0s autopkgtest [07:54:03]: starting date and time: 2024-07-26 07:54:03+0000 0s autopkgtest [07:54:03]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [07:54:03]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.oky_1pz0/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+ --apt-upgrade cct --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ncbi-blast+/2.16.0+ds-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-58.secgroup --name adt-oracular-i386-cct-20240726-075402-juju-7f2275-prod-proposed-migration-environment-3-8600de75-9d0b-4825-a27a-af793db07399 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 76s autopkgtest [07:55:19]: testbed dpkg architecture: amd64 76s autopkgtest [07:55:19]: testbed apt version: 2.9.6 76s autopkgtest [07:55:19]: test architecture: i386 76s autopkgtest [07:55:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 76s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 76s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.4 kB] 76s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 76s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [411 kB] 76s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [92.8 kB] 76s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [50.7 kB] 76s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2116 B] 76s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 76s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 76s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 76s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [476 kB] 76s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [275 kB] 76s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9900 B] 76s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [8792 B] 76s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 76s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 77s Fetched 1558 kB in 0s (4772 kB/s) 77s Reading package lists... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Calculating upgrade... 80s The following packages will be upgraded: 80s liblz4-1 mawk 80s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 190 kB of archives. 80s After this operation, 4096 B disk space will be freed. 80s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 liblz4-1 amd64 1.9.4-3 [63.1 kB] 80s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240622-2 [127 kB] 80s Fetched 190 kB in 0s (4567 kB/s) 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 81s Preparing to unpack .../liblz4-1_1.9.4-3_amd64.deb ... 81s Unpacking liblz4-1:amd64 (1.9.4-3) over (1.9.4-2) ... 81s Setting up liblz4-1:amd64 (1.9.4-3) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 81s Preparing to unpack .../mawk_1.3.4.20240622-2_amd64.deb ... 81s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 81s Setting up mawk (1.3.4.20240622-2) ... 81s Processing triggers for man-db (2.12.1-2) ... 81s Processing triggers for libc-bin (2.39-0ubuntu9) ... 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 82s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 83s Reading package lists... 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Calculating upgrade... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s autopkgtest [07:55:29]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 86s autopkgtest [07:55:29]: @@@@@@@@@@@@@@@@@@@@ apt-source cct 88s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (dsc) [1997 B] 88s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (tar) [81.7 MB] 88s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cct 1:1.0.3-1 (diff) [11.7 kB] 89s gpgv: Signature made Sun Jan 16 15:11:18 2022 UTC 89s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 89s gpgv: issuer "tille@debian.org" 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./cct_1.0.3-1.dsc: no acceptable signature found 92s autopkgtest [07:55:35]: testing package cct version 1:1.0.3-1 92s autopkgtest [07:55:35]: build not needed 94s autopkgtest [07:55:37]: test run-unit-test: preparing testbed 97s Note, using file '/tmp/autopkgtest.TNw7D7/1-autopkgtest-satdep.dsc' to get the build dependencies 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s Starting pkgProblemResolver with broken count: 0 98s Starting 2 pkgProblemResolver with broken count: 0 98s Done 98s The following NEW packages will be installed: 98s adwaita-icon-theme at-spi2-common bioperl build-essential 98s ca-certificates-java cct cct-examples cgview cpp cpp-14 98s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dconf-gsettings-backend 98s dconf-service default-jre default-jre-headless fontconfig g++ g++-14 98s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 98s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gtk-update-icon-cache 98s hicolor-icon-theme humanity-icon-theme imagemagick imagemagick-6-common 98s imagemagick-6.q16 java-common java-wrappers libalgorithm-diff-perl 98s libapache-pom-java libasan8 libasound2-data libasound2t64 98s libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 98s libavahi-client3 libavahi-common-data libavahi-common3 libbatik-java 98s libbio-perl-perl libcairo-gobject2 libcairo2 libcapture-tiny-perl libcc1-0 98s libclass-data-inheritable-perl libclone-perl libcolord2 libcommons-io-java 98s libcommons-lang-java libcommons-logging-java libcommons-parent-java 98s libcups2t64 libdata-stag-perl libdatrie1 libdconf1 libdevel-stacktrace-perl 98s libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 98s libencode-locale-perl libepoxy0 liberror-perl libexception-class-perl 98s libfftw3-double3 libfile-listing-perl libgcc-14-dev libgdk-pixbuf-2.0-0 98s libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa 98s libglvnd0 libglx-mesa0 libglx0 libgtk-3-0t64 libgtk-3-common 98s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 98s libhttp-cookies-perl libhttp-date-perl libhttp-message-perl 98s libhttp-negotiate-perl libhwasan0 libio-html-perl libio-socket-ssl-perl 98s libio-string-perl libisl23 libitm1 libjargs-java libjaxp1.3-java liblcms2-2 98s libllvm17t64 liblqr-1-0 liblsan0 libltdl7 liblwp-mediatypes-perl 98s liblwp-protocol-https-perl libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 98s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmpc3 libnet-http-perl 98s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 98s libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpixman-1-0 libquadmath0 98s libraw23t64 libstdc++-14-dev libsub-uplevel-perl libtest-deep-perl 98s libtest-differences-perl libtest-exception-perl libtest-most-perl 98s libtest-warn-perl libtext-diff-perl libthai-data libthai0 libtie-ixhash-perl 98s libtimedate-perl libtry-tiny-perl libtsan2 libubsan1 liburi-perl libvulkan1 98s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebpdemux2 98s libwebpmux3 libwww-perl libwww-robotrules-perl libx11-xcb1 libxcb-dri2-0 98s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 98s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 98s libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 98s libxml-commons-external-java libxml-commons-resolver1.1-java 98s libxmlgraphics-commons-java libxrandr2 libxrender1 libxshmfence1 libxtst6 98s libxxf86vm1 ncbi-blast+ ncbi-blast+-legacy ncbi-data openjdk-21-jre 98s openjdk-21-jre-headless perl-openssl-defaults ubuntu-mono unzip x11-common 98s 0 upgraded, 182 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 276 MB of archives. 