1 MPI processor grid 492s Created 400 atoms 492s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 492s create_atoms CPU = 0.000 seconds 492s Setting atom values ... 492s 29 settings made for type/fraction 492s Setting atom values ... 492s 371 settings made for mass 492s Setting atom values ... 492s 29 settings made for mass 492s Setting atom values ... 492s 371 settings made for shape 492s Setting atom values ... 492s 29 settings made for shape 492s Setting atom values ... 492s 400 settings made for quat/random 492s 371 atoms in group spheroid 492s 492s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 492s 492s Your simulation uses code contributions which should be cited: 492s - pair gayberne command: doi:10.1063/1.3058435 492s The log file lists these citations in BibTeX format. 492s 492s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 492s 492s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 492s Neighbor list info ... 492s update: every = 1 steps, delay = 0 steps, check = yes 492s max neighbors/atom: 2000, page size: 100000 492s master list distance cutoff = 4.8 492s ghost atom cutoff = 4.8 492s binsize = 2.4, bins = 59 59 3 492s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 492s (1) pair gayberne, perpetual 492s attributes: half, newton on 492s pair build: half/bin/atomonly/newton 492s stencil: half/bin/2d 492s bin: standard 492s Setting up Verlet run ... 492s Unit style : lj 492s Current step : 0 492s Time step : 0.002 492s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 492s Step c_rot E_pair TotEng Press Volume 492s 0 2.3158404 0 2.394 0.04788 20000 492s 100 1.7101139 0 1.7678302 0.034413192 20548.286 492s 200 2.3115592 0 2.3895743 0.04649702 20556.796 492s 300 1.831333 0 1.8931405 0.041256922 18354.646 492s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 492s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 492s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 492s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 492s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 492s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 492s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 492s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 492s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 492s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 492s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 492s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 492s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 492s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 492s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 492s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 492s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 492s Loop time of 0.449448 on 2 procs for 2000 steps with 400 atoms 492s 492s Performance: 768944.004 tau/day, 4449.907 timesteps/s, 1.780 Matom-step/s 492s 91.7% CPU use with 2 MPI tasks x 1 OpenMP threads 492s 492s MPI task timing breakdown: 492s Section | min time | avg time | max time |%varavg| %total 492s --------------------------------------------------------------- 492s Pair | 0.19933 | 0.23288 | 0.26644 | 7.0 | 51.82 492s Neigh | 0.011236 | 0.011436 | 0.011636 | 0.2 | 2.54 492s Comm | 0.041923 | 0.075321 | 0.10872 | 12.2 | 16.76 492s Output | 0.016901 | 0.017213 | 0.017526 | 0.2 | 3.83 492s Modify | 0.096846 | 0.09829 | 0.099735 | 0.5 | 21.87 492s Other | | 0.0143 | | | 3.18 492s 492s Nlocal: 200 ave 211 max 189 min 492s Histogram: 1 0 0 0 0 0 0 0 0 1 492s Nghost: 215 ave 217 max 213 min 492s Histogram: 1 0 0 0 0 0 0 0 0 1 492s Neighs: 1561 ave 1651 max 1471 min 492s Histogram: 1 0 0 0 0 0 0 0 0 1 492s 492s Total # of neighbors = 3122 492s Ave neighs/atom = 7.805 492s Neighbor list builds = 346 492s Dangerous builds = 0 492s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 492s Setting up Verlet run ... 492s Unit style : lj 492s Current step : 2000 492s Time step : 0.002 492s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes 492s Step c_rot E_pair TotEng Press Volume 492s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 492s 2100 1.9040485 -3.6005672 -1.6802923 0.39862443 989.96894 492s 2200 1.8951971 -3.5921565 -1.6947175 1.0260215 989.96894 492s 2300 2.0029243 -3.7081933 -1.6838652 0.66970186 989.96894 492s 2400 2.027189 -3.7314224 -1.7100024 0.89700378 989.96894 492s 2500 2.0661215 -3.7753463 -1.702413 0.57671879 989.96894 492s 2600 2.0610733 -3.7707904 -1.7111988 0.90914683 989.96894 492s 2700 2.0505106 -3.7599067 -1.7337499 0.65660966 989.96894 492s 2800 2.1106444 -3.8219338 -1.7370714 0.55276913 989.96894 492s 2900 2.0347978 -3.7428385 -1.7135242 0.69752989 989.96894 492s 3000 2.0331089 -3.7397511 -1.7515341 0.052123917 989.96894 492s 3100 1.9983479 -3.7074978 -1.7158075 0.7551458 989.96894 492s 3200 2.1299896 -3.8449355 -1.7171591 1.055861 989.96894 492s 3300 2.079427 -3.7934717 -1.684941 1.1625179 989.96894 493s 3400 2.1499496 -3.8651326 -1.703348 0.58109397 989.96894 493s 3500 2.0901278 -3.8054829 -1.699465 1.0231781 989.96894 493s 3600 2.1041735 -3.8168043 -1.6893938 1.0813513 989.96894 493s 3700 2.0650932 -3.7777761 -1.7224926 1.3120953 989.96894 493s 3800 2.0166275 -3.7282861 -1.7416258 0.78824642 989.96894 493s 3900 2.0726099 -3.7842546 -1.7339991 0.92130013 989.96894 493s 4000 2.1298275 -3.8450909 -1.7237177 0.95785441 989.96894 493s Loop time of 0.451025 on 2 procs for 2000 steps with 400 atoms 493s 493s Performance: 766255.019 tau/day, 4434.346 timesteps/s, 1.774 Matom-step/s 493s 95.8% CPU use with 2 MPI tasks x 1 OpenMP threads 493s 493s MPI task timing breakdown: 493s Section | min time | avg time | max time |%varavg| %total 493s --------------------------------------------------------------- 493s Pair | 0.28322 | 0.30223 | 0.32123 | 3.5 | 67.01 493s Neigh | 0.0029279 | 0.0033732 | 0.0038184 | 0.8 | 0.75 493s Comm | 0.046443 | 0.066061 | 0.085679 | 7.6 | 14.65 493s Output | 0.019019 | 0.019336 | 0.019652 | 0.2 | 4.29 493s Modify | 0.039507 | 0.045088 | 0.050668 | 2.6 | 10.00 493s Other | | 0.01494 | | | 3.31 493s 493s Nlocal: 200 ave 228 max 172 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s Nghost: 209 ave 215 max 203 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s Neighs: 1639.5 ave 1963 max 1316 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s 493s Total # of neighbors = 3279 493s Ave neighs/atom = 8.1975 493s Neighbor list builds = 50 493s Dangerous builds = 0 493s Total wall time: 0:00:00 493s LAMMPS (7 Feb 2024 - Update 1) 494s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 494s using 1 OpenMP thread(s) per MPI task 494s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 494s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 494s 1 by 1 by 1 MPI processor grid 494s Created 400 atoms 494s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 494s create_atoms CPU = 0.000 seconds 494s Setting atom values ... 494s 29 settings made for type/fraction 494s Setting atom values ... 494s 371 settings made for mass 494s Setting atom values ... 494s 29 settings made for mass 494s Setting atom values ... 494s 371 settings made for shape 494s Setting atom values ... 494s 29 settings made for shape 494s Setting atom values ... 494s 400 settings made for quat/random 494s 371 atoms in group spheroid 494s 494s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 494s 494s Your simulation uses code contributions which should be cited: 494s - pair gayberne command: doi:10.1063/1.3058435 494s The log file lists these citations in BibTeX format. 494s 494s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 494s 494s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 494s Neighbor list info ... 494s update: every = 1 steps, delay = 0 steps, check = yes 494s max neighbors/atom: 2000, page size: 100000 494s master list distance cutoff = 4.8 494s ghost atom cutoff = 4.8 494s binsize = 2.4, bins = 59 59 3 494s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 494s (1) pair gayberne, perpetual 494s attributes: half, newton on 494s pair build: half/bin/atomonly/newton 494s stencil: half/bin/2d 494s bin: standard 494s Setting up Verlet run ... 494s Unit style : lj 494s Current step : 0 494s Time step : 0.002 494s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 494s Step c_rot E_pair TotEng Press Volume 494s 0 2.3158404 0 2.394 0.04788 20000 494s 100 1.7101139 0 1.7678302 0.034413192 20548.286 494s 200 2.3115592 0 2.3895743 0.04649702 20556.796 494s 300 1.831333 0 1.8931405 0.041256922 18354.646 494s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 494s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 494s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 494s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 494s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 494s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 494s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 494s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 494s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 494s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 494s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 494s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 494s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 494s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 494s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 494s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 494s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 494s Loop time of 0.654262 on 1 procs for 2000 steps with 400 atoms 494s 494s Performance: 528229.142 tau/day, 3056.882 timesteps/s, 1.223 Matom-step/s 494s 96.5% CPU use with 1 MPI tasks x 1 OpenMP threads 494s 494s MPI task timing breakdown: 494s Section | min time | avg time | max time |%varavg| %total 494s --------------------------------------------------------------- 494s Pair | 0.43722 | 0.43722 | 0.43722 | 0.0 | 66.83 495s Neigh | 0.022456 | 0.022456 | 0.022456 | 0.0 | 3.43 495s Comm | 0.01473 | 0.01473 | 0.01473 | 0.0 | 2.25 495s Output | 0.023147 | 0.023147 | 0.023147 | 0.0 | 3.54 495s Modify | 0.14697 | 0.14697 | 0.14697 | 0.0 | 22.46 495s Other | | 0.009737 | | | 1.49 495s 495s Nlocal: 400 ave 400 max 400 min 495s Histogram: 1 0 0 0 0 0 0 0 0 0 495s Nghost: 276 ave 276 max 276 min 495s Histogram: 1 0 0 0 0 0 0 0 0 0 495s Neighs: 3122 ave 3122 max 3122 min 495s Histogram: 1 0 0 0 0 0 0 0 0 0 495s 495s Total # of neighbors = 3122 495s Ave neighs/atom = 7.805 495s Neighbor list builds = 346 495s Dangerous builds = 0 495s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 495s Setting up Verlet run ... 495s Unit style : lj 495s Current step : 2000 495s Time step : 0.002 495s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes 495s Step c_rot E_pair TotEng Press Volume 495s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 495s 2100 1.9040485 -3.6005672 -1.6802923 0.39862445 989.96894 495s 2200 1.895197 -3.5921565 -1.6947175 1.0260215 989.96894 495s 2300 2.0029243 -3.7081933 -1.6838652 0.66970181 989.96894 495s 2400 2.027189 -3.7314224 -1.7100024 0.89700379 989.96894 495s 2500 2.0661215 -3.7753462 -1.702413 0.57671817 989.96894 495s 2600 2.0610736 -3.7707907 -1.7111987 0.90914701 989.96894 495s 2700 2.0505116 -3.7599078 -1.7337505 0.65660586 989.96894 495s 2800 2.1106432 -3.8219326 -1.7370705 0.55276071 989.96894 495s 2900 2.0347944 -3.7428349 -1.7135244 0.69753379 989.96894 495s 3000 2.033092 -3.739734 -1.7515318 0.05219688 989.96894 495s 3100 1.9983562 -3.707508 -1.7158135 0.75509883 989.96894 495s 3200 2.1298063 -3.8447512 -1.7171502 1.0568228 989.96894 495s 3300 2.0791428 -3.7931834 -1.6847086 1.1627829 989.96894 495s 3400 2.1498359 -3.8650337 -1.7032074 0.58032554 989.96894 495s 3500 2.0904809 -3.805739 -1.6981978 1.0208226 989.96894 495s 3600 2.1048714 -3.8174009 -1.691117 1.0550021 989.96894 495s 3700 2.0745341 -3.7874614 -1.7155849 1.3035756 989.96894 495s 3800 2.0439729 -3.7569157 -1.7364298 0.76483567 989.96894 495s 3900 2.0498921 -3.7613373 -1.7218798 1.0164212 989.96894 495s 4000 2.0584264 -3.7719072 -1.7005071 0.89500692 989.96894 495s Loop time of 0.725099 on 1 procs for 2000 steps with 400 atoms 495s 495s Performance: 476624.325 tau/day, 2758.243 timesteps/s, 1.103 Matom-step/s 495s 96.7% CPU use with 1 MPI tasks x 1 OpenMP threads 495s 495s MPI task timing breakdown: 495s Section | min time | avg time | max time |%varavg| %total 495s --------------------------------------------------------------- 495s Pair | 0.58365 | 0.58365 | 0.58365 | 0.0 | 80.49 495s Neigh | 0.0064164 | 0.0064164 | 0.0064164 | 0.0 | 0.88 495s Comm | 0.015316 | 0.015316 | 0.015316 | 0.0 | 2.11 495s Output | 0.023496 | 0.023496 | 0.023496 | 0.0 | 3.24 495s Modify | 0.087217 | 0.087217 | 0.087217 | 0.0 | 12.03 495s Other | | 0.009007 | | | 1.24 495s 495s Nlocal: 400 ave 400 max 400 min 495s Histogram: 1 0 0 0 0 0 0 0 0 0 495s Nghost: 284 ave 284 max 284 min 495s Histogram: 1 0 0 0 0 0 0 0 0 0 495s Neighs: 3286 ave 3286 max 3286 min 495s Histogram: 1 0 0 0 0 0 0 0 0 0 495s 495s Total # of neighbors = 3286 495s Ave neighs/atom = 8.215 495s Neighbor list builds = 50 495s Dangerous builds = 0 495s Total wall time: 0:00:01 495s LAMMPS (7 Feb 2024 - Update 1) 495s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 495s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 495s using 1 OpenMP thread(s) per MPI task 495s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 495s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 495s 2 by 1 by 1 MPI processor grid 495s Created 400 atoms 495s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 495s create_atoms CPU = 0.000 seconds 495s Setting atom values ... 495s 29 settings made for type/fraction 495s Setting atom values ... 495s 371 settings made for mass 495s Setting atom values ... 495s 29 settings made for mass 495s Setting atom values ... 495s 371 settings made for shape 495s Setting atom values ... 495s 29 settings made for shape 495s Setting atom values ... 495s 400 settings made for quat/random 495s 371 atoms in group spheroid 495s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 495s Neighbor list info ... 495s update: every = 1 steps, delay = 0 steps, check = yes 495s max neighbors/atom: 2000, page size: 100000 495s master list distance cutoff = 4.8 495s ghost atom cutoff = 4.8 495s binsize = 2.4, bins = 59 59 3 495s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 495s (1) pair resquared, perpetual 495s attributes: half, newton on 495s pair build: half/bin/atomonly/newton 495s stencil: half/bin/2d 495s bin: standard 495s Setting up Verlet run ... 