98s After this operation, 930 MB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu3 [838 kB] 99s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB] 99s Get:3 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblqr-1-0 amd64 0.4.2-2.1build2 [28.5 kB] 99s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] 99s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB] 99s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libraw23t64 amd64 0.21.2-2.1build1 [378 kB] 99s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 99s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 99s Get:9 http://ftpmaster.internal/ubuntu oracular/universe amd64 imagemagick-6-common all 8:6.9.13.12+dfsg1-1 [69.5 kB] 99s Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmagickcore-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [1821 kB] 99s Get:11 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmagickwand-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [316 kB] 99s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B] 99s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1 [147 kB] 99s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 gtk-update-icon-cache amd64 3.24.43-1ubuntu1 [51.9 kB] 99s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 hicolor-icon-theme all 0.18-1 [13.5 kB] 99s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 humanity-icon-theme all 0.6.16 [1282 kB] 99s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 99s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 adwaita-icon-theme all 46.0-1 [723 kB] 99s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 at-spi2-common all 2.52.0-1build1 [8674 B] 99s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 99s Get:21 http://ftpmaster.internal/ubuntu oracular/universe amd64 libdata-stag-perl all 0.14-3 [372 kB] 99s Get:22 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbio-perl-perl all 1.7.8-1 [2580 kB] 99s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libclass-data-inheritable-perl all 0.08-3 [8084 B] 99s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 99s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libexception-class-perl all 1.45-1 [28.6 kB] 99s Get:26 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-deep-perl all 1.204-1 [47.1 kB] 99s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libcapture-tiny-perl all 0.48-2 [20.2 kB] 99s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 99s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtext-diff-perl all 1.45-2 [25.6 kB] 99s Get:30 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-differences-perl all 0.71-1 [15.8 kB] 99s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 99s Get:32 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-exception-perl all 0.43-3 [13.4 kB] 99s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-warn-perl all 0.37-2 [12.6 kB] 99s Get:34 http://ftpmaster.internal/ubuntu oracular/universe amd64 libtest-most-perl all 0.38-1 [21.5 kB] 99s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 bioperl all 1.7.8-1 [216 kB] 99s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 99s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 99s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-14-x86-64-linux-gnu amd64 14.1.0-5ubuntu1 [11.9 MB] 99s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-14 amd64 14.1.0-5ubuntu1 [1030 B] 99s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 99s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 99s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-5ubuntu1 [47.6 kB] 99s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-5ubuntu1 [29.1 kB] 99s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-5ubuntu1 [10.3 kB] 99s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-5ubuntu1 [2997 kB] 99s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-5ubuntu1 [1317 kB] 99s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-5ubuntu1 [2733 kB] 99s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-5ubuntu1 [1178 kB] 99s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-5ubuntu1 [1634 kB] 99s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-5ubuntu1 [153 kB] 99s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-14-dev amd64 14.1.0-5ubuntu1 [2813 kB] 99s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14-x86-64-linux-gnu amd64 14.1.0-5ubuntu1 [23.4 MB] 100s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14 amd64 14.1.0-5ubuntu1 [516 kB] 100s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 100s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 100s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 libstdc++-14-dev amd64 14.1.0-5ubuntu1 [2476 kB] 100s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-14-x86-64-linux-gnu amd64 14.1.0-5ubuntu1 [13.4 MB] 100s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-14 amd64 14.1.0-5ubuntu1 [18.0 kB] 100s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 100s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 100s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 100s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 ca-certificates-java all 20240118 [11.6 kB] 100s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 unzip amd64 6.0-28ubuntu5 [180 kB] 100s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 java-wrappers all 0.4 [8662 B] 100s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjaxp1.3-java all 1.3.05-6 [227 kB] 100s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] 100s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 libapache-pom-java all 29-2 [5284 B] 100s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-parent-java all 56-1 [10.7 kB] 100s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-io-java all 2.16.1-1 [451 kB] 100s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 100s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxmlgraphics-commons-java all 2.8-2 [619 kB] 100s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 libbatik-java all 1.17+dfsg-1 [3877 kB] 100s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 libcommons-lang-java all 2.6-10 [270 kB] 100s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjargs-java all 1.0.0-5 [13.9 kB] 100s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 100s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 libxerces2-java all 2.12.2-1 [1430 kB] 100s Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 java-common all 0.75+exp1 [6798 B] 100s Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcsclite1 amd64 2.2.3-1 [23.6 kB] 100s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 openjdk-21-jre-headless amd64 21.0.4+7-1ubuntu2 [46.6 MB] 100s Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 default-jre-headless amd64 2:1.21-75+exp1 [3094 B] 100s Get:81 http://ftpmaster.internal/ubuntu oracular/main amd64 libatk1.0-0t64 amd64 2.52.0-1build1 [55.3 kB] 100s Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 libxi6 amd64 2:1.8.1-1build1 [32.4 kB] 100s Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 libatspi2.0-0t64 amd64 2.52.0-1build1 [80.5 kB] 100s Get:84 http://ftpmaster.internal/ubuntu oracular/main amd64 libatk-bridge2.0-0t64 amd64 2.52.0-1build1 [66.0 kB] 100s Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 100s Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 100s Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 100s Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 100s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB] 100s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo-gobject2 amd64 1.18.0-3build1 [127 kB] 100s Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 libcolord2 amd64 1.4.7-1build2 [149 kB] 100s Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 100s Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 100s Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 100s Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 libcups2t64 amd64 2.4.7-1.2ubuntu9 [267 kB] 100s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libepoxy0 amd64 1.5.10-1build1 [220 kB] 100s Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 100s Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 100s Get:99 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 100s Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 100s Get:101 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [233 kB] 100s Get:102 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [42.3 kB] 100s Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [28.7 kB] 100s Get:104 http://ftpmaster.internal/ubuntu oracular/main amd64 libwayland-client0 amd64 1.22.0-2.1build1 [26.4 kB] 100s Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 libwayland-cursor0 amd64 1.22.0-2.1build1 [10.4 kB] 100s Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 libwayland-egl1 amd64 1.22.0-2.1build1 [5628 B] 100s Get:107 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcomposite1 amd64 1:0.4.5-1build3 [6320 B] 100s Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 100s Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcursor1 amd64 1:1.2.2-1 [20.9 kB] 100s Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 100s Get:111 http://ftpmaster.internal/ubuntu oracular/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 100s Get:112 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 100s Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 libdconf1 amd64 0.40.0-4build2 [39.4 kB] 100s Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 dconf-service amd64 0.40.0-4build2 [27.5 kB] 100s Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 dconf-gsettings-backend amd64 0.40.0-4build2 [22.1 kB] 100s Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 libgtk-3-common all 3.24.43-1ubuntu1 [1201 kB] 100s Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 libgtk-3-0t64 amd64 3.24.43-1ubuntu1 [2899 kB] 101s Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 101s Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 libglapi-mesa amd64 24.0.9-0ubuntu2 [40.7 kB] 101s Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 libx11-xcb1 amd64 2:1.8.7-1build1 [7800 B] 101s Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 101s Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 101s Get:123 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 101s Get:124 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 101s Get:125 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 101s Get:126 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 101s Get:127 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 101s Get:128 http://ftpmaster.internal/ubuntu oracular/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 101s Get:129 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 101s Get:130 http://ftpmaster.internal/ubuntu oracular/main amd64 libvulkan1 amd64 1.3.283.0-1 [143 kB] 101s Get:131 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [20.7 kB] 101s Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 101s Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-intel1 amd64 2.4.121-2 [63.8 kB] 101s Get:134 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-nouveau2 amd64 2.4.121-2 [17.6 kB] 101s Get:135 http://ftpmaster.internal/ubuntu oracular/main amd64 libdrm-radeon1 amd64 2.4.121-2 [20.7 kB] 101s Get:136 http://ftpmaster.internal/ubuntu oracular/main amd64 libllvm17t64 amd64 1:17.0.6-12 [26.2 MB] 101s Get:137 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl1-mesa-dri amd64 24.0.9-0ubuntu2 [8937 kB] 101s Get:138 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx-mesa0 amd64 24.0.9-0ubuntu2 [151 kB] 101s Get:139 http://ftpmaster.internal/ubuntu oracular/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 101s Get:140 http://ftpmaster.internal/ubuntu oracular/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 101s Get:141 http://ftpmaster.internal/ubuntu oracular/main amd64 libasound2-data all 1.2.12-1 [21.0 kB] 101s Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 libasound2t64 amd64 1.2.12-1 [394 kB] 101s Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 101s Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 101s Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 libxtst6 amd64 2:1.2.3-1.1build1 [12.6 kB] 101s Get:146 http://ftpmaster.internal/ubuntu oracular/main amd64 openjdk-21-jre amd64 21.0.4+7-1ubuntu2 [219 kB] 101s Get:147 http://ftpmaster.internal/ubuntu oracular/main amd64 default-jre amd64 2:1.21-75+exp1 [922 B] 101s Get:148 http://ftpmaster.internal/ubuntu oracular/universe amd64 cgview all 0.0.20100111-7 [2220 kB] 102s Get:149 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-data all 6.1.20170106+dfsg2-3 [3966 kB] 102s Get:150 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedcrypto7t64 amd64 2.28.8-1 [209 kB] 102s Get:151 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedx509-1t64 amd64 2.28.8-1 [46.6 kB] 102s Get:152 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedtls14t64 amd64 2.28.8-1 [82.2 kB] 102s Get:153 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 ncbi-blast+ amd64 2.16.0+ds-1 [15.2 MB] 102s Get:154 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 ncbi-blast+-legacy all 2.16.0+ds-1 [4998 B] 102s Get:155 http://ftpmaster.internal/ubuntu oracular/universe amd64 imagemagick-6.q16 amd64 8:6.9.13.12+dfsg1-1 [254 kB] 102s Get:156 http://ftpmaster.internal/ubuntu oracular/universe amd64 imagemagick amd64 8:6.9.13.12+dfsg1-1 [14.2 kB] 102s Get:157 http://ftpmaster.internal/ubuntu oracular/main amd64 liberror-perl all 0.17029-2 [25.6 kB] 102s Get:158 http://ftpmaster.internal/ubuntu oracular/main amd64 libtie-ixhash-perl all 1.23-4 [11.3 kB] 102s Get:159 http://ftpmaster.internal/ubuntu oracular/main amd64 libencode-locale-perl all 1.05-3 [11.6 kB] 102s Get:160 http://ftpmaster.internal/ubuntu oracular/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] 102s Get:161 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-date-perl all 6.06-1 [10.2 kB] 102s Get:162 http://ftpmaster.internal/ubuntu oracular/main amd64 libfile-listing-perl all 6.16-1 [11.3 kB] 102s Get:163 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-tagset-perl all 3.24-1 [14.1 kB] 102s Get:164 http://ftpmaster.internal/ubuntu oracular/main amd64 liburi-perl all 5.28-1 [88.1 kB] 102s Get:165 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-parser-perl amd64 3.82-1 [85.6 kB] 102s Get:166 http://ftpmaster.internal/ubuntu oracular/main amd64 libhtml-tree-perl all 5.07-3 [200 kB] 102s Get:167 http://ftpmaster.internal/ubuntu oracular/main amd64 libclone-perl amd64 0.46-1build3 [10.7 kB] 102s Get:168 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-html-perl all 1.004-3 [15.9 kB] 102s Get:169 http://ftpmaster.internal/ubuntu oracular/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 102s Get:170 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-message-perl all 6.46-1ubuntu1 [75.9 kB] 102s Get:171 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 102s Get:172 