495s Unit style : lj 495s Current step : 0 495s Time step : 0.002 495s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 495s Step c_rot E_pair TotEng Press Volume 495s 0 2.3158404 0 2.394 0.04788 20000 495s 100 1.7101139 0 1.7678302 0.034413192 20548.286 495s 200 2.3115592 0 2.3895743 0.04649702 20556.796 495s 300 1.831333 0 1.8931405 0.041256922 18354.646 495s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 495s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 495s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 495s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 495s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 495s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 495s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 495s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 495s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 495s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 495s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 496s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 496s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 496s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 496s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 496s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 496s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 496s Loop time of 0.641373 on 2 procs for 2000 steps with 400 atoms 496s 496s Performance: 538844.362 tau/day, 3118.312 timesteps/s, 1.247 Matom-step/s 496s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 496s 496s MPI task timing breakdown: 496s Section | min time | avg time | max time |%varavg| %total 496s --------------------------------------------------------------- 496s Pair | 0.46447 | 0.47002 | 0.47557 | 0.8 | 73.28 496s Neigh | 0.01163 | 0.01292 | 0.01421 | 1.1 | 2.01 496s Comm | 0.042381 | 0.046578 | 0.050775 | 1.9 | 7.26 496s Output | 0.015885 | 0.016167 | 0.01645 | 0.2 | 2.52 496s Modify | 0.085031 | 0.085687 | 0.086342 | 0.2 | 13.36 496s Other | | 0.009998 | | | 1.56 496s 496s Nlocal: 200 ave 210 max 190 min 496s Histogram: 1 0 0 0 0 0 0 0 0 1 496s Nghost: 164 ave 168 max 160 min 496s Histogram: 1 0 0 0 0 0 0 0 0 1 496s Neighs: 910 ave 958 max 862 min 496s Histogram: 1 0 0 0 0 0 0 0 0 1 496s 496s Total # of neighbors = 1820 496s Ave neighs/atom = 4.55 496s Neighbor list builds = 420 496s Dangerous builds = 0 496s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 496s Setting up Verlet run ... 496s Unit style : lj 496s Current step : 2000 496s Time step : 0.002 496s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes 496s Step c_rot E_pair TotEng Press Volume 496s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 496s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 496s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 496s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 496s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 496s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 496s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 496s 2700 2.0106221 0.13364603 2.1384766 1.1322764 1639.6982 496s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 496s 2900 1.9922852 0.15256969 2.0956529 1.2419163 1639.6982 496s 3000 1.9618081 0.18405952 2.1392907 1.3468022 1639.6982 496s 3100 1.9208141 0.22640846 2.1223515 1.6487932 1639.6982 496s 3200 1.9201454 0.22718165 2.1360381 1.5370081 1639.6982 496s 3300 2.0073185 0.13690917 2.1185875 1.1974013 1639.6982 496s 3400 2.0179674 0.12601938 2.1227813 1.0847666 1639.6982 496s 3500 1.9561087 0.18991131 2.1150364 1.337739 1639.6982 497s 3600 1.9971228 0.14756112 2.1401422 1.2026317 1639.6982 497s 3700 1.9731706 0.1723087 2.1473857 1.273159 1639.6982 497s 3800 2.0001051 0.14443379 2.0995168 1.1502317 1639.6982 497s 3900 1.9911498 0.15371621 2.1424901 1.2279921 1639.6982 497s 4000 1.9825331 0.16267827 2.0899844 1.2154927 1639.6982 497s Loop time of 0.998446 on 2 procs for 2000 steps with 400 atoms 497s 497s Performance: 346138.065 tau/day, 2003.114 timesteps/s, 801.246 katom-step/s 497s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 497s 497s MPI task timing breakdown: 497s Section | min time | avg time | max time |%varavg| %total 497s --------------------------------------------------------------- 497s Pair | 0.801 | 0.84623 | 0.89147 | 4.9 | 84.75 497s Neigh | 0.002285 | 0.0024363 | 0.0025875 | 0.3 | 0.24 497s Comm | 0.028468 | 0.074093 | 0.11972 | 16.8 | 7.42 497s Output | 0.019435 | 0.019725 | 0.020014 | 0.2 | 1.98 497s Modify | 0.04216 | 0.044766 | 0.047372 | 1.2 | 4.48 497s Other | | 0.01119 | | | 1.12 497s 497s Nlocal: 200 ave 212 max 188 min 497s Histogram: 1 0 0 0 0 0 0 0 0 1 497s Nghost: 171.5 ave 173 max 170 min 497s Histogram: 1 0 0 0 0 0 0 0 0 1 497s Neighs: 880.5 ave 946 max 815 min 497s Histogram: 1 0 0 0 0 0 0 0 0 1 497s 497s Total # of neighbors = 1761 497s Ave neighs/atom = 4.4025 497s Neighbor list builds = 49 497s Dangerous builds = 0 497s Total wall time: 0:00:01 497s LAMMPS (7 Feb 2024 - Update 1) 498s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 498s using 1 OpenMP thread(s) per MPI task 498s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 498s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 498s 1 by 1 by 1 MPI processor grid 498s Created 400 atoms 498s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 498s create_atoms CPU = 0.000 seconds 498s Setting atom values ... 498s 29 settings made for type/fraction 498s Setting atom values ... 498s 371 settings made for mass 498s Setting atom values ... 498s 29 settings made for mass 498s Setting atom values ... 498s 371 settings made for shape 498s Setting atom values ... 498s 29 settings made for shape 498s Setting atom values ... 498s 400 settings made for quat/random 498s 371 atoms in group spheroid 498s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 498s Neighbor list info ... 498s update: every = 1 steps, delay = 0 steps, check = yes 498s max neighbors/atom: 2000, page size: 100000 498s master list distance cutoff = 4.8 498s ghost atom cutoff = 4.8 498s binsize = 2.4, bins = 59 59 3 498s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 498s (1) pair resquared, perpetual 498s attributes: half, newton on 498s pair build: half/bin/atomonly/newton 498s stencil: half/bin/2d 498s bin: standard 498s Setting up Verlet run ... 498s Unit style : lj 498s Current step : 0 498s Time step : 0.002 498s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 498s Step c_rot E_pair TotEng Press Volume 498s 0 2.3158404 0 2.394 0.04788 20000 498s 100 1.7101139 0 1.7678302 0.034413192 20548.286 498s 200 2.3115592 0 2.3895743 0.04649702 20556.796 498s 300 1.831333 0 1.8931405 0.041256922 18354.646 498s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 498s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 498s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 498s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 498s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 498s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 498s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 498s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 498s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 498s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 498s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 498s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 498s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 498s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 498s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 498s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 498s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 498s Loop time of 1.14622 on 1 procs for 2000 steps with 400 atoms 498s 498s Performance: 301513.089 tau/day, 1744.867 timesteps/s, 697.947 katom-step/s 498s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 498s 498s MPI task timing breakdown: 498s Section | min time | avg time | max time |%varavg| %total 498s --------------------------------------------------------------- 498s Pair | 0.93067 | 0.93067 | 0.93067 | 0.0 | 81.20 498s Neigh | 0.0231 | 0.0231 | 0.0231 | 0.0 | 2.02 498s Comm | 0.01226 | 0.01226 | 0.01226 | 0.0 | 1.07 498s Output | 0.022221 | 0.022221 | 0.022221 | 0.0 | 1.94 498s Modify | 0.14808 | 0.14808 | 0.14808 | 0.0 | 12.92 500s Other | | 0.009884 | | | 0.86 500s 500s Nlocal: 400 ave 400 max 400 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Nghost: 206 ave 206 max 206 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Neighs: 1820 ave 1820 max 1820 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s 500s Total # of neighbors = 1820 500s Ave neighs/atom = 4.55 500s Neighbor list builds = 420 500s Dangerous builds = 0 500s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 500s Setting up Verlet run ... 500s Unit style : lj 500s Current step : 2000 500s Time step : 0.002 500s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes 500s Step c_rot E_pair TotEng Press Volume 500s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 500s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 500s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 500s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 500s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 500s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 500s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 500s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 500s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 500s 2900 1.9922852 0.15256971 2.0956529 1.2419164 1639.6982 500s 3000 1.9618081 0.18405952 2.1392906 1.3468022 1639.6982 500s 3100 1.9208145 0.22640808 2.1223513 1.6487904 1639.6982 500s 3200 1.9201455 0.22718157 2.136038 1.5370079 1639.6982 500s 3300 2.0073203 0.13690734 2.1185861 1.1973861 1639.6982 500s 3400 2.0179675 0.12601936 2.1227814 1.0847665 1639.6982 500s 3500 1.956107 0.18991303 2.1150378 1.3377467 1639.6982 500s 3600 1.9971207 0.14756338 2.1401427 1.2026439 1639.6982 500s 3700 1.9731785 0.17230049 2.1473634 1.2731222 1639.6982 500s 3800 2.0001027 0.14443629 2.0995017 1.1502317 1639.6982 500s 3900 1.9911478 0.15371832 2.1424588 1.2279852 1639.6982 500s 4000 1.9824541 0.16275998 2.0899755 1.2158078 1639.6982 500s Loop time of 1.83132 on 1 procs for 2000 steps with 400 atoms 500s 500s Performance: 188715.973 tau/day, 1092.106 timesteps/s, 436.843 katom-step/s 500s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 500s 500s MPI task timing breakdown: 500s Section | min time | avg time | max time |%varavg| %total 500s --------------------------------------------------------------- 500s Pair | 1.6881 | 1.6881 | 1.6881 | 0.0 | 92.18 500s Neigh | 0.0046358 | 0.0046358 | 0.0046358 | 0.0 | 0.25 500s Comm | 0.012648 | 0.012648 | 0.012648 | 0.0 | 0.69 500s Output | 0.022664 | 0.022664 | 0.022664 | 0.0 | 1.24 500s Modify | 0.094127 | 0.094127 | 0.094127 | 0.0 | 5.14 500s Other | | 0.009148 | | | 0.50 500s 500s Nlocal: 400 ave 400 max 400 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Nghost: 215 ave 215 max 215 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Neighs: 1761 ave 1761 max 1761 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s 500s Total # of neighbors = 1761 500s Ave neighs/atom = 4.4025 500s Neighbor list builds = 49 500s Dangerous builds = 0 500s Total wall time: 0:00:02 500s run: OK 501s autopkgtest [02:19:06]: test ellipse: -----------------------] 504s ellipse PASS 504s autopkgtest [02:19:09]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 508s autopkgtest [02:19:13]: test flow: preparing testbed 518s Reading package lists... 519s Building dependency tree... 519s Reading state information... 519s Starting pkgProblemResolver with broken count: 0 519s Starting 2 pkgProblemResolver with broken count: 0 519s Done 520s The following NEW packages will be installed: 520s autopkgtest-satdep 520s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 520s Need to get 0 B/704 B of archives. 520s After this operation, 0 B of additional disk space will be used. 520s Get:1 /tmp/autopkgtest.NzFM76/4-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 524s Selecting previously unselected package autopkgtest-satdep. 524s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62279 files and directories currently installed.) 524s Preparing to unpack .../4-autopkgtest-satdep.deb ... 524s Unpacking autopkgtest-satdep (0) ... 524s Setting up autopkgtest-satdep (0) ... 535s (Reading database ... 62279 files and directories currently installed.) 535s Removing autopkgtest-satdep (0) ... 541s autopkgtest [02:19:46]: test flow: [----------------------- 548s LAMMPS (7 Feb 2024 - Update 1) 548s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 548s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 548s using 1 OpenMP thread(s) per MPI task 548s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 548s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 548s 2 by 1 by 1 MPI processor grid 548s Created 420 atoms 548s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 548s create_atoms CPU = 0.020 seconds 548s 60 atoms in group lower 548s 60 atoms in group upper 548s 120 atoms in group boundary 548s 300 atoms in group flow 548s Setting atom values ... 548s 60 settings made for type 548s Setting atom values ... 548s 60 settings made for type 548s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 548s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 548s Neighbor list info ... 548s update: every = 1 steps, delay = 5 steps, check = yes 548s max neighbors/atom: 2000, page size: 100000 548s master list distance cutoff = 1.42246 548s ghost atom cutoff = 1.42246 548s binsize = 0.71123, bins = 37 32 1 548s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 548s (1) pair lj/cut, perpetual 548s attributes: half, newton on 548s pair build: half/bin/atomonly/newton 548s stencil: half/bin/2d 548s bin: standard 548s Setting up Verlet run ... 