http://ftpmaster.internal/ubuntu oracular/main amd64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 102s Get:173 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-openssl-defaults amd64 7build3 [6626 B] 102s Get:174 http://ftpmaster.internal/ubuntu oracular/main amd64 libnet-ssleay-perl amd64 1.94-1build4 [316 kB] 102s Get:175 http://ftpmaster.internal/ubuntu oracular/main amd64 libio-socket-ssl-perl all 2.088-1 [200 kB] 102s Get:176 http://ftpmaster.internal/ubuntu oracular/main amd64 libnet-http-perl all 6.23-1 [22.3 kB] 102s Get:177 http://ftpmaster.internal/ubuntu oracular/main amd64 liblwp-protocol-https-perl all 6.14-1 [9040 B] 102s Get:178 http://ftpmaster.internal/ubuntu oracular/main amd64 libtry-tiny-perl all 0.31-2 [20.8 kB] 102s Get:179 http://ftpmaster.internal/ubuntu oracular/main amd64 libwww-robotrules-perl all 6.02-1 [12.6 kB] 102s Get:180 http://ftpmaster.internal/ubuntu oracular/main amd64 libwww-perl all 6.77-1 [138 kB] 102s Get:181 http://ftpmaster.internal/ubuntu oracular/universe amd64 cct all 1:1.0.3-1 [36.3 MB] 102s Get:182 http://ftpmaster.internal/ubuntu oracular/universe amd64 cct-examples all 1:1.0.3-1 [43.6 MB] 104s Fetched 276 MB in 5s (57.9 MB/s) 104s Selecting previously unselected package libfftw3-double3:amd64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74523 files and directories currently installed.) 104s Preparing to unpack .../000-libfftw3-double3_3.3.10-1ubuntu3_amd64.deb ... 104s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 104s Selecting previously unselected package liblcms2-2:amd64. 104s Preparing to unpack .../001-liblcms2-2_2.14-2build1_amd64.deb ... 104s Unpacking liblcms2-2:amd64 (2.14-2build1) ... 104s Selecting previously unselected package liblqr-1-0:amd64. 104s Preparing to unpack .../002-liblqr-1-0_0.4.2-2.1build2_amd64.deb ... 104s Unpacking liblqr-1-0:amd64 (0.4.2-2.1build2) ... 104s Selecting previously unselected package libltdl7:amd64. 104s Preparing to unpack .../003-libltdl7_2.4.7-7build1_amd64.deb ... 104s Unpacking libltdl7:amd64 (2.4.7-7build1) ... 104s Selecting previously unselected package libopenjp2-7:amd64. 104s Preparing to unpack .../004-libopenjp2-7_2.5.0-2build3_amd64.deb ... 104s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ... 104s Selecting previously unselected package libraw23t64:amd64. 104s Preparing to unpack .../005-libraw23t64_0.21.2-2.1build1_amd64.deb ... 104s Unpacking libraw23t64:amd64 (0.21.2-2.1build1) ... 104s Selecting previously unselected package libwebpdemux2:amd64. 104s Preparing to unpack .../006-libwebpdemux2_1.4.0-0.1_amd64.deb ... 104s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 104s Selecting previously unselected package libwebpmux3:amd64. 104s Preparing to unpack .../007-libwebpmux3_1.4.0-0.1_amd64.deb ... 104s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 104s Selecting previously unselected package imagemagick-6-common. 104s Preparing to unpack .../008-imagemagick-6-common_8%3a6.9.13.12+dfsg1-1_all.deb ... 104s Unpacking imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... 104s Selecting previously unselected package libmagickcore-6.q16-7t64:amd64. 104s Preparing to unpack .../009-libmagickcore-6.q16-7t64_8%3a6.9.13.12+dfsg1-1_amd64.deb ... 104s Unpacking libmagickcore-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... 104s Selecting previously unselected package libmagickwand-6.q16-7t64:amd64. 104s Preparing to unpack .../010-libmagickwand-6.q16-7t64_8%3a6.9.13.12+dfsg1-1_amd64.deb ... 104s Unpacking libmagickwand-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... 104s Selecting previously unselected package libgdk-pixbuf2.0-common. 104s Preparing to unpack .../011-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ... 104s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 104s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 104s Preparing to unpack .../012-libgdk-pixbuf-2.0-0_2.42.12+dfsg-1_amd64.deb ... 104s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... 104s Selecting previously unselected package gtk-update-icon-cache. 104s Preparing to unpack .../013-gtk-update-icon-cache_3.24.43-1ubuntu1_amd64.deb ... 104s Unpacking gtk-update-icon-cache (3.24.43-1ubuntu1) ... 104s Selecting previously unselected package hicolor-icon-theme. 104s Preparing to unpack .../014-hicolor-icon-theme_0.18-1_all.deb ... 104s Unpacking hicolor-icon-theme (0.18-1) ... 104s Selecting previously unselected package humanity-icon-theme. 104s Preparing to unpack .../015-humanity-icon-theme_0.6.16_all.deb ... 104s Unpacking humanity-icon-theme (0.6.16) ... 105s Selecting previously unselected package ubuntu-mono. 105s Preparing to unpack .../016-ubuntu-mono_24.04-0ubuntu1_all.deb ... 105s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 106s Selecting previously unselected package adwaita-icon-theme. 106s Preparing to unpack .../017-adwaita-icon-theme_46.0-1_all.deb ... 106s Unpacking adwaita-icon-theme (46.0-1) ... 106s Selecting previously unselected package at-spi2-common. 106s Preparing to unpack .../018-at-spi2-common_2.52.0-1build1_all.deb ... 106s Unpacking at-spi2-common (2.52.0-1build1) ... 106s Selecting previously unselected package libio-string-perl. 106s Preparing to unpack .../019-libio-string-perl_1.08-4_all.deb ... 106s Unpacking libio-string-perl (1.08-4) ... 106s Selecting previously unselected package libdata-stag-perl. 106s Preparing to unpack .../020-libdata-stag-perl_0.14-3_all.deb ... 106s Unpacking libdata-stag-perl (0.14-3) ... 106s Selecting previously unselected package libbio-perl-perl. 106s Preparing to unpack .../021-libbio-perl-perl_1.7.8-1_all.deb ... 106s Unpacking libbio-perl-perl (1.7.8-1) ... 106s Selecting previously unselected package libclass-data-inheritable-perl. 106s Preparing to unpack .../022-libclass-data-inheritable-perl_0.08-3_all.deb ... 106s Unpacking libclass-data-inheritable-perl (0.08-3) ... 106s Selecting previously unselected package libdevel-stacktrace-perl. 106s Preparing to unpack .../023-libdevel-stacktrace-perl_2.0500-1_all.deb ... 106s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 106s Selecting previously unselected package libexception-class-perl. 106s Preparing to unpack .../024-libexception-class-perl_1.45-1_all.deb ... 106s Unpacking libexception-class-perl (1.45-1) ... 106s Selecting previously unselected package libtest-deep-perl. 106s Preparing to unpack .../025-libtest-deep-perl_1.204-1_all.deb ... 106s Unpacking libtest-deep-perl (1.204-1) ... 106s Selecting previously unselected package libcapture-tiny-perl. 106s Preparing to unpack .../026-libcapture-tiny-perl_0.48-2_all.deb ... 106s Unpacking libcapture-tiny-perl (0.48-2) ... 106s Selecting previously unselected package libalgorithm-diff-perl. 106s Preparing to unpack .../027-libalgorithm-diff-perl_1.201-1_all.deb ... 106s Unpacking libalgorithm-diff-perl (1.201-1) ... 106s Selecting previously unselected package libtext-diff-perl. 106s Preparing to unpack .../028-libtext-diff-perl_1.45-2_all.deb ... 106s Unpacking libtext-diff-perl (1.45-2) ... 106s Selecting previously unselected package libtest-differences-perl. 106s Preparing to unpack .../029-libtest-differences-perl_0.71-1_all.deb ... 106s Unpacking libtest-differences-perl (0.71-1) ... 106s Selecting previously unselected package libsub-uplevel-perl. 106s Preparing to unpack .../030-libsub-uplevel-perl_0.2800-3_all.deb ... 106s Unpacking libsub-uplevel-perl (0.2800-3) ... 106s Selecting previously unselected package libtest-exception-perl. 106s Preparing to unpack .../031-libtest-exception-perl_0.43-3_all.deb ... 106s Unpacking libtest-exception-perl (0.43-3) ... 106s Selecting previously unselected package libtest-warn-perl. 106s Preparing to unpack .../032-libtest-warn-perl_0.37-2_all.deb ... 106s Unpacking libtest-warn-perl (0.37-2) ... 106s Selecting previously unselected package libtest-most-perl. 106s Preparing to unpack .../033-libtest-most-perl_0.38-1_all.deb ... 106s Unpacking libtest-most-perl (0.38-1) ... 106s Selecting previously unselected package bioperl. 106s Preparing to unpack .../034-bioperl_1.7.8-1_all.deb ... 106s Unpacking bioperl (1.7.8-1) ... 106s Selecting previously unselected package libisl23:amd64. 106s Preparing to unpack .../035-libisl23_0.26-3build1_amd64.deb ... 106s Unpacking libisl23:amd64 (0.26-3build1) ... 107s Selecting previously unselected package libmpc3:amd64. 107s Preparing to unpack .../036-libmpc3_1.3.1-1build1_amd64.deb ... 107s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 107s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 107s Preparing to unpack .../037-cpp-14-x86-64-linux-gnu_14.1.0-5ubuntu1_amd64.deb ... 107s Unpacking cpp-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 107s Selecting previously unselected 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Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 111s Selecting previously unselected package libxcb-sync1:amd64. 112s Preparing to unpack .../125-libxcb-sync1_1.17.0-2_amd64.deb ... 112s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 112s Selecting previously unselected package libxcb-xfixes0:amd64. 112s Preparing to unpack .../126-libxcb-xfixes0_1.17.0-2_amd64.deb ... 112s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 112s Selecting previously unselected package libxshmfence1:amd64. 112s Preparing to unpack .../127-libxshmfence1_1.3-1build5_amd64.deb ... 112s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 112s Selecting previously unselected package libxxf86vm1:amd64. 112s Preparing to unpack .../128-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 112s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 112s Selecting previously unselected package libvulkan1:amd64. 112s Preparing to unpack .../129-libvulkan1_1.3.283.0-1_amd64.deb ... 112s Unpacking libvulkan1:amd64 (1.3.283.0-1) ... 112s Selecting previously unselected package libdrm-amdgpu1:amd64. 112s Preparing to unpack .../130-libdrm-amdgpu1_2.4.121-2_amd64.deb ... 112s Unpacking libdrm-amdgpu1:amd64 (2.4.121-2) ... 112s Selecting previously unselected package libpciaccess0:amd64. 112s Preparing to unpack .../131-libpciaccess0_0.17-3build1_amd64.deb ... 112s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 112s Selecting previously unselected package libdrm-intel1:amd64. 112s Preparing to unpack .../132-libdrm-intel1_2.4.121-2_amd64.deb ... 112s Unpacking libdrm-intel1:amd64 (2.4.121-2) ... 112s Selecting previously unselected package libdrm-nouveau2:amd64. 112s Preparing to unpack .../133-libdrm-nouveau2_2.4.121-2_amd64.deb ... 112s Unpacking libdrm-nouveau2:amd64 (2.4.121-2) ... 112s Selecting previously unselected package libdrm-radeon1:amd64. 112s Preparing to unpack .../134-libdrm-radeon1_2.4.121-2_amd64.deb ... 112s Unpacking libdrm-radeon1:amd64 (2.4.121-2) ... 112s Selecting previously unselected package libllvm17t64:amd64. 112s Preparing to unpack .../135-libllvm17t64_1%3a17.0.6-12_amd64.deb ... 112s Unpacking libllvm17t64:amd64 (1:17.0.6-12) ... 112s Selecting previously unselected package libgl1-mesa-dri:amd64. 112s Preparing to unpack .../136-libgl1-mesa-dri_24.0.9-0ubuntu2_amd64.deb ... 112s Unpacking libgl1-mesa-dri:amd64 (24.0.9-0ubuntu2) ... 113s Selecting previously unselected package libglx-mesa0:amd64. 113s Preparing to unpack .../137-libglx-mesa0_24.0.9-0ubuntu2_amd64.deb ... 113s Unpacking libglx-mesa0:amd64 (24.0.9-0ubuntu2) ... 113s Selecting previously unselected package libglx0:amd64. 113s Preparing to unpack .../138-libglx0_1.7.0-1build1_amd64.deb ... 113s Unpacking libglx0:amd64 (1.7.0-1build1) ... 113s Selecting previously unselected package libgl1:amd64. 113s Preparing to unpack .../139-libgl1_1.7.0-1build1_amd64.deb ... 113s Unpacking libgl1:amd64 (1.7.0-1build1) ... 113s Selecting previously unselected package libasound2-data. 113s Preparing to unpack .../140-libasound2-data_1.2.12-1_all.deb ... 113s Unpacking libasound2-data (1.2.12-1) ... 113s Selecting previously unselected package libasound2t64:amd64. 113s Preparing to unpack .../141-libasound2t64_1.2.12-1_amd64.deb ... 113s Unpacking libasound2t64:amd64 (1.2.12-1) ... 113s Selecting previously unselected package libgif7:amd64. 113s Preparing to unpack .../142-libgif7_5.2.2-1ubuntu1_amd64.deb ... 113s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 113s Selecting previously unselected package x11-common. 113s Preparing to unpack .../143-x11-common_1%3a7.7+23ubuntu3_all.deb ... 113s Unpacking x11-common (1:7.7+23ubuntu3) ... 113s Selecting previously unselected package libxtst6:amd64. 113s Preparing to unpack .../144-libxtst6_2%3a1.2.3-1.1build1_amd64.deb ... 113s Unpacking libxtst6:amd64 (2:1.2.3-1.1build1) ... 113s Selecting previously unselected package openjdk-21-jre:amd64. 113s Preparing to unpack .../145-openjdk-21-jre_21.0.4+7-1ubuntu2_amd64.deb ... 113s Unpacking openjdk-21-jre:amd64 (21.0.4+7-1ubuntu2) ... 113s Selecting previously unselected package default-jre. 113s Preparing to unpack .../146-default-jre_2%3a1.21-75+exp1_amd64.deb ... 113s Unpacking default-jre (2:1.21-75+exp1) ... 113s Selecting previously unselected package cgview. 113s Preparing to unpack .../147-cgview_0.0.20100111-7_all.deb ... 113s Unpacking cgview (0.0.20100111-7) ... 113s Selecting previously unselected package ncbi-data. 113s Preparing to unpack .../148-ncbi-data_6.1.20170106+dfsg2-3_all.deb ... 113s Unpacking ncbi-data (6.1.20170106+dfsg2-3) ... 113s Selecting previously unselected package libmbedcrypto7t64:amd64. 113s Preparing to unpack .../149-libmbedcrypto7t64_2.28.8-1_amd64.deb ... 113s Unpacking libmbedcrypto7t64:amd64 (2.28.8-1) ... 113s Selecting previously unselected package libmbedx509-1t64:amd64. 113s Preparing to unpack .../150-libmbedx509-1t64_2.28.8-1_amd64.deb ... 113s Unpacking libmbedx509-1t64:amd64 (2.28.8-1) ... 113s Selecting previously unselected package libmbedtls14t64:amd64. 113s Preparing to unpack .../151-libmbedtls14t64_2.28.8-1_amd64.deb ... 113s Unpacking libmbedtls14t64:amd64 (2.28.8-1) ... 113s Selecting previously unselected package ncbi-blast+. 113s Preparing to unpack .../152-ncbi-blast+_2.16.0+ds-1_amd64.deb ... 113s Unpacking ncbi-blast+ (2.16.0+ds-1) ... 114s Selecting previously unselected package ncbi-blast+-legacy. 114s Preparing to unpack .../153-ncbi-blast+-legacy_2.16.0+ds-1_all.deb ... 114s Unpacking ncbi-blast+-legacy (2.16.0+ds-1) ... 114s Selecting previously unselected package imagemagick-6.q16. 114s Preparing to unpack .../154-imagemagick-6.q16_8%3a6.9.13.12+dfsg1-1_amd64.deb ... 114s Unpacking imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... 114s Selecting previously unselected package imagemagick. 114s Preparing to unpack .../155-imagemagick_8%3a6.9.13.12+dfsg1-1_amd64.deb ... 114s Unpacking imagemagick (8:6.9.13.12+dfsg1-1) ... 114s Selecting previously unselected package liberror-perl. 114s Preparing to unpack .../156-liberror-perl_0.17029-2_all.deb ... 114s Unpacking liberror-perl (0.17029-2) ... 