548s Unit style : lj 548s Current step : 0 548s Time step : 0.003 548s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 548s Step Temp E_pair E_mol TotEng Press Volume 548s 0 1 0 0 0.71190476 0.52314537 571.54286 548s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 548s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 548s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 548s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 548s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 548s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 548s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 548s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 548s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 548s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 548s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 548s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 548s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 548s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 548s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 548s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 548s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 548s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 548s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 548s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 548s Loop time of 0.19295 on 2 procs for 10000 steps with 420 atoms 548s 548s Performance: 13433499.490 tau/day, 51826.773 timesteps/s, 21.767 Matom-step/s 548s 100.0% CPU use with 2 MPI tasks x 1 OpenMP threads 548s 548s MPI task timing breakdown: 548s Section | min time | avg time | max time |%varavg| %total 548s --------------------------------------------------------------- 548s Pair | 0.045512 | 0.045534 | 0.045557 | 0.0 | 23.60 548s Neigh | 0.021083 | 0.021198 | 0.021314 | 0.1 | 10.99 548s Comm | 0.065399 | 0.065623 | 0.065847 | 0.1 | 34.01 548s Output | 0.00032789 | 0.00068071 | 0.0010335 | 0.0 | 0.35 548s Modify | 0.033334 | 0.033404 | 0.033475 | 0.0 | 17.31 548s Other | | 0.02651 | | | 13.74 548s 548s Nlocal: 210 ave 213 max 207 min 548s Histogram: 1 0 0 0 0 0 0 0 0 1 548s Nghost: 50.5 ave 51 max 50 min 548s Histogram: 1 0 0 0 0 0 0 0 0 1 548s Neighs: 480.5 ave 492 max 469 min 548s Histogram: 1 0 0 0 0 0 0 0 0 1 548s 548s Total # of neighbors = 961 548s Ave neighs/atom = 2.2880952 548s Neighbor list builds = 964 548s Dangerous builds = 0 548s Total wall time: 0:00:00 549s LAMMPS (7 Feb 2024 - Update 1) 549s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 549s using 1 OpenMP thread(s) per MPI task 549s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 549s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 549s 1 by 1 by 1 MPI processor grid 549s Created 420 atoms 549s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 549s create_atoms CPU = 0.001 seconds 549s 60 atoms in group lower 549s 60 atoms in group upper 549s 120 atoms in group boundary 549s 300 atoms in group flow 549s Setting atom values ... 549s 60 settings made for type 549s Setting atom values ... 549s 60 settings made for type 549s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 549s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 549s Neighbor list info ... 549s update: every = 1 steps, delay = 5 steps, check = yes 549s max neighbors/atom: 2000, page size: 100000 549s master list distance cutoff = 1.42246 549s ghost atom cutoff = 1.42246 549s binsize = 0.71123, bins = 37 32 1 549s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 549s (1) pair lj/cut, perpetual 549s attributes: half, newton on 549s pair build: half/bin/atomonly/newton 549s stencil: half/bin/2d 549s bin: standard 549s Setting up Verlet run ... 549s Unit style : lj 549s Current step : 0 549s Time step : 0.003 549s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 549s Step Temp E_pair E_mol TotEng Press Volume 549s 0 1 0 0 0.71190476 0.52314537 571.54286 549s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 549s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 549s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 549s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 549s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 549s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 549s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 549s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 549s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 549s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 549s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 549s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 549s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 549s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 549s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 549s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 549s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 549s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 549s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 549s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 549s Loop time of 0.235876 on 1 procs for 10000 steps with 420 atoms 549s 549s Performance: 10988802.228 tau/day, 42395.070 timesteps/s, 17.806 Matom-step/s 549s 93.5% CPU use with 1 MPI tasks x 1 OpenMP threads 549s 549s MPI task timing breakdown: 549s Section | min time | avg time | max time |%varavg| %total 549s --------------------------------------------------------------- 549s Pair | 0.091405 | 0.091405 | 0.091405 | 0.0 | 38.75 549s Neigh | 0.041944 | 0.041944 | 0.041944 | 0.0 | 17.78 549s Comm | 0.015471 | 0.015471 | 0.015471 | 0.0 | 6.56 549s Output | 0.00033765 | 0.00033765 | 0.00033765 | 0.0 | 0.14 549s Modify | 0.058319 | 0.058319 | 0.058319 | 0.0 | 24.72 549s Other | | 0.0284 | | | 12.04 549s 549s Nlocal: 420 ave 420 max 420 min 549s Histogram: 1 0 0 0 0 0 0 0 0 0 549s Nghost: 46 ave 46 max 46 min 549s Histogram: 1 0 0 0 0 0 0 0 0 0 549s Neighs: 952 ave 952 max 952 min 549s Histogram: 1 0 0 0 0 0 0 0 0 0 549s 549s Total # of neighbors = 952 549s Ave neighs/atom = 2.2666667 549s Neighbor list builds = 996 549s Dangerous builds = 0 549s Total wall time: 0:00:00 550s LAMMPS (7 Feb 2024 - Update 1) 550s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 550s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 550s using 1 OpenMP thread(s) per MPI task 550s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 550s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 550s 2 by 1 by 1 MPI processor grid 550s Created 420 atoms 550s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 550s create_atoms CPU = 0.000 seconds 550s 60 atoms in group lower 550s 60 atoms in group upper 550s 120 atoms in group boundary 550s 300 atoms in group flow 550s Setting atom values ... 550s 60 settings made for type 550s Setting atom values ... 550s 60 settings made for type 550s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 550s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 550s Neighbor list info ... 550s update: every = 1 steps, delay = 5 steps, check = yes 550s max neighbors/atom: 2000, page size: 100000 550s master list distance cutoff = 1.42246 550s ghost atom cutoff = 1.42246 550s binsize = 0.71123, bins = 37 32 1 550s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 550s (1) pair lj/cut, perpetual 550s attributes: half, newton on 550s pair build: half/bin/atomonly/newton 550s stencil: half/bin/2d 550s bin: standard 550s Setting up Verlet run ... 550s Unit style : lj 550s Current step : 0 550s Time step : 0.003 550s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 550s Step Temp E_pair E_mol TotEng Press Volume 550s 0 1 0 0 0.71190476 0.52314537 571.54286 550s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 550s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 550s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 550s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 550s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 550s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 550s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 550s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 550s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 550s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 550s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 550s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 550s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 550s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 550s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 550s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 550s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 550s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 550s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 550s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 550s Loop time of 0.405433 on 2 procs for 10000 steps with 420 atoms 550s 550s Performance: 6393166.747 tau/day, 24664.995 timesteps/s, 10.359 Matom-step/s 550s 89.0% CPU use with 2 MPI tasks x 1 OpenMP threads 550s 550s MPI task timing breakdown: 550s Section | min time | avg time | max time |%varavg| %total 550s --------------------------------------------------------------- 550s Pair | 0.049797 | 0.050063 | 0.05033 | 0.1 | 12.35 550s Neigh | 0.012687 | 0.012698 | 0.012708 | 0.0 | 3.13 550s Comm | 0.099505 | 0.10082 | 0.10214 | 0.4 | 24.87 550s Output | 0.00035973 | 0.0064768 | 0.012594 | 7.6 | 1.60 550s Modify | 0.064872 | 0.065656 | 0.06644 | 0.3 | 16.19 550s Other | | 0.1697 | | | 41.86 550s 550s Nlocal: 210 ave 213 max 207 min 550s Histogram: 1 0 0 0 0 0 0 0 0 1 550s Nghost: 50 ave 51 max 49 min 550s Histogram: 1 0 0 0 0 0 0 0 0 1 550s Neighs: 558.5 ave 573 max 544 min 550s Histogram: 1 0 0 0 0 0 0 0 0 1 550s 550s Total # of neighbors = 1117 550s Ave neighs/atom = 2.6595238 550s Neighbor list builds = 562 550s Dangerous builds = 0 550s Total wall time: 0:00:00 551s LAMMPS (7 Feb 2024 - Update 1) 551s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 551s using 1 OpenMP thread(s) per MPI task 551s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 551s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 551s 1 by 1 by 1 MPI processor grid 551s Created 420 atoms 551s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 551s create_atoms CPU = 0.000 seconds 551s 60 atoms in group lower 551s 60 atoms in group upper 551s 120 atoms in group boundary 551s 300 atoms in group flow 551s Setting atom values ... 551s 60 settings made for type 551s Setting atom values ... 551s 60 settings made for type 551s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 551s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 551s Neighbor list info ... 551s update: every = 1 steps, delay = 5 steps, check = yes 551s max neighbors/atom: 2000, page size: 100000 551s master list distance cutoff = 1.42246 551s ghost atom cutoff = 1.42246 551s binsize = 0.71123, bins = 37 32 1 551s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 551s (1) pair lj/cut, perpetual 551s attributes: half, newton on 551s pair build: half/bin/atomonly/newton 551s stencil: half/bin/2d 551s bin: standard 551s Setting up Verlet run ... 551s Unit style : lj 551s Current step : 0 551s Time step : 0.003 551s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 551s Step Temp E_pair E_mol TotEng Press Volume 551s 0 1 0 0 0.71190476 0.52314537 571.54286 551s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 551s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 551s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 551s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 551s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 551s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 551s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 551s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 551s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 551s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 551s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 551s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 551s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 551s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 551s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 551s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 551s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 551s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 551s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 551s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 551s Loop time of 0.272595 on 1 procs for 10000 steps with 420 atoms 551s 551s Performance: 9508608.502 tau/day, 36684.446 timesteps/s, 15.407 Matom-step/s 551s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 551s 551s MPI task timing breakdown: 551s Section | min time | avg time | max time |%varavg| %total 551s --------------------------------------------------------------- 551s Pair | 0.10171 | 0.10171 | 0.10171 | 0.0 | 37.31 551s Neigh | 0.02366 | 0.02366 | 0.02366 | 0.0 | 8.68 551s Comm | 0.012951 | 0.012951 | 0.012951 | 0.0 | 4.75 551s Output | 0.00041393 | 0.00041393 | 0.00041393 | 0.0 | 0.15 551s Modify | 0.10509 | 0.10509 | 0.10509 | 0.0 | 38.55 551s Other | | 0.02876 | | | 10.55 551s 551s Nlocal: 420 ave 420 max 420 min 551s Histogram: 1 0 0 0 0 0 0 0 0 0 551s Nghost: 48 ave 48 max 48 min 551s Histogram: 1 0 0 0 0 0 0 0 0 0 551s Neighs: 1124 ave 1124 max 1124 min 551s Histogram: 1 0 0 0 0 0 0 0 0 0 551s 551s Total # of neighbors = 1124 551s Ave neighs/atom = 2.6761905 551s Neighbor list builds = 561 551s Dangerous builds = 0 551s Total wall time: 0:00:00 551s run: OK 552s autopkgtest [02:19:57]: test flow: -----------------------] 556s autopkgtest [02:20:01]: test flow: - - - - - - - - - - results - - - - - - - - - - 556s flow PASS 560s autopkgtest [02:20:05]: test friction: preparing testbed 570s Reading package lists... 570s Building dependency tree... 570s Reading state information... 571s Starting pkgProblemResolver with broken count: 0 571s Starting 2 pkgProblemResolver with broken count: 0 571s Done 572s The following NEW packages will be installed: 572s autopkgtest-satdep 573s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 573s Need to get 0 B/704 B of archives. 573s After this operation, 0 B of additional disk space will be used. 573s Get:1 /tmp/autopkgtest.NzFM76/5-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 585s Selecting previously unselected package autopkgtest-satdep. 585s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62279 files and directories currently installed.) 585s Preparing to unpack .../5-autopkgtest-satdep.deb ... 585s Unpacking autopkgtest-satdep (0) ... 585s Setting up autopkgtest-satdep (0) ... 598s (Reading database ... 62279 files and directories currently installed.) 598s Removing autopkgtest-satdep (0) ... 606s autopkgtest [02:20:51]: test friction: [----------------------- 614s LAMMPS (7 Feb 2024 - Update 1) 614s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 614s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 614s using 1 OpenMP thread(s) per MPI task 614s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 614s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 614s 2 by 1 by 1 MPI processor grid 615s Created 750 atoms 615s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 615s create_atoms CPU = 0.027 seconds 615s Created 750 atoms 615s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 615s create_atoms CPU = 0.000 seconds 615s Created 112 atoms 615s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 615s create_atoms CPU = 0.000 seconds 615s Created 112 atoms 615s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 615s create_atoms CPU = 0.000 seconds 615s 750 atoms in group lo 615s 862 atoms in group lo 615s 750 atoms in group hi 615s 862 atoms in group hi 615s 150 atoms in group lo-fixed 615s 150 atoms in group hi-fixed 615s 300 atoms in group boundary 615s 1424 atoms in group mobile 615s Setting atom values ... 615s 150 settings made for type 615s Setting atom values ... 615s 150 settings made for type 615s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 615s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 615s Neighbor list info ... 615s update: every = 1 steps, delay = 5 steps, check = yes 615s max neighbors/atom: 2000, page size: 100000 615s master list distance cutoff = 2.8 615s ghost atom cutoff = 2.8 615s binsize = 1.4, bins = 41 31 1 615s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 615s (1) pair lj/cut, perpetual 615s attributes: half, newton on 615s pair build: half/bin/atomonly/newton 615s stencil: half/bin/2d 615s bin: standard 615s Setting up Verlet run ... 615s Unit style : lj 615s Current step : 0 615s Time step : 0.0025 615s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes 615s Step Temp E_pair E_mol TotEng Press Volume 615s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 615s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 615s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 615s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 615s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 615s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 616s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 616s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 616s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 616s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 616s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 616s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 617s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 617s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 617s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 617s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 617s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 617s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 617s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 618s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 618s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 618s Loop time of 2.95601 on 2 procs for 20000 steps with 1724 atoms 618s 618s Performance: 1461431.806 tau/day, 6765.888 timesteps/s, 11.664 Matom-step/s 618s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 618s 618s MPI task timing breakdown: 618s Section | min time | avg time | max time |%varavg| %total 618s --------------------------------------------------------------- 618s Pair | 1.933 | 2.0755 | 2.2181 | 9.9 | 70.21 618s Neigh | 0.10344 | 0.11421 | 0.12498 | 3.2 | 3.86 618s Comm | 0.22433 | 0.38557 | 0.54681 | 26.0 | 13.04 618s Output | 0.00048641 | 0.00081301 | 0.0011396 | 0.0 | 0.03 618s Modify | 0.21225 | 0.22613 | 0.24001 | 2.9 | 7.65 618s Other | | 0.1537 | | | 5.20 618s 618s Nlocal: 862 ave 868 max 856 min 618s Histogram: 1 0 0 0 0 0 0 0 0 1 618s Nghost: 160.5 ave 161 max 160 min 618s Histogram: 1 0 0 0 0 0 0 0 0 1 618s Neighs: 7178.5 ave 7223 max 7134 min 618s Histogram: 1 0 0 0 0 0 0 0 0 1 618s 618s Total # of neighbors = 14357 618s Ave neighs/atom = 8.3277262 618s Neighbor list builds = 716 618s Dangerous builds = 0 618s Total wall time: 0:00:03 619s LAMMPS (7 Feb 2024 - Update 1) 623s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 623s using 1 OpenMP thread(s) per MPI task 623s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 623s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 623s 1 by 1 by 1 MPI processor grid 623s Created 750 atoms 623s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 623s create_atoms CPU = 0.000 seconds 623s Created 750 atoms 623s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 623s create_atoms CPU = 0.000 seconds 623s Created 112 atoms 623s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 623s create_atoms CPU = 0.000 seconds 623s Created 112 atoms 623s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 623s create_atoms CPU = 0.000 seconds 623s 750 atoms in group lo 623s 862 atoms in group lo 623s 750 atoms in group hi 623s 862 atoms in group hi 623s 150 atoms in group lo-fixed 623s 150 atoms in group hi-fixed 623s 300 atoms in group boundary 623s 1424 atoms in group mobile 623s Setting atom values ... 623s 150 settings made for type 623s Setting atom values ... 623s 150 settings made for type 623s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 623s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 623s Neighbor list info ... 623s update: every = 1 steps, delay = 5 steps, check = yes 623s max neighbors/atom: 2000, page size: 100000 623s master list distance cutoff = 2.8 623s ghost atom cutoff = 2.8 623s binsize = 1.4, bins = 41 31 1 623s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 623s (1) pair lj/cut, perpetual 623s attributes: half, newton on 623s pair build: half/bin/atomonly/newton 623s stencil: half/bin/2d 623s bin: standard 623s Setting up Verlet run ... 623s Unit style : lj 623s Current step : 0 623s Time step : 0.0025 623s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes 623s Step Temp E_pair E_mol TotEng Press Volume 623s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 623s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 623s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 623s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 623s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 623s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 623s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 623s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 623s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 623s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 623s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 623s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 623s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 623s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 623s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 623s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 623s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 623s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 623s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 624s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 624s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 624s Loop time of 5.08325 on 1 procs for 20000 steps with 1724 atoms 624s 624s Performance: 849849.389 tau/day, 3934.488 timesteps/s, 6.783 Matom-step/s 624s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 624s 624s MPI task timing breakdown: 624s Section | min time | avg time | max time |%varavg| %total 624s --------------------------------------------------------------- 624s Pair | 4.0693 | 4.0693 | 4.0693 | 0.0 | 80.05 624s Neigh | 0.2115 | 0.2115 | 0.2115 | 0.0 | 4.16 624s Comm | 0.053054 | 0.053054 | 0.053054 | 0.0 | 1.04 624s Output | 0.00076485 | 0.00076485 | 0.00076485 | 0.0 | 0.02 624s Modify | 0.43979 | 0.43979 | 0.43979 | 0.0 | 8.65 624s Other | | 0.3089 | | | 6.08 624s 624s Nlocal: 1724 ave 1724 max 1724 min 624s Histogram: 1 0 0 0 0 0 0 0 0 0 624s Nghost: 144 ave 144 max 144 min 624s Histogram: 1 0 0 0 0 0 0 0 0 0 624s Neighs: 14364 ave 14364 max 14364 min 624s Histogram: 1 0 0 0 0 0 0 0 0 0 624s 624s Total # of neighbors = 14364 624s Ave neighs/atom = 8.3317865 624s Neighbor list builds = 714 624s Dangerous builds = 0 624s Total wall time: 0:00:05 624s run: OK 624s autopkgtest [02:21:09]: test friction: -----------------------] 628s friction PASS 628s autopkgtest [02:21:13]: test friction: - - - - - - - - - - results - - - - - - - - - - 632s autopkgtest [02:21:17]: test hugo: preparing testbed 642s Reading package lists... 642s Building dependency tree... 642s Reading state information... 643s Starting pkgProblemResolver with broken count: 0 643s Starting 2 pkgProblemResolver with broken count: 0 643s Done 644s The following NEW packages will be installed: 644s autopkgtest-satdep 644s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 644s Need to get 0 B/704 B of archives. 644s After this operation, 0 B of additional disk space will be used. 644s Get:1 /tmp/autopkgtest.NzFM76/6-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 646s Selecting previously unselected package autopkgtest-satdep. 646s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62279 files and directories currently installed.) 646s Preparing to unpack .../6-autopkgtest-satdep.deb ... 646s Unpacking autopkgtest-satdep (0) ... 646s Setting up autopkgtest-satdep (0) ... 655s (Reading database ... 62279 files and directories currently installed.) 655s Removing autopkgtest-satdep (0) ... 661s autopkgtest [02:21:46]: test hugo: [----------------------- 663s LAMMPS (7 Feb 2024 - Update 1) 663s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 663s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 663s using 1 OpenMP thread(s) per MPI task 663s Lattice spacing in x,y,z = 1.4142135 2 2 663s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 663s 1 by 1 by 2 MPI processor grid 663s Created 1000 atoms 663s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 663s create_atoms CPU = 0.000 seconds 663s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 663s Neighbor list info ... 663s update: every = 1 steps, delay = 0 steps, check = yes 663s max neighbors/atom: 2000, page size: 100000 663s master list distance cutoff = 1.8475372 663s ghost atom cutoff = 1.8475372 664s binsize = 0.92376862, bins = 8 11 11 664s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 664s (1) pair lj/cubic, perpetual 664s attributes: half, newton on 664s pair build: half/bin/atomonly/newton 664s stencil: half/bin/3d 664s bin: standard 664s Setting up cg style minimization ... 664s Unit style : lj 664s Current step : 0 664s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 664s (src/min.cpp:219) 664s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes 664s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 664s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 664s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 664s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 664s Loop time of 0.0364407 on 2 procs for 134 steps with 1000 atoms 664s 664s 100.0% CPU use with 2 MPI tasks x 1 OpenMP threads 664s 664s Minimization stats: 664s Stopping criterion = force tolerance 664s Energy initial, next-to-last, final = 664s -6.29375358358574 -6.33442531515467 -6.33442531515467 664s Force two-norm initial, final = 3395.2895 5.5900884e-10 664s Force max component initial, final = 1960.2713 3.2516979e-10 664s Final line search alpha, max atom move = 1 3.2516979e-10 664s Iterations, force evaluations = 134 137 664s 664s MPI task timing breakdown: 664s Section | min time | avg time | max time |%varavg| %total 664s --------------------------------------------------------------- 664s Pair | 0.021559 | 0.023275 | 0.024992 | 1.1 | 63.87 664s Neigh | 0.00037825 | 0.00042637 | 0.00047449 | 0.0 | 1.17 664s Comm | 0.0035459 | 0.0052929 | 0.0070398 | 2.4 | 14.52 664s Output | 2.032e-05 | 3.6861e-05 | 5.3401e-05 | 0.0 | 0.10 664s Modify | 0 | 0 | 0 | 0.0 | 0.00 664s Other | | 0.007409 | | | 20.33 664s 664s Nlocal: 500 ave 550 max 450 min 664s Histogram: 1 0 0 0 0 0 0 0 0 1 664s Nghost: 1214 ave 1264 max 1164 min 664s Histogram: 1 0 0 0 0 0 0 0 0 1 664s Neighs: 10500 ave 11550 max 9450 min 664s Histogram: 1 0 0 0 0 0 0 0 0 1 664s 664s Total # of neighbors = 21000 664s Ave neighs/atom = 21 664s Neighbor list builds = 1 664s Dangerous builds = 0 664s System init for write_restart ... 664s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 664s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 664s using 1 OpenMP thread(s) per MPI task 664s Reading restart file ... 664s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 664s restoring atom style atomic from restart 664s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 664s 1 by 1 by 2 MPI processor grid 664s restoring pair style lj/cubic from restart 664s 1000 atoms 664s read_restart CPU = 0.001 seconds 664s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 664s Neighbor list info ... 664s update: every = 1 steps, delay = 0 steps, check = yes 664s max neighbors/atom: 2000, page size: 100000 664s master list distance cutoff = 1.7475372 664s ghost atom cutoff = 1.7475372 664s binsize = 0.87376862, bins = 8 12 12 664s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 664s (1) pair lj/cubic, perpetual 664s attributes: half, newton on 664s pair build: half/bin/atomonly/newton 664s stencil: half/bin/3d 664s bin: standard 664s Setting up Verlet run ... 664s Unit style : lj 664s Current step : 0 664s Time step : 0.001 664s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 664s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 664s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 664s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 664s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 665s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 665s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 665s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 665s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 666s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 666s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 667s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 667s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 667s Loop time of 3.27953 on 2 procs for 10000 steps with 1000 atoms 667s 667s Performance: 263452.032 tau/day, 3049.213 timesteps/s, 3.049 Matom-step/s 667s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 667s 667s MPI task timing breakdown: 667s Section | min time | avg time | max time |%varavg| %total 667s --------------------------------------------------------------- 667s Pair | 2.1573 | 2.2418 | 2.3264 | 5.6 | 68.36 667s Neigh | 0.084741 | 0.088427 | 0.092112 | 1.2 | 2.70 667s Comm | 0.31188 | 0.3995 | 0.48711 | 13.9 | 12.18 667s Output | 0.00060921 | 0.00069651 | 0.00078381 | 0.0 | 0.02 667s Modify | 0.48014 | 0.48031 | 0.48047 | 0.0 | 14.65 667s Other | | 0.06876 | | | 2.10 667s 667s Nlocal: 500 ave 510 max 490 min 667s Histogram: 1 0 0 0 0 0 0 0 0 1 667s Nghost: 1351.5 ave 1357 max 1346 min 667s Histogram: 1 0 0 0 0 0 0 0 0 1 667s Neighs: 10160.5 ave 10780 max 9541 min 667s Histogram: 1 0 0 0 0 0 0 0 0 1 667s 667s Total # of neighbors = 20321 667s Ave neighs/atom = 20.321 667s Neighbor list builds = 194 667s Dangerous builds = 0 667s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 667s using 1 OpenMP thread(s) per MPI task 667s Reading restart file ... 