114s Selecting previously unselected package libtie-ixhash-perl. 114s Preparing to unpack .../157-libtie-ixhash-perl_1.23-4_all.deb ... 114s Unpacking libtie-ixhash-perl (1.23-4) ... 114s Selecting previously unselected package libencode-locale-perl. 114s Preparing to unpack .../158-libencode-locale-perl_1.05-3_all.deb ... 114s Unpacking libencode-locale-perl (1.05-3) ... 114s Selecting previously unselected package libtimedate-perl. 114s Preparing to unpack .../159-libtimedate-perl_2.3300-2_all.deb ... 114s Unpacking libtimedate-perl (2.3300-2) ... 114s Selecting previously unselected package libhttp-date-perl. 114s Preparing to unpack .../160-libhttp-date-perl_6.06-1_all.deb ... 114s Unpacking libhttp-date-perl (6.06-1) ... 114s Selecting previously unselected package libfile-listing-perl. 114s Preparing to unpack .../161-libfile-listing-perl_6.16-1_all.deb ... 114s Unpacking libfile-listing-perl (6.16-1) ... 114s Selecting previously unselected package libhtml-tagset-perl. 114s Preparing to unpack .../162-libhtml-tagset-perl_3.24-1_all.deb ... 114s Unpacking libhtml-tagset-perl (3.24-1) ... 114s Selecting previously unselected package liburi-perl. 114s Preparing to unpack .../163-liburi-perl_5.28-1_all.deb ... 114s Unpacking liburi-perl (5.28-1) ... 114s Selecting previously unselected package libhtml-parser-perl:amd64. 114s Preparing to unpack .../164-libhtml-parser-perl_3.82-1_amd64.deb ... 114s Unpacking libhtml-parser-perl:amd64 (3.82-1) ... 114s Selecting previously unselected package libhtml-tree-perl. 114s Preparing to unpack .../165-libhtml-tree-perl_5.07-3_all.deb ... 114s Unpacking libhtml-tree-perl (5.07-3) ... 114s Selecting previously unselected package libclone-perl:amd64. 114s Preparing to unpack .../166-libclone-perl_0.46-1build3_amd64.deb ... 114s Unpacking libclone-perl:amd64 (0.46-1build3) ... 114s Selecting previously unselected package libio-html-perl. 114s Preparing to unpack .../167-libio-html-perl_1.004-3_all.deb ... 114s Unpacking libio-html-perl (1.004-3) ... 114s Selecting previously unselected package liblwp-mediatypes-perl. 114s Preparing to unpack .../168-liblwp-mediatypes-perl_6.04-2_all.deb ... 114s Unpacking liblwp-mediatypes-perl (6.04-2) ... 114s Selecting previously unselected package libhttp-message-perl. 114s Preparing to unpack .../169-libhttp-message-perl_6.46-1ubuntu1_all.deb ... 114s Unpacking libhttp-message-perl (6.46-1ubuntu1) ... 114s Selecting previously unselected package libhttp-cookies-perl. 114s Preparing to unpack .../170-libhttp-cookies-perl_6.11-1_all.deb ... 114s Unpacking libhttp-cookies-perl (6.11-1) ... 114s Selecting previously unselected package libhttp-negotiate-perl. 114s Preparing to unpack .../171-libhttp-negotiate-perl_6.01-2_all.deb ... 114s Unpacking libhttp-negotiate-perl (6.01-2) ... 114s Selecting previously unselected package perl-openssl-defaults:amd64. 114s Preparing to unpack .../172-perl-openssl-defaults_7build3_amd64.deb ... 114s Unpacking perl-openssl-defaults:amd64 (7build3) ... 114s Selecting previously unselected package libnet-ssleay-perl:amd64. 114s Preparing to unpack .../173-libnet-ssleay-perl_1.94-1build4_amd64.deb ... 114s Unpacking libnet-ssleay-perl:amd64 (1.94-1build4) ... 114s Selecting previously unselected package libio-socket-ssl-perl. 114s Preparing to unpack .../174-libio-socket-ssl-perl_2.088-1_all.deb ... 114s Unpacking libio-socket-ssl-perl (2.088-1) ... 114s Selecting previously unselected package libnet-http-perl. 114s Preparing to unpack .../175-libnet-http-perl_6.23-1_all.deb ... 114s Unpacking libnet-http-perl (6.23-1) ... 114s Selecting previously unselected package liblwp-protocol-https-perl. 114s Preparing to unpack .../176-liblwp-protocol-https-perl_6.14-1_all.deb ... 114s Unpacking liblwp-protocol-https-perl (6.14-1) ... 114s Selecting previously unselected package libtry-tiny-perl. 114s Preparing to unpack .../177-libtry-tiny-perl_0.31-2_all.deb ... 114s Unpacking libtry-tiny-perl (0.31-2) ... 114s Selecting previously unselected package libwww-robotrules-perl. 114s Preparing to unpack .../178-libwww-robotrules-perl_6.02-1_all.deb ... 114s Unpacking libwww-robotrules-perl (6.02-1) ... 114s Selecting previously unselected package libwww-perl. 114s Preparing to unpack .../179-libwww-perl_6.77-1_all.deb ... 114s Unpacking libwww-perl (6.77-1) ... 115s Selecting previously unselected package cct. 115s Preparing to unpack .../180-cct_1%3a1.0.3-1_all.deb ... 115s Unpacking cct (1:1.0.3-1) ... 115s Selecting previously unselected package cct-examples. 115s Preparing to unpack .../181-cct-examples_1%3a1.0.3-1_all.deb ... 115s Unpacking cct-examples (1:1.0.3-1) ... 115s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 115s Setting up liblcms2-2:amd64 (2.14-2build1) ... 115s Setting up ncbi-data (6.1.20170106+dfsg2-3) ... 115s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ... 115s Setting up libx11-xcb1:amd64 (2:1.8.7-1build1) ... 115s Setting up libpciaccess0:amd64 (0.17-3build1) ... 115s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 117s Regenerating fonts cache... done. 117s Setting up imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... 117s Setting up libdrm-nouveau2:amd64 (2.4.121-2) ... 117s Setting up libtie-ixhash-perl (1.23-4) ... 117s Setting up libxdamage1:amd64 (1:1.1.6-1build1) ... 117s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 117s Setting up hicolor-icon-theme (0.18-1) ... 117s Setting up libxi6:amd64 (2:1.8.1-1build1) ... 117s Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... 117s Setting up java-common (0.75+exp1) ... 117s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 117s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 117s Setting up libtest-deep-perl (1.204-1) ... 117s Setting up libxcb-render0:amd64 (1.17.0-2) ... 117s Setting up libclone-perl:amd64 (0.46-1build3) ... 117s Setting up libalgorithm-diff-perl (1.201-1) ... 117s Setting up libdrm-radeon1:amd64 (2.4.121-2) ... 117s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 117s Setting up libhtml-tagset-perl (3.24-1) ... 117s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 117s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 117s Setting up unzip (6.0-28ubuntu5) ... 117s Setting up libdrm-intel1:amd64 (2.4.121-2) ... 117s Setting up liblwp-mediatypes-perl (6.04-2) ... 117s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 117s Setting up x11-common (1:7.7+23ubuntu3) ... 118s Setting up libtry-tiny-perl (0.31-2) ... 118s Setting up perl-openssl-defaults:amd64 (7build3) ... 118s Setting up libencode-locale-perl (1.05-3) ... 118s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 118s Setting up libcairo2:amd64 (1.18.0-3build1) ... 118s Setting up libcolord2:amd64 (1.4.7-1build2) ... 118s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 118s Setting up libxcb-present0:amd64 (1.17.0-2) ... 118s Setting up liberror-perl (0.17029-2) ... 118s Setting up libdconf1:amd64 (0.40.0-4build2) ... 118s Setting up libasound2-data (1.2.12-1) ... 118s Setting up libio-string-perl (1.08-4) ... 118s Setting up libclass-data-inheritable-perl (0.08-3) ... 118s Setting up libasound2t64:amd64 (1.2.12-1) ... 118s Setting up libllvm17t64:amd64 (1:17.0.6-12) ... 118s Setting up libepoxy0:amd64 (1.5.10-1build1) ... 118s Setting up libtext-diff-perl (1.45-2) ... 118s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 118s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 118s Setting up libapache-pom-java (29-2) ... 