667s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 667s restoring atom style atomic from restart 667s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 667s 1 by 1 by 2 MPI processor grid 667s restoring pair style lj/cubic from restart 667s 1000 atoms 667s read_restart CPU = 0.000 seconds 667s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 667s Neighbor list info ... 667s update: every = 1 steps, delay = 0 steps, check = yes 667s max neighbors/atom: 2000, page size: 100000 667s master list distance cutoff = 1.7475372 667s ghost atom cutoff = 1.7475372 667s binsize = 0.87376862, bins = 8 12 12 667s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 667s (1) pair lj/cubic, perpetual 667s attributes: half, newton on 667s pair build: half/bin/atomonly/newton 667s stencil: half/bin/3d 667s bin: standard 667s Setting up Verlet run ... 667s Unit style : lj 667s Current step : 0 667s Time step : 0.001 667s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 667s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 667s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 667s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 667s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 668s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 668s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 668s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 668s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 669s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 669s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 669s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 670s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 670s Loop time of 2.72403 on 2 procs for 10000 steps with 1000 atoms 670s 670s Performance: 317177.477 tau/day, 3671.036 timesteps/s, 3.671 Matom-step/s 670s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads 670s 670s MPI task timing breakdown: 670s Section | min time | avg time | max time |%varavg| %total 670s --------------------------------------------------------------- 670s Pair | 1.9406 | 1.9592 | 1.9779 | 1.3 | 71.92 670s Neigh | 0.0045034 | 0.004506 | 0.0045087 | 0.0 | 0.17 670s Comm | 0.25734 | 0.27701 | 0.29668 | 3.7 | 10.17 670s Output | 0.00059825 | 0.00069885 | 0.00079945 | 0.0 | 0.03 670s Modify | 0.41595 | 0.41696 | 0.41797 | 0.2 | 15.31 670s Other | | 0.06563 | | | 2.41 670s 670s Nlocal: 500 ave 503 max 497 min 670s Histogram: 1 0 0 0 0 0 0 0 0 1 670s Nghost: 1214 ave 1217 max 1211 min 670s Histogram: 1 0 0 0 0 0 0 0 0 1 670s Neighs: 10500 ave 10560 max 10440 min 670s Histogram: 1 0 0 0 0 0 0 0 0 1 670s 670s Total # of neighbors = 21000 670s Ave neighs/atom = 21 670s Neighbor list builds = 10 670s Dangerous builds = 0 670s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 670s using 1 OpenMP thread(s) per MPI task 670s Reading restart file ... 670s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 670s restoring atom style atomic from restart 670s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 670s 1 by 1 by 2 MPI processor grid 670s restoring pair style lj/cubic from restart 670s 1000 atoms 670s read_restart CPU = 0.001 seconds 670s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 670s Neighbor list info ... 670s update: every = 1 steps, delay = 0 steps, check = yes 670s max neighbors/atom: 2000, page size: 100000 670s master list distance cutoff = 1.7475372 670s ghost atom cutoff = 1.7475372 670s binsize = 0.87376862, bins = 8 12 12 670s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 670s (1) pair lj/cubic, perpetual 670s attributes: half, newton on 670s pair build: half/bin/atomonly/newton 670s stencil: half/bin/3d 670s bin: standard 670s Setting up Verlet run ... 670s Unit style : lj 670s Current step : 0 670s Time step : 0.001 670s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 670s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 670s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 670s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 670s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 670s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 671s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 671s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 671s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 672s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 672s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 672s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 672s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 672s Loop time of 2.82906 on 2 procs for 10000 steps with 1000 atoms 672s 672s Performance: 305401.342 tau/day, 3534.738 timesteps/s, 3.535 Matom-step/s 672s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 672s 672s MPI task timing breakdown: 672s Section | min time | avg time | max time |%varavg| %total 672s --------------------------------------------------------------- 672s Pair | 1.9894 | 1.9926 | 1.9958 | 0.2 | 70.43 672s Neigh | 0.041072 | 0.041145 | 0.041218 | 0.0 | 1.45 672s Comm | 0.29074 | 0.29521 | 0.29968 | 0.8 | 10.43 672s Output | 0.00059621 | 0.00069745 | 0.00079869 | 0.0 | 0.02 672s Modify | 0.42965 | 0.43097 | 0.4323 | 0.2 | 15.23 672s Other | | 0.06847 | | | 2.42 672s 672s Nlocal: 500 ave 503 max 497 min 672s Histogram: 1 0 0 0 0 0 0 0 0 1 672s Nghost: 1217.5 ave 1219 max 1216 min 672s Histogram: 1 0 0 0 0 0 0 0 0 1 672s Neighs: 10291 ave 10353 max 10229 min 672s Histogram: 1 0 0 0 0 0 0 0 0 1 672s 672s Total # of neighbors = 20582 672s Ave neighs/atom = 20.582 672s Neighbor list builds = 89 672s Dangerous builds = 0 672s Total wall time: 0:00:08 673s LAMMPS (7 Feb 2024 - Update 1) 673s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 673s using 1 OpenMP thread(s) per MPI task 673s Lattice spacing in x,y,z = 1.4142135 2 2 673s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 673s 1 by 1 by 1 MPI processor grid 673s Created 1000 atoms 673s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 673s create_atoms CPU = 0.000 seconds 673s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 673s Neighbor list info ... 673s update: every = 1 steps, delay = 0 steps, check = yes 673s max neighbors/atom: 2000, page size: 100000 673s master list distance cutoff = 1.8475372 673s ghost atom cutoff = 1.8475372 673s binsize = 0.92376862, bins = 8 11 11 673s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 673s (1) pair lj/cubic, perpetual 673s attributes: half, newton on 673s pair build: half/bin/atomonly/newton 673s stencil: half/bin/3d 673s bin: standard 673s Setting up cg style minimization ... 673s Unit style : lj 673s Current step : 0 673s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 673s (src/min.cpp:219) 673s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes 673s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 673s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 673s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 673s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 673s Loop time of 0.0598122 on 1 procs for 134 steps with 1000 atoms 673s 673s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 673s 673s Minimization stats: 673s Stopping criterion = force tolerance 673s Energy initial, next-to-last, final = 673s -6.29375358358557 -6.33442531515503 -6.33442531515503 673s Force two-norm initial, final = 3395.2895 5.5740327e-10 673s Force max component initial, final = 1960.2713 3.2730334e-10 673s Final line search alpha, max atom move = 1 3.2730334e-10 673s Iterations, force evaluations = 134 137 673s 673s MPI task timing breakdown: 673s Section | min time | avg time | max time |%varavg| %total 673s --------------------------------------------------------------- 673s Pair | 0.047026 | 0.047026 | 0.047026 | 0.0 | 78.62 673s Neigh | 0.00081753 | 0.00081753 | 0.00081753 | 0.0 | 1.37 673s Comm | 0.0012764 | 0.0012764 | 0.0012764 | 0.0 | 2.13 673s Output | 2.6961e-05 | 2.6961e-05 | 2.6961e-05 | 0.0 | 0.05 673s Modify | 0 | 0 | 0 | 0.0 | 0.00 673s Other | | 0.01067 | | | 17.83 673s 673s Nlocal: 1000 ave 1000 max 1000 min 673s Histogram: 1 0 0 0 0 0 0 0 0 0 673s Nghost: 1724 ave 1724 max 1724 min 673s Histogram: 1 0 0 0 0 0 0 0 0 0 673s Neighs: 21000 ave 21000 max 21000 min 673s Histogram: 1 0 0 0 0 0 0 0 0 0 673s 673s Total # of neighbors = 21000 673s Ave neighs/atom = 21 673s Neighbor list builds = 1 673s Dangerous builds = 0 673s System init for write_restart ... 673s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 673s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 673s using 1 OpenMP thread(s) per MPI task 673s Reading restart file ... 673s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 673s restoring atom style atomic from restart 673s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 673s 1 by 1 by 1 MPI processor grid 673s restoring pair style lj/cubic from restart 673s 1000 atoms 673s read_restart CPU = 0.000 seconds 673s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 673s Neighbor list info ... 673s update: every = 1 steps, delay = 0 steps, check = yes 673s max neighbors/atom: 2000, page size: 100000 673s master list distance cutoff = 1.7475372 673s ghost atom cutoff = 1.7475372 673s binsize = 0.87376862, bins = 8 12 12 673s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 679s (1) pair lj/cubic, perpetual 679s attributes: half, newton on 679s pair build: half/bin/atomonly/newton 679s stencil: half/bin/3d 679s bin: standard 679s Setting up Verlet run ... 679s Unit style : lj 679s Current step : 0 679s Time step : 0.001 679s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 679s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 679s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 679s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 679s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 679s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 679s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 679s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 679s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 679s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 679s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 679s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 679s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 679s Loop time of 5.65442 on 1 procs for 10000 steps with 1000 atoms 679s 679s Performance: 152800.808 tau/day, 1768.528 timesteps/s, 1.769 Matom-step/s 679s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 679s 679s MPI task timing breakdown: 679s Section | min time | avg time | max time |%varavg| %total 679s --------------------------------------------------------------- 679s Pair | 4.3966 | 4.3966 | 4.3966 | 0.0 | 77.76 679s Neigh | 0.1675 | 0.1675 | 0.1675 | 0.0 | 2.96 679s Comm | 0.12806 | 0.12806 | 0.12806 | 0.0 | 2.26 679s Output | 0.00055593 | 0.00055593 | 0.00055593 | 0.0 | 0.01 679s Modify | 0.8794 | 0.8794 | 0.8794 | 0.0 | 15.55 679s Other | | 0.08229 | | | 1.46 679s 679s Nlocal: 1000 ave 1000 max 1000 min 679s Histogram: 1 0 0 0 0 0 0 0 0 0 679s Nghost: 1886 ave 1886 max 1886 min 679s Histogram: 1 0 0 0 0 0 0 0 0 0 679s Neighs: 20874 ave 20874 max 20874 min 679s Histogram: 1 0 0 0 0 0 0 0 0 0 679s 679s Total # of neighbors = 20874 679s Ave neighs/atom = 20.874 679s Neighbor list builds = 188 679s Dangerous builds = 0 679s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 679s using 1 OpenMP thread(s) per MPI task 679s Reading restart file ... 679s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 679s restoring atom style atomic from restart 679s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 679s 1 by 1 by 1 MPI processor grid 679s restoring pair style lj/cubic from restart 679s 1000 atoms 679s read_restart CPU = 0.058 seconds 679s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 679s Neighbor list info ... 684s update: every = 1 steps, delay = 0 steps, check = yes 684s max neighbors/atom: 2000, page size: 100000 684s master list distance cutoff = 1.7475372 684s ghost atom cutoff = 1.7475372 684s binsize = 0.87376862, bins = 8 12 12 684s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 684s (1) pair lj/cubic, perpetual 684s attributes: half, newton on 684s pair build: half/bin/atomonly/newton 684s stencil: half/bin/3d 684s bin: standard 684s Setting up Verlet run ... 684s Unit style : lj 684s Current step : 0 684s Time step : 0.001 684s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 684s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 684s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 684s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 684s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 684s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 684s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 684s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 684s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 684s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 684s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 684s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 684s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 684s Loop time of 4.7656 on 1 procs for 10000 steps with 1000 atoms 684s 684s Performance: 181299.291 tau/day, 2098.371 timesteps/s, 2.098 Matom-step/s 684s 98.3% CPU use with 1 MPI tasks x 1 OpenMP threads 684s 684s MPI task timing breakdown: 684s Section | min time | avg time | max time |%varavg| %total 684s --------------------------------------------------------------- 684s Pair | 3.9613 | 3.9613 | 3.9613 | 0.0 | 83.12 684s Neigh | 0.0097763 | 0.0097763 | 0.0097763 | 0.0 | 0.21 684s Comm | 0.089799 | 0.089799 | 0.089799 | 0.0 | 1.88 684s Output | 0.00056925 | 0.00056925 | 0.00056925 | 0.0 | 0.01 684s Modify | 0.62394 | 0.62394 | 0.62394 | 0.0 | 13.09 684s Other | | 0.08023 | | | 1.68 684s 684s Nlocal: 1000 ave 1000 max 1000 min 684s Histogram: 1 0 0 0 0 0 0 0 0 0 684s Nghost: 1724 ave 1724 max 1724 min 684s Histogram: 1 0 0 0 0 0 0 0 0 0 684s Neighs: 21000 ave 21000 max 21000 min 684s Histogram: 1 0 0 0 0 0 0 0 0 0 684s 684s Total # of neighbors = 21000 684s Ave neighs/atom = 21 684s Neighbor list builds = 11 684s Dangerous builds = 0 684s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 684s using 1 OpenMP thread(s) per MPI task 684s Reading restart file ... 