118s Setting up libavahi-common-data:amd64 (0.8-13ubuntu6) ... 118s Setting up libatspi2.0-0t64:amd64 (2.52.0-1build1) ... 118s Setting up libquadmath0:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libxinerama1:amd64 (2:1.1.4-3build1) ... 118s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 118s Setting up libmpc3:amd64 (1.3.1-1build1) ... 118s Setting up libatomic1:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libio-html-perl (1.004-3) ... 118s Setting up libxrandr2:amd64 (2:1.5.4-1) ... 118s Setting up libpcsclite1:amd64 (2.2.3-1) ... 118s Setting up libltdl7:amd64 (2.4.7-7build1) ... 118s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 118s Setting up libglapi-mesa:amd64 (24.0.9-0ubuntu2) ... 118s Setting up libraw23t64:amd64 (0.21.2-2.1build1) ... 118s Setting up libvulkan1:amd64 (1.3.283.0-1) ... 118s Setting up libcapture-tiny-perl (0.48-2) ... 118s Setting up libtimedate-perl (2.3300-2) ... 118s Setting up libubsan1:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... 118s Setting up libgif7:amd64 (5.2.2-1ubuntu1) ... 118s Setting up libdata-stag-perl (0.14-3) ... 118s Setting up liblqr-1-0:amd64 (0.4.2-2.1build2) ... 118s Setting up libxshmfence1:amd64 (1.3-1build5) ... 118s Setting up libhwasan0:amd64 (14.1.0-5ubuntu1) ... 118s Setting up at-spi2-common (2.52.0-1build1) ... 118s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 118s Setting up libasan8:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libxml-commons-external-java (1.4.01-6) ... 118s Setting up libjargs-java (1.0.0-5) ... 118s Setting up libsub-uplevel-perl (0.2800-3) ... 118s Setting up libopenjp2-7:amd64 (2.5.0-2build3) ... 118s Setting up libthai-data (0.1.29-2build1) ... 118s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... 118s Setting up libdevel-stacktrace-perl (2.0500-1) ... 118s Setting up libcairo-gobject2:amd64 (1.18.0-3build1) ... 118s Setting up libwayland-egl1:amd64 (1.22.0-2.1build1) ... 118s Setting up libbio-perl-perl (1.7.8-1) ... 118s Setting up libtsan2:amd64 (14.1.0-5ubuntu1) ... 118s Setting up ca-certificates-java (20240118) ... 118s No JRE found. Skipping Java certificates setup. 118s Setting up libxerces2-java (2.12.2-1) ... 118s Setting up libjaxp1.3-java (1.3.05-6) ... 118s Setting up libisl23:amd64 (0.26-3build1) ... 118s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 118s Setting up libxcomposite1:amd64 (1:0.4.5-1build3) ... 118s Setting up libcc1-0:amd64 (14.1.0-5ubuntu1) ... 118s Setting up liburi-perl (5.28-1) ... 118s Setting up liblsan0:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libitm1:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ... 118s Setting up libwayland-client0:amd64 (1.22.0-2.1build1) ... 118s Setting up libnet-ssleay-perl:amd64 (1.94-1build4) ... 118s Setting up gtk-update-icon-cache (3.24.43-1ubuntu1) ... 118s Setting up libhttp-date-perl (6.06-1) ... 118s Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... 118s Setting up java-wrappers (0.4) ... 118s Setting up libatk1.0-0t64:amd64 (2.52.0-1build1) ... 118s Setting up libfile-listing-perl (6.16-1) ... 118s Setting up openjdk-21-jre-headless:amd64 (21.0.4+7-1ubuntu2) ... 118s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode 118s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 118s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 118s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 118s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 118s Setting up libxtst6:amd64 (2:1.2.3-1.1build1) ... 118s Setting up libtest-warn-perl (0.37-2) ... 118s Setting up libxcursor1:amd64 (1:1.2.2-1) ... 118s Setting up libgl1-mesa-dri:amd64 (24.0.9-0ubuntu2) ... 118s Setting up libcommons-parent-java (56-1) ... 118s Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ... 118s Setting up libtest-differences-perl (0.71-1) ... 118s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 118s Setting up libnet-http-perl (6.23-1) ... 118s Setting up libmagickcore-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... 118s Setting up dconf-service (0.40.0-4build2) ... 118s Setting up libexception-class-perl (1.45-1) ... 118s Setting up libcommons-lang-java (2.6-10) ... 118s Setting up libmagickwand-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... 118s Setting up libthai0:amd64 (0.1.29-2build1) ... 118s Setting up libtest-exception-perl (0.43-3) ... 118s Setting up cpp-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 118s Setting up cpp-14 (14.1.0-5ubuntu1) ... 118s Setting up imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... 118s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode 118s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode 118s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode 118s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode 118s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode 118s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode 118s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode 118s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode 118s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode 118s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode 118s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode 118s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode 118s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode 118s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode 118s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode 118s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode 118s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode 118s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode 118s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode 118s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode 118s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 118s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode 118s Setting up libwww-robotrules-perl (6.02-1) ... 118s Setting up libmbedtls14t64:amd64 (2.28.8-1) ... 118s Setting up libwayland-cursor0:amd64 (1.22.0-2.1build1) ... 118s Setting up libhtml-parser-perl:amd64 (3.82-1) ... 118s Setting up libgcc-14-dev:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libstdc++-14-dev:amd64 (14.1.0-5ubuntu1) ... 118s Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ... 118s Setting up libio-socket-ssl-perl (2.088-1) ... 118s Setting up libhttp-message-perl (6.46-1ubuntu1) ... 118s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 118s Setting up libatk-bridge2.0-0t64:amd64 (2.52.0-1build1) ... 118s Setting up libhttp-negotiate-perl (6.01-2) ... 118s Setting up libglx-mesa0:amd64 (24.0.9-0ubuntu2) ... 118s Setting up libglx0:amd64 (1.7.0-1build1) ... 118s Setting up dconf-gsettings-backend:amd64 (0.40.0-4build2) ... 118s Setting up libhttp-cookies-perl (6.11-1) ... 118s Setting up libtest-most-perl (0.38-1) ... 118s Setting up libcommons-io-java (2.16.1-1) ... 118s Setting up libhtml-tree-perl (5.07-3) ... 118s Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ... 118s Setting up libxmlgraphics-commons-java (2.8-2) ... 118s Setting up ncbi-blast+ (2.16.0+ds-1) ... 118s Setting up libgl1:amd64 (1.7.0-1build1) ... 118s Setting up imagemagick (8:6.9.13.12+dfsg1-1) ... 118s Setting up cpp (4:14.1.0-2ubuntu1) ... 118s Setting up gcc-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 118s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... 118s Setting up libcups2t64:amd64 (2.4.7-1.2ubuntu9) ... 118s Setting up libgtk-3-common (3.24.43-1ubuntu1) ... 118s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... 118s Setting up bioperl (1.7.8-1) ... 118s Setting up ncbi-blast+-legacy (2.16.0+ds-1) ... 118s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 118s Setting up libbatik-java (1.17+dfsg-1) ... 118s Setting up gcc-14 (14.1.0-5ubuntu1) ... 118s Setting up g++-14-x86-64-linux-gnu (14.1.0-5ubuntu1) ... 118s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 118s Setting up g++-14 (14.1.0-5ubuntu1) ... 118s Setting up gcc (4:14.1.0-2ubuntu1) ... 118s Setting up g++ (4:14.1.0-2ubuntu1) ... 118s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 118s Setting up build-essential (12.10ubuntu1) ... 118s Setting up adwaita-icon-theme (46.0-1) ... 118s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 118s Setting up liblwp-protocol-https-perl (6.14-1) ... 118s Setting up libwww-perl (6.77-1) ... 118s Setting up humanity-icon-theme (0.6.16) ... 118s Setting up ubuntu-mono (24.04-0ubuntu1) ... 118s Processing triggers for man-db (2.12.1-2) ... 120s Processing triggers for libglib2.0-0t64:amd64 (2.80.4-1ubuntu1) ... 120s Setting up libgtk-3-0t64:amd64 (3.24.43-1ubuntu1) ... 120s Processing triggers for libc-bin (2.39-0ubuntu9) ... 120s Processing triggers for ca-certificates-java (20240118) ... 120s Adding debian:ACCVRAIZ1.pem 120s Adding debian:AC_RAIZ_FNMT-RCM.pem 120s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 120s Adding debian:ANF_Secure_Server_Root_CA.pem 120s Adding debian:Actalis_Authentication_Root_CA.pem 120s Adding debian:AffirmTrust_Commercial.pem 120s Adding debian:AffirmTrust_Networking.pem 120s Adding debian:AffirmTrust_Premium.pem 120s Adding debian:AffirmTrust_Premium_ECC.pem 120s Adding debian:Amazon_Root_CA_1.pem 120s Adding debian:Amazon_Root_CA_2.pem 120s Adding debian:Amazon_Root_CA_3.pem 120s Adding debian:Amazon_Root_CA_4.pem 120s Adding debian:Atos_TrustedRoot_2011.pem 120s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 120s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 120s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 120s Adding debian:BJCA_Global_Root_CA1.pem 120s Adding debian:BJCA_Global_Root_CA2.pem 120s Adding debian:Baltimore_CyberTrust_Root.pem 120s Adding debian:Buypass_Class_2_Root_CA.pem 120s Adding debian:Buypass_Class_3_Root_CA.pem 120s Adding debian:CA_Disig_Root_R2.pem 120s Adding debian:CFCA_EV_ROOT.pem 120s Adding debian:COMODO_Certification_Authority.pem 120s Adding debian:COMODO_ECC_Certification_Authority.pem 120s Adding debian:COMODO_RSA_Certification_Authority.pem 120s Adding debian:Certainly_Root_E1.pem 120s Adding debian:Certainly_Root_R1.pem 120s Adding debian:Certigna.pem 120s Adding debian:Certigna_Root_CA.pem 120s Adding debian:Certum_EC-384_CA.pem 120s Adding debian:Certum_Trusted_Network_CA.pem 120s Adding debian:Certum_Trusted_Network_CA_2.pem 120s Adding debian:Certum_Trusted_Root_CA.pem 120s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 120s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 120s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 120s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 120s Adding debian:Comodo_AAA_Services_root.pem 120s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 120s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 120s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 120s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 120s Adding debian:DigiCert_Assured_ID_Root_CA.pem 120s Adding debian:DigiCert_Assured_ID_Root_G2.pem 120s Adding debian:DigiCert_Assured_ID_Root_G3.pem 120s Adding debian:DigiCert_Global_Root_CA.pem 120s Adding debian:DigiCert_Global_Root_G2.pem 120s Adding debian:DigiCert_Global_Root_G3.pem 120s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 120s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 120s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 120s Adding debian:DigiCert_Trusted_Root_G4.pem 120s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 120s Adding debian:Entrust_Root_Certification_Authority.pem 120s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 120s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 120s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 120s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 120s Adding debian:GLOBALTRUST_2020.pem 120s Adding debian:GTS_Root_R1.pem 120s Adding debian:GTS_Root_R2.pem 120s Adding debian:GTS_Root_R3.pem 120s Adding debian:GTS_Root_R4.pem 120s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 120s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 120s Adding debian:GlobalSign_Root_CA.pem 120s Adding debian:GlobalSign_Root_CA_-_R3.pem 120s Adding debian:GlobalSign_Root_CA_-_R6.pem 120s Adding debian:GlobalSign_Root_E46.pem 120s Adding debian:GlobalSign_Root_R46.pem 120s Adding debian:Go_Daddy_Class_2_CA.pem 120s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 120s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 120s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 120s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 120s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 120s Adding debian:HiPKI_Root_CA_-_G1.pem 120s Adding debian:Hongkong_Post_Root_CA_3.pem 120s Adding debian:ISRG_Root_X1.pem 120s Adding debian:ISRG_Root_X2.pem 120s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 120s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 120s Adding debian:Izenpe.com.pem 120s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 120s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 120s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 120s Adding debian:NAVER_Global_Root_Certification_Authority.pem 120s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 120s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 120s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 120s Adding debian:QuoVadis_Root_CA_1_G3.pem 120s Adding debian:QuoVadis_Root_CA_2.pem 120s Adding debian:QuoVadis_Root_CA_2_G3.pem 120s Adding debian:QuoVadis_Root_CA_3.pem 120s Adding debian:QuoVadis_Root_CA_3_G3.pem 120s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 120s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 120s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 120s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 120s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 120s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 120s Adding debian:SZAFIR_ROOT_CA2.pem 120s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 120s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 120s Adding debian:SecureSign_RootCA11.pem 120s Adding debian:SecureTrust_CA.pem 120s Adding debian:Secure_Global_CA.pem 120s Adding debian:Security_Communication_ECC_RootCA1.pem 120s Adding debian:Security_Communication_RootCA2.pem 120s Adding debian:Security_Communication_RootCA3.pem 120s Adding debian:Security_Communication_Root_CA.pem 120s Adding debian:Starfield_Class_2_CA.pem 120s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 120s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 120s Adding debian:SwissSign_Gold_CA_-_G2.pem 120s Adding debian:SwissSign_Silver_CA_-_G2.pem 120s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 120s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 120s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 120s Adding debian:TWCA_Global_Root_CA.pem 120s Adding debian:TWCA_Root_