684s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 684s restoring atom style atomic from restart 689s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 689s 1 by 1 by 1 MPI processor grid 689s restoring pair style lj/cubic from restart 689s 1000 atoms 689s read_restart CPU = 0.000 seconds 689s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 689s Neighbor list info ... 689s update: every = 1 steps, delay = 0 steps, check = yes 689s max neighbors/atom: 2000, page size: 100000 689s master list distance cutoff = 1.7475372 689s ghost atom cutoff = 1.7475372 689s binsize = 0.87376862, bins = 8 12 12 689s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 689s (1) pair lj/cubic, perpetual 689s attributes: half, newton on 689s pair build: half/bin/atomonly/newton 689s stencil: half/bin/3d 689s bin: standard 689s Setting up Verlet run ... 689s Unit style : lj 689s Current step : 0 689s Time step : 0.001 689s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 689s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 689s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 689s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 689s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 689s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 689s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 689s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 689s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 689s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 689s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 689s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 689s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 689s Loop time of 4.93309 on 1 procs for 10000 steps with 1000 atoms 689s 689s Performance: 175143.609 tau/day, 2027.125 timesteps/s, 2.027 Matom-step/s 689s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 689s 689s MPI task timing breakdown: 689s Section | min time | avg time | max time |%varavg| %total 689s --------------------------------------------------------------- 689s Pair | 4.0209 | 4.0209 | 4.0209 | 0.0 | 81.51 689s Neigh | 0.086508 | 0.086508 | 0.086508 | 0.0 | 1.75 689s Comm | 0.098264 | 0.098264 | 0.098264 | 0.0 | 1.99 689s Output | 0.00069057 | 0.00069057 | 0.00069057 | 0.0 | 0.01 689s Modify | 0.64013 | 0.64013 | 0.64013 | 0.0 | 12.98 689s Other | | 0.08664 | | | 1.76 689s 689s Nlocal: 1000 ave 1000 max 1000 min 689s Histogram: 1 0 0 0 0 0 0 0 0 0 689s Nghost: 1724 ave 1724 max 1724 min 689s Histogram: 1 0 0 0 0 0 0 0 0 0 689s Neighs: 20654 ave 20654 max 20654 min 689s Histogram: 1 0 0 0 0 0 0 0 0 0 689s 689s Total # of neighbors = 20654 689s Ave neighs/atom = 20.654 689s Neighbor list builds = 94 689s Dangerous builds = 0 689s Total wall time: 0:00:15 689s run: OK 689s autopkgtest [02:22:14]: test hugo: -----------------------] 694s autopkgtest [02:22:19]: test hugo: - - - - - - - - - - results - - - - - - - - - - 694s hugo PASS 700s autopkgtest [02:22:25]: test command1: preparing testbed 749s autopkgtest [02:23:14]: testbed dpkg architecture: armhf 751s autopkgtest [02:23:16]: testbed apt version: 2.9.3 751s autopkgtest [02:23:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 770s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 771s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 771s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [57.0 kB] 771s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2568 B] 771s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [530 kB] 772s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [97.4 kB] 772s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [508 kB] 772s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1392 B] 772s Fetched 1272 kB in 5s (235 kB/s) 772s Reading package lists... 788s tee: /proc/self/fd/2: Permission denied 811s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 811s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 811s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 811s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 813s Reading package lists... 813s Reading package lists... 814s Building dependency tree... 814s Reading state information... 814s Calculating upgrade... 815s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 815s Reading package lists... 815s Building dependency tree... 815s Reading state information... 816s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 818s autopkgtest [02:24:23]: rebooting testbed after setup commands that affected boot 905s Reading package lists... 906s Building dependency tree... 906s Reading state information... 906s Starting pkgProblemResolver with broken count: 0 906s Starting 2 pkgProblemResolver with broken count: 0 906s Done 907s The following additional packages will be installed: 907s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 907s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libasan8 libatomic1 907s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 907s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 907s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 907s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 907s libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 907s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 907s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 907s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev libhwloc-plugins libhwloc15 907s libibverbs-dev libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 907s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 907s liblapack3 liblerc4 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 907s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 907s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 907s libpmix2t64 libproj25 libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 907s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 907s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 907s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 907s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 907s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 907s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 907s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 907s Suggested packages: 907s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 907s cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev glibc-doc manpages-dev 907s libfftw3-bin libfftw3-dev glew-utils libjs-jquery-ui-docs libtool-doc 907s openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc opencl-icd 907s gfortran | fortran-compiler 907s Recommended packages: 907s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 907s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 907s python3-mpi4py 908s The following NEW packages will be installed: 908s autoconf automake autopkgtest-satdep autotools-dev cpp-12 fontconfig-config 908s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 908s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 908s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 908s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7t64 libevent-dev 908s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 908s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 908s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 908s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 908s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev libhwloc-plugins libhwloc15 908s libibverbs-dev libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 908s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 908s liblapack3 liblerc4 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 908s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 908s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 908s libpmix2t64 libproj25 libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 908s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 908s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 908s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 908s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 908s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 908s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 908s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 908s 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. 908s Need to get 135 MB/135 MB of archives. 908s After this operation, 444 MB of additional disk space will be used. 908s Get:1 /tmp/autopkgtest.NzFM76/7-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 908s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf m4 armhf 1.4.19-4build1 [235 kB] 909s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf autoconf all 2.71-3 [339 kB] 909s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf autotools-dev all 20220109.1 [44.9 kB] 909s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB] 909s Get:6 http://ftpmaster.internal/ubuntu oracular/universe armhf gcc-12-base armhf 12.3.0-17ubuntu1 [46.3 kB] 909s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libisl23 armhf 0.26-3build1 [544 kB] 909s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB] 909s Get:9 http://ftpmaster.internal/ubuntu oracular/universe armhf cpp-12 armhf 12.3.0-17ubuntu1 [8159 kB] 910s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 910s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 910s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 910s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libcc1-0 armhf 14.1.0-1ubuntu1 [43.3 kB] 910s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB] 910s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf libatomic1 armhf 14.1.0-1ubuntu1 [7816 B] 910s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libasan8 armhf 14.1.0-1ubuntu1 [2913 kB] 911s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libubsan1 armhf 14.1.0-1ubuntu1 [1154 kB] 911s Get:18 http://ftpmaster.internal/ubuntu oracular/universe armhf libgcc-12-dev armhf 12.3.0-17ubuntu1 [855 kB] 911s Get:19 http://ftpmaster.internal/ubuntu oracular/universe armhf gcc-12 armhf 12.3.0-17ubuntu1 [16.2 MB] 912s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 912s Get:21 http://ftpmaster.internal/ubuntu oracular/universe armhf libgfortran-12-dev armhf 12.3.0-17ubuntu1 [350 kB] 912s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libc-dev-bin armhf 2.39-0ubuntu8.1 [19.1 kB] 912s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf linux-libc-dev armhf 6.8.0-31.31 [1557 kB] 912s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] 912s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 912s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libc6-dev armhf 2.39-0ubuntu8.1 [1351 kB] 912s Get:27 http://ftpmaster.internal/ubuntu oracular/universe armhf gfortran-12 armhf 12.3.0-17ubuntu1 [8571 kB] 912s Get:28 http://ftpmaster.internal/ubuntu oracular/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 912s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 912s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB] 912s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 912s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB] 912s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 912s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 912s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 912s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo2 armhf 1.18.0-3build1 [482 kB] 912s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate0 armhf 1.20-1 [38.3 kB] 912s Get:38 http://ftpmaster.internal/ubuntu oracular/universe armhf libdouble-conversion3 armhf 3.3.0-1build1 [38.6 kB] 912s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-amdgpu1 armhf 2.4.120-2build1 [18.6 kB] 912s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-nouveau2 armhf 2.4.120-2build1 [15.2 kB] 912s Get:41 http://ftpmaster.internal/ubuntu oracular/main armhf libdrm-radeon1 armhf 2.4.120-2build1 [18.2 kB] 912s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10 [127 kB] 912s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-extra-2.1-7t64 armhf 2.1.12-stable-10 [56.1 kB] 912s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-10 [7530 B] 912s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-openssl-2.1-7t64 armhf 2.1.12-stable-10 [12.9 kB] 912s Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-dev armhf 2.1.12-stable-10 [264 kB] 912s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf librdmacm1t64 armhf 50.0-2build2 [63.0 kB] 912s Get:48 http://ftpmaster.internal/ubuntu oracular/universe armhf libfabric1 armhf 1.17.0-3build2 [419 kB] 912s Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf libfftw3-double3 armhf 3.3.10-1ubuntu3 [369 kB] 912s Get:50 http://ftpmaster.internal/ubuntu oracular/main armhf libvulkan1 armhf 1.3.280.0-1 [121 kB] 912s Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf libglapi-mesa armhf 24.0.8-1ubuntu1 [48.0 kB] 912s Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libllvm17t64 armhf 1:17.0.6-12 [25.3 MB] 913s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 913s Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf libgl1-mesa-dri armhf 24.0.8-1ubuntu1 [7204 kB] 913s Get:55 http://ftpmaster.internal/ubuntu oracular/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 913s Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf libx11-xcb1 armhf 2:1.8.7-1build1 [7748 B] 913s Get:57 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B] 913s Get:58 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 913s Get:59 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 913s Get:60 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 913s Get:61 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 913s Get:62 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 913s Get:63 http://ftpmaster.internal/ubuntu oracular/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 913s Get:64 http://ftpmaster.internal/ubuntu oracular/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 913s Get:65 http://ftpmaster.internal/ubuntu oracular/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 913s Get:66 http://ftpmaster.internal/ubuntu oracular/main armhf libglx-mesa0 armhf 24.0.8-1ubuntu1 [132 kB] 913s Get:67 http://ftpmaster.internal/ubuntu oracular/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 913s Get:68 http://ftpmaster.internal/ubuntu oracular/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 913s Get:69 http://ftpmaster.internal/ubuntu oracular/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 913s Get:70 http://ftpmaster.internal/ubuntu oracular/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 913s Get:71 http://ftpmaster.internal/ubuntu oracular/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 913s Get:72 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu4 [1337 kB] 913s Get:73 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu4 [54.8 kB] 913s Get:74 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc15 armhf 2.10.0-1build1 [146 kB] 913s Get:75 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 913s Get:76 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 913s Get:77 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 913s Get:78 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 913s Get:79 http://ftpmaster.internal/ubuntu oracular/main armhf libjsoncpp25 armhf 1.9.5-6build1 [75.3 kB] 913s Get:80 http://ftpmaster.internal/ubuntu oracular/universe armhf libkim-api2 armhf 2.3.0-1 [536 kB] 913s Get:81 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 913s Get:82 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf libnetcdf19t64 armhf 1:4.9.2-6 [422 kB] 913s Get:83 http://ftpmaster.internal/ubuntu oracular/universe armhf libmunge2 armhf 0.5.15-4build1 [17.1 kB] 913s Get:84 http://ftpmaster.internal/ubuntu oracular/main armhf libpciaccess0 armhf 0.17-3build1 [16.3 kB] 913s Get:85 http://ftpmaster.internal/ubuntu oracular/main armhf libxnvctrl0 armhf 510.47.03-0ubuntu4 [11.6 kB] 913s Get:86 http://ftpmaster.internal/ubuntu oracular/universe armhf ocl-icd-libopencl1 armhf 2.3.2-1build1 [34.5 kB] 913s Get:87 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc-plugins armhf 2.10.0-1build1 [13.7 kB] 913s Get:88 http://ftpmaster.internal/ubuntu oracular/universe armhf libpmix2t64 armhf 5.0.1-4.1build1 [616 kB] 913s Get:89 http://ftpmaster.internal/ubuntu oracular/universe armhf libopenmpi3t64 armhf 4.1.6-7ubuntu2 [2041 kB] 913s Get:90 http://ftpmaster.internal/ubuntu oracular/main armhf libpython3.12t64 armhf 3.12.3-1 [2058 kB] 913s Get:91 http://ftpmaster.internal/ubuntu oracular/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 913s Get:92 http://ftpmaster.internal/ubuntu oracular/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 913s Get:93 http://ftpmaster.internal/ubuntu oracular/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 913s Get:94 http://ftpmaster.internal/ubuntu oracular/universe armhf proj-data all 9.4.0-1build2 [7885 kB] 914s Get:95 http://ftpmaster.internal/ubuntu oracular/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 914s Get:96 http://ftpmaster.internal/ubuntu oracular/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 914s Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 914s Get:98 http://ftpmaster.internal/ubuntu oracular/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 914s Get:99 http://ftpmaster.internal/ubuntu oracular/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu2 [178 kB] 914s Get:100 http://ftpmaster.internal/ubuntu oracular/universe armhf libproj25 armhf 9.4.0-1build2 [1281 kB] 914s Get:101 http://ftpmaster.internal/ubuntu oracular/universe armhf libtbbmalloc2 armhf 2021.11.0-2ubuntu2 [52.3 kB] 914s Get:102 http://ftpmaster.internal/ubuntu oracular/universe armhf libtbbbind-2-5 armhf 2021.11.0-2ubuntu2 [14.6 kB] 914s Get:103 http://ftpmaster.internal/ubuntu oracular/universe armhf libtbb12 armhf 2021.11.0-2ubuntu2 [88.0 kB] 914s Get:104 http://ftpmaster.internal/ubuntu oracular/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB] 914s Get:105 http://ftpmaster.internal/ubuntu oracular/main armhf libtheora0 armhf 1.1.1+dfsg.1-16.1build3 [142 kB] 914s Get:106 http://ftpmaster.internal/ubuntu oracular/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 914s Get:107 http://ftpmaster.internal/ubuntu oracular/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 914s Get:108 http://ftpmaster.internal/ubuntu oracular/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 914s Get:109 http://ftpmaster.internal/ubuntu oracular/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB] 914s Get:110 http://ftpmaster.internal/ubuntu oracular/universe armhf libvtk9.1t64 armhf 9.1.0+really9.1.0+dfsg2-8 [17.7 MB] 915s Get:111 http://ftpmaster.internal/ubuntu oracular/universe armhf liblammps0t64 armhf 20240207+dfsg-1.1build3 [6812 kB] 915s Get:112 http://ftpmaster.internal/ubuntu oracular/universe armhf openmpi-common all 4.1.6-7ubuntu2 [170 kB] 915s Get:113 http://ftpmaster.internal/ubuntu oracular/main armhf libnl-3-dev armhf 3.7.0-0.3build1 [94.5 kB] 915s Get:114 http://ftpmaster.internal/ubuntu oracular/main armhf libnl-route-3-dev armhf 3.7.0-0.3build1 [196 kB] 915s Get:115 http://ftpmaster.internal/ubuntu oracular/main armhf libibverbs-dev armhf 50.0-2build2 [201 kB] 915s Get:116 http://ftpmaster.internal/ubuntu oracular/main armhf libnuma-dev armhf 2.0.18-1build1 [35.0 kB] 915s Get:117 http://ftpmaster.internal/ubuntu oracular/main armhf libltdl7 armhf 2.4.7-7build1 [37.6 kB] 915s Get:118 http://ftpmaster.internal/ubuntu oracular/main armhf libltdl-dev armhf 2.4.7-7build1 [166 kB] 915s Get:119 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc-dev armhf 2.10.0-1build1 [242 kB] 915s Get:120 http://ftpmaster.internal/ubuntu oracular/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu2 [880 kB] 915s Get:121 http://ftpmaster.internal/ubuntu oracular/universe armhf libpmix-dev armhf 5.0.1-4.1build1 [3936 kB] 915s Get:122 http://ftpmaster.internal/ubuntu oracular/universe armhf openmpi-bin armhf 4.1.6-7ubuntu2 [83.2 kB] 915s Get:123 http://ftpmaster.internal/ubuntu oracular/universe armhf libopenmpi-dev armhf 4.1.6-7ubuntu2 [816 kB] 915s Get:124 http://ftpmaster.internal/ubuntu oracular/universe armhf mpi-default-dev armhf 1.15build1 [3154 B] 915s Get:125 http://ftpmaster.internal/ubuntu oracular/universe armhf liblammps-dev armhf 20240207+dfsg-1.1build3 [113 kB] 915s Get:126 http://ftpmaster.internal/ubuntu oracular/universe armhf mpi-default-bin armhf 1.15build1 [2376 B] 915s Get:127 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-lammps armhf 20240207+dfsg-1.1build3 [70.4 kB] 919s Fetched 135 MB in 8s (17.6 MB/s) 920s Selecting previously unselected package m4. 920s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58333 files and directories currently installed.) 920s Preparing to unpack .../000-m4_1.4.19-4build1_armhf.deb ... 920s Unpacking m4 (1.4.19-4build1) ... 920s Selecting previously unselected package autoconf. 921s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 921s Unpacking autoconf (2.71-3) ... 921s Selecting previously unselected package autotools-dev. 922s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 922s Unpacking autotools-dev (20220109.1) ... 922s Selecting previously unselected package automake. 922s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 922s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 922s Selecting previously unselected package gcc-12-base:armhf. 923s Preparing to unpack .../004-gcc-12-base_12.3.0-17ubuntu1_armhf.deb ... 923s Unpacking gcc-12-base:armhf (12.3.0-17ubuntu1) ... 923s Selecting previously unselected package libisl23:armhf. 923s Preparing to unpack .../005-libisl23_0.26-3build1_armhf.deb ... 923s Unpacking libisl23:armhf (0.26-3build1) ... 923s Selecting previously unselected package libmpc3:armhf. 924s Preparing to unpack .../006-libmpc3_1.3.1-1build1_armhf.deb ... 924s Unpacking libmpc3:armhf (1.3.1-1build1) ... 924s Selecting previously unselected package cpp-12. 924s Preparing to unpack .../007-cpp-12_12.3.0-17ubuntu1_armhf.deb ... 924s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 924s Selecting previously unselected package fonts-dejavu-mono. 925s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 925s Unpacking fonts-dejavu-mono (2.37-8) ... 925s Selecting previously unselected package fonts-dejavu-core. 926s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 926s Unpacking fonts-dejavu-core (2.37-8) ... 926s Selecting previously unselected package fontconfig-config. 926s Preparing to unpack .../010-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 927s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 928s Selecting previously unselected package libcc1-0:armhf. 928s Preparing to unpack .../011-libcc1-0_14.1.0-1ubuntu1_armhf.deb ... 928s Unpacking libcc1-0:armhf (14.1.0-1ubuntu1) ... 928s Selecting previously unselected package libgomp1:armhf. 928s Preparing to unpack .../012-libgomp1_14.1.0-1ubuntu1_armhf.deb ... 928s Unpacking libgomp1:armhf (14.1.0-1ubuntu1) ... 928s Selecting previously unselected package libatomic1:armhf. 928s Preparing to unpack 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Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 929s Selecting previously unselected package libgfortran-12-dev:armhf. 929s Preparing to unpack .../019-libgfortran-12-dev_12.3.0-17ubuntu1_armhf.deb ... 929s Unpacking libgfortran-12-dev:armhf (12.3.0-17ubuntu1) ... 929s Selecting previously unselected package libc-dev-bin. 929s Preparing to unpack .../020-libc-dev-bin_2.39-0ubuntu8.1_armhf.deb ... 929s Unpacking libc-dev-bin (2.39-0ubuntu8.1) ... 929s Selecting previously unselected package linux-libc-dev:armhf. 929s Preparing to unpack .../021-linux-libc-dev_6.8.0-31.31_armhf.deb ... 929s Unpacking linux-libc-dev:armhf (6.8.0-31.31) ... 930s Selecting previously unselected package libcrypt-dev:armhf. 930s Preparing to unpack .../022-libcrypt-dev_1%3a4.4.36-4build1_armhf.deb ... 930s Unpacking libcrypt-dev:armhf (1:4.4.36-4build1) ... 930s Selecting previously unselected package rpcsvc-proto. 930s Preparing to unpack .../023-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 930s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 930s Selecting previously unselected package libc6-dev:armhf. 930s Preparing to unpack .../024-libc6-dev_2.39-0ubuntu8.1_armhf.deb ... 930s Unpacking libc6-dev:armhf (2.39-0ubuntu8.1) ... 930s Selecting previously unselected package gfortran-12. 930s Preparing to unpack .../025-gfortran-12_12.3.0-17ubuntu1_armhf.deb ... 930s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 930s Selecting previously unselected package libaec0:armhf. 930s Preparing to unpack .../026-libaec0_1.1.3-1_armhf.deb ... 930s Unpacking libaec0:armhf (1.1.3-1) ... 930s Selecting previously unselected package libblas3:armhf. 930s Preparing to unpack .../027-libblas3_3.12.0-3build1_armhf.deb ... 930s Unpacking libblas3:armhf (3.12.0-3build1) ... 930s Selecting previously unselected package libfreetype6:armhf. 930s Preparing to unpack .../028-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ... 930s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ... 930s Selecting previously unselected package libfontconfig1:armhf. 930s Preparing to unpack .../029-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 930s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 930s Selecting previously unselected package libpixman-1-0:armhf. 930s Preparing to unpack .../030-libpixman-1-0_0.42.2-1build1_armhf.deb ... 930s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ... 930s Selecting previously unselected package libxcb-render0:armhf. 930s Preparing to unpack .../031-libxcb-render0_1.17.0-2_armhf.deb ... 930s Unpacking libxcb-render0:armhf (1.17.0-2) ... 930s Selecting previously unselected package libxcb-shm0:armhf. 930s Preparing to unpack .../032-libxcb-shm0_1.17.0-2_armhf.deb ... 930s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 930s Selecting previously unselected package libxrender1:armhf. 931s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 931s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 931s Selecting previously unselected package libcairo2:armhf. 931s Preparing to unpack .../034-libcairo2_1.18.0-3build1_armhf.deb ... 931s Unpacking libcairo2:armhf (1.18.0-3build1) ... 931s Selecting previously unselected package libdeflate0:armhf. 931s Preparing to unpack .../035-libdeflate0_1.20-1_armhf.deb ... 931s Unpacking libdeflate0:armhf (1.20-1) ... 931s Selecting previously unselected package libdouble-conversion3:armhf. 931s Preparing to unpack .../036-libdouble-conversion3_3.3.0-1build1_armhf.deb ... 931s Unpacking libdouble-conversion3:armhf (3.3.0-1build1) ... 931s Selecting previously unselected package libdrm-amdgpu1:armhf. 931s Preparing to unpack .../037-libdrm-amdgpu1_2.4.120-2build1_armhf.deb ... 931s Unpacking libdrm-amdgpu1:armhf (2.4.120-2build1) ... 931s Selecting previously unselected package libdrm-nouveau2:armhf. 931s Preparing to unpack .../038-libdrm-nouveau2_2.4.120-2build1_armhf.deb ... 931s Unpacking libdrm-nouveau2:armhf (2.4.120-2build1) ... 931s Selecting previously unselected package libdrm-radeon1:armhf. 931s Preparing to unpack .../039-libdrm-radeon1_2.4.120-2build1_armhf.deb ... 931s Unpacking libdrm-radeon1:armhf (2.4.120-2build1) ... 931s Selecting previously unselected package libevent-2.1-7t64:armhf. 931s Preparing to unpack .../040-libevent-2.1-7t64_2.1.12-stable-10_armhf.deb ... 931s Unpacking libevent-2.1-7t64:armhf (2.1.12-stable-10) ... 931s Selecting previously unselected package libevent-extra-2.1-7t64:armhf. 931s Preparing to unpack .../041-libevent-extra-2.1-7t64_2.1.12-stable-10_armhf.deb ... 931s Unpacking libevent-extra-2.1-7t64:armhf (2.1.12-stable-10) ... 931s Selecting previously unselected package libevent-pthreads-2.1-7t64:armhf. 931s Preparing to unpack .../042-libevent-pthreads-2.1-7t64_2.1.12-stable-10_armhf.deb ... 931s Unpacking libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-10) ... 931s Selecting previously unselected package libevent-openssl-2.1-7t64:armhf. 931s Preparing to unpack .../043-libevent-openssl-2.1-7t64_2.1.12-stable-10_armhf.deb ... 931s Unpacking libevent-openssl-2.1-7t64:armhf (2.1.12-stable-10) ... 931s Selecting previously unselected package libevent-dev. 931s Preparing to unpack .../044-libevent-dev_2.1.12-stable-10_armhf.deb ... 931s Unpacking libevent-dev (2.1.12-stable-10) ... 931s Selecting previously unselected package librdmacm1t64:armhf. 931s Preparing to unpack .../045-librdmacm1t64_50.0-2build2_armhf.deb ... 931s Unpacking librdmacm1t64:armhf (50.0-2build2) ... 931s Selecting previously unselected package libfabric1:armhf. 931s Preparing to unpack .../046-libfabric1_1.17.0-3build2_armhf.deb ... 931s Unpacking libfabric1:armhf (1.17.0-3build2) ... 931s Selecting previously unselected package libfftw3-double3:armhf. 931s Preparing to unpack .../047-libfftw3-double3_3.3.10-1ubuntu3_armhf.deb ... 931s Unpacking libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 931s Selecting previously unselected package libvulkan1:armhf. 931s Preparing to unpack .../048-libvulkan1_1.3.280.0-1_armhf.deb ... 931s Unpacking libvulkan1:armhf (1.3.280.0-1) ... 931s Selecting previously unselected package libglapi-mesa:armhf. 931s Preparing to unpack .../049-libglapi-mesa_24.0.8-1ubuntu1_armhf.deb ... 931s Unpacking libglapi-mesa:armhf (24.0.8-1ubuntu1) ... 931s Selecting previously unselected package libllvm17t64:armhf. 931s Preparing to unpack .../050-libllvm17t64_1%3a17.0.6-12_armhf.deb ... 931s Unpacking libllvm17t64:armhf (1:17.0.6-12) ... 932s Selecting previously unselected package libxcb-dri3-0:armhf. 932s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_armhf.deb ... 932s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 932s Selecting previously unselected package libgl1-mesa-dri:armhf. 932s Preparing to unpack .../052-libgl1-mesa-dri_24.0.8-1ubuntu1_armhf.deb ... 932s Unpacking libgl1-mesa-dri:armhf (24.0.8-1ubuntu1) ... 933s Selecting previously unselected package libglvnd0:armhf. 933s Preparing to unpack .../053-libglvnd0_1.7.0-1build1_armhf.deb ... 933s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 933s Selecting previously unselected package libx11-xcb1:armhf. 933s Preparing to unpack .../054-libx11-xcb1_2%3a1.8.7-1build1_armhf.deb ... 933s Unpacking libx11-xcb1:armhf (2:1.8.7-1build1) ... 933s Selecting previously unselected package libxcb-dri2-0:armhf. 933s Preparing to unpack .../055-libxcb-dri2-0_1.17.0-2_armhf.deb ... 933s Unpacking libxcb-dri2-0:armhf (1.17.0-2) ... 933s Selecting previously unselected package libxcb-glx0:armhf. 933s Preparing to unpack .../056-libxcb-glx0_1.17.0-2_armhf.deb ... 933s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 933s Selecting previously unselected package libxcb-present0:armhf. 933s Preparing to unpack .../057-libxcb-present0_1.17.0-2_armhf.deb ... 933s Unpacking libxcb-present0:armhf (1.17.0-2) ... 933s Selecting previously unselected package libxcb-randr0:armhf. 933s Preparing to unpack .../058-libxcb-randr0_1.17.0-2_armhf.deb ... 933s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 933s Selecting previously unselected package libxcb-sync1:armhf. 933s Preparing to unpack .../059-libxcb-sync1_1.17.0-2_armhf.deb ... 933s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 933s Selecting previously unselected package libxcb-xfixes0:armhf. 933s Preparing to unpack .../060-libxcb-xfixes0_1.17.0-2_armhf.deb ... 933s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 933s Selecting previously unselected package libxfixes3:armhf. 933s Preparing to unpack .../061-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 933s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 933s Selecting previously unselected package libxshmfence1:armhf. 933s Preparing to unpack .../062-libxshmfence1_1.3-1build5_armhf.deb ... 933s Unpacking libxshmfence1:armhf (1.3-1build5) ... 934s Selecting previously unselected package libxxf86vm1:armhf. 934s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 934s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 934s Selecting previously unselected package libglx-mesa0:armhf. 934s Preparing to unpack .../064-libglx-mesa0_24.0.8-1ubuntu1_armhf.deb ... 934s Unpacking libglx-mesa0:armhf (24.0.8-1ubuntu1) ... 934s Selecting previously unselected package libglx0:armhf. 934s Preparing to unpack .../065-libglx0_1.7.0-1build1_armhf.deb ... 934s Unpacking libglx0:armhf (1.7.0-1build1) ... 934s Selecting previously unselected package libgl1:armhf. 934s Preparing to unpack .../066-libgl1_1.7.0-1build1_armhf.deb ... 934s Unpacking libgl1:armhf (1.7.0-1build1) ... 934s Selecting previously unselected package libgl2ps1.4. 934s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 934s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 934s Selecting previously unselected package libglew2.2:armhf. 935s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_armhf.deb ... 935s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 935s Selecting previously unselected package libsz2:armhf. 935s Preparing to unpack .../069-libsz2_1.1.3-1_armhf.deb ... 935s Unpacking libsz2:armhf (1.1.3-1) ... 935s Selecting previously unselected package libhdf5-103-1t64:armhf. 935s Preparing to unpack .../070-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 935s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ... 935s Selecting previously unselected package libhdf5-hl-100t64:armhf. 935s Preparing to unpack .../071-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 935s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ... 935s Selecting previously unselected package libhwloc15:armhf. 935s Preparing to unpack .../072-libhwloc15_2.10.0-1build1_armhf.deb ... 935s Unpacking libhwloc15:armhf (2.10.0-1build1) ... 935s Selecting previously unselected package libjpeg-turbo8:armhf. 935s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 935s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 935s Selecting previously unselected package libjpeg8:armhf. 935s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_armhf.deb ... 935s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 935s Selecting previously unselected package libjs-jquery. 935s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 935s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 935s Selecting previously unselected package libjs-jquery-ui. 936s Preparing to unpack .../076-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 936s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 936s Selecting previously unselected package libjsoncpp25:armhf. 936s Preparing to unpack .../077-libjsoncpp25_1.9.5-6build1_armhf.deb ... 936s Unpacking libjsoncpp25:armhf (1.9.5-6build1) ... 936s Selecting previously unselected package libkim-api2:armhf. 936s Preparing to unpack .../078-libkim-api2_2.3.0-1_armhf.deb ... 936s Unpacking libkim-api2:armhf (2.3.0-1) ... 936s Selecting previously unselected package liblapack3:armhf. 936s Preparing to unpack .../079-liblapack3_3.12.0-3build1_armhf.deb ... 936s Unpacking liblapack3:armhf (3.12.0-3build1) ... 937s Selecting previously unselected package libnetcdf19t64:armhf. 937s Preparing to unpack .../080-libnetcdf19t64_1%3a4.9.2-6_armhf.deb ... 937s Unpacking libnetcdf19t64:armhf (1:4.9.2-6) ... 937s Selecting previously unselected package libmunge2:armhf. 937s Preparing to unpack .../081-libmunge2_0.5.15-4build1_armhf.deb ... 937s Unpacking libmunge2:armhf (0.5.15-4build1) ... 937s Selecting previously unselected package libpciaccess0:armhf. 937s Preparing to unpack .../082-libpciaccess0_0.17-3build1_armhf.deb ... 937s Unpacking libpciaccess0:armhf (0.17-3build1) ... 937s Selecting previously unselected package libxnvctrl0:armhf. 937s Preparing to unpack .../083-libxnvctrl0_510.47.03-0ubuntu4_armhf.deb ... 937s Unpacking libxnvctrl0:armhf (510.47.03-0ubuntu4) ... 937s Selecting previously unselected package ocl-icd-libopencl1:armhf. 937s Preparing to unpack .../084-ocl-icd-libopencl1_2.3.2-1build1_armhf.deb ... 937s Unpacking ocl-icd-libopencl1:armhf (2.3.2-1build1) ... 937s Selecting previously unselected package libhwloc-plugins:armhf. 937s Preparing to unpack .../085-libhwloc-plugins_2.10.0-1build1_armhf.deb ... 937s Unpacking libhwloc-plugins:armhf (2.10.0-1build1) ... 937s Selecting previously unselected package libpmix2t64:armhf. 937s Preparing to unpack .../086-libpmix2t64_5.0.1-4.1build1_armhf.deb ... 937s Unpacking libpmix2t64:armhf (5.0.1-4.1build1) ... 937s Selecting previously unselected package libopenmpi3t64:armhf. 937s Preparing to unpack .../087-libopenmpi3t64_4.1.6-7ubuntu2_armhf.deb ... 937s Unpacking libopenmpi3t64:armhf (4.1.6-7ubuntu2) ... 937s Selecting previously unselected package libpython3.12t64:armhf. 937s Preparing to unpack .../088-libpython3.12t64_3.12.3-1_armhf.deb ... 937s Unpacking libpython3.12t64:armhf (3.12.3-1) ... 938s Selecting previously unselected package libvoro++1. 938s Preparing to unpack .../089-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 938s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 938s Selecting previously unselected package libogg0:armhf. 938s Preparing to unpack .../090-libogg0_1.3.5-3build1_armhf.deb ... 938s Unpacking libogg0:armhf (1.3.5-3build1) ... 938s Selecting previously unselected package libopengl0:armhf. 938s Preparing to unpack .../091-libopengl0_1.7.0-1build1_armhf.deb ... 938s Unpacking libopengl0:armhf (1.7.0-1build1) ... 938s Selecting previously unselected package proj-data. 938s Preparing to unpack .../092-proj-data_9.4.0-1build2_all.deb ... 938s Unpacking proj-data (9.4.0-1build2) ... 938s Selecting previously unselected package libjbig0:armhf. 938s Preparing to unpack .../093-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 938s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 938s Selecting previously unselected package liblerc4:armhf. 938s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 938s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 938s Selecting previously unselected package libsharpyuv0:armhf. 938s Preparing to unpack .../095-libsharpyuv0_1.4.0-0.1_armhf.deb ... 938s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 938s Selecting previously unselected package libwebp7:armhf. 938s Preparing to unpack .../096-libwebp7_1.4.0-0.1_armhf.deb ... 938s Unpacking libwebp7:armhf (1.4.0-0.1) ... 938s Selecting previously unselected package libtiff6:armhf. 938s Preparing to unpack .../097-libtiff6_4.5.1+git230720-4ubuntu2_armhf.deb ... 938s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... 938s Selecting previously unselected package libproj25:armhf. 939s Preparing to unpack .../098-libproj25_9.4.0-1build2_armhf.deb ... 939s Unpacking libproj25:armhf (9.4.0-1build2) ... 939s Selecting previously unselected package libtbbmalloc2:armhf. 939s Preparing to unpack .../099-libtbbmalloc2_2021.11.0-2ubuntu2_armhf.deb ... 939s Unpacking libtbbmalloc2:armhf (2021.11.0-2ubuntu2) ... 939s Selecting previously unselected package libtbbbind-2-5:armhf. 939s Preparing to unpack .../100-libtbbbind-2-5_2021.11.0-2ubuntu2_armhf.deb ... 939s Unpacking libtbbbind-2-5:armhf (2021.11.0-2ubuntu2) ... 939s Selecting previously unselected package libtbb12:armhf. 939s Preparing to unpack .../101-libtbb12_2021.11.0-2ubuntu2_armhf.deb ... 939s Unpacking libtbb12:armhf (2021.11.0-2ubuntu2) ... 939s Selecting previously unselected package libtcl8.6:armhf. 939s Preparing to unpack .../102-libtcl8.6_8.6.14+dfsg-1build1_armhf.deb ... 939s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 939s Selecting previously unselected package libtheora0:armhf. 939s Preparing to unpack .../103-libtheora0_1.1.1+dfsg.1-16.1build3_armhf.deb ... 939s Unpacking libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 939s Selecting previously unselected package libxft2:armhf. 939s Preparing to unpack .../104-libxft2_2.3.6-1build1_armhf.deb ... 939s Unpacking libxft2:armhf (2.3.6-1build1) ... 939s Selecting previously unselected package x11-common. 939s Preparing to unpack .../105-x11-common_1%3a7.7+23ubuntu3_all.deb ... 939s Unpacking x11-common (1:7.7+23ubuntu3) ... 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for install-info (7.1-3build2) ... 948s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 972s (Reading database ... 65116 files and directories currently installed.) 972s Removing autopkgtest-satdep (0) ... 997s autopkgtest [02:27:22]: test command1: cd python/examples; python3 demo.py 997s autopkgtest [02:27:22]: test command1: [----------------------- 1006s LAMMPS (7 Feb 2024 - Update 1) 1006s 1006s Python output: 1006s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 1006s Temperature from compute = 0.7683848148006243 1006s Energy from equal-style variable = -5.774392400140558 1006s Velocity component from atom-style variable = -0.16696430269966717 1006s Volume from get_thermo = 4738.213693437576 1006s Natoms from get_natoms = 4000 1006s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 1006s Changed x[0][0] via scatter_atoms = 17.651271530416228 1007s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1007s using 1 OpenMP thread(s) per MPI task 1007s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 1007s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1007s 1 by 1 by 1 MPI processor grid 1007s Created 4000 atoms 1007s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1007s create_atoms CPU = 0.001 seconds 1007s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1007s Neighbor list info ... 1007s update: every = 20 steps, delay = 0 steps, check = no 1007s max neighbors/atom: 2000, page size: 100000 1007s master list distance cutoff = 2.8 1007s ghost atom cutoff = 2.8 1007s binsize = 1.4, bins = 12 12 12 1007s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1007s (1) pair lj/cut, perpetual 1007s attributes: half, newton on 1007s pair build: half/bin/atomonly/newton 1007s stencil: half/bin/3d 1007s bin: standard 1007s Setting up Verlet run ... 1007s Unit style : lj 1007s Current step : 0 1007s Time step : 0.005 1007s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes 1007s Step Temp E_pair E_mol TotEng Press 1007s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 1007s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 1007s Loop time of 0.254419 on 1 procs for 100 steps with 4000 atoms 1007s 1007s Performance: 169798.355 tau/day, 393.052 timesteps/s, 1.572 Matom-step/s 1007s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 1007s 1007s MPI task timing breakdown: 1007s Section | min time | avg time | max time |%varavg| %total 1007s --------------------------------------------------------------- 1007s Pair | 0.2128 | 0.2128 | 0.2128 | 0.0 | 83.64 1007s Neigh | 0.029905 | 0.029905 | 0.029905 | 0.0 | 11.75 1007s Comm | 0.0057158 | 0.0057158 | 0.0057158 | 0.0 | 2.25 1007s Output | 4.4521e-05 | 4.4521e-05 | 4.4521e-05 | 0.0 | 0.02 1007s Modify | 0.0040042 | 0.0040042 | 0.0040042 | 0.0 | 1.57 1007s Other | | 0.001951 | | | 0.77 1007s 1007s Nlocal: 4000 ave 4000 max 4000 min 1007s Histogram: 1 0 0 0 0 0 0 0 0 0 1007s Nghost: 5758 ave 5758 max 5758 min 1007s Histogram: 1 0 0 0 0 0 0 0 0 0 1007s Neighs: 150488 ave 150488 max 150488 min 1007s Histogram: 1 0 0 0 0 0 0 0 0 0 1007s 1007s Total # of neighbors = 150488 1007s Ave neighs/atom = 37.622 1007s Neighbor list builds = 5 1007s Dangerous builds not checked 1007s Total wall time: 0:00:00 1007s autopkgtest [02:27:32]: test command1: -----------------------] 1011s autopkgtest [02:27:36]: test command1: - - - - - - - - - - results - - - - - - - - - - 1011s command1 PASS 1015s autopkgtest [02:27:40]: @@@@@@@@@@@@@@@@@@@@ summary 1015s crack PASS 1015s dipole PASS 1015s ellipse PASS 1015s flow PASS 1015s friction PASS 1015s hugo PASS 1015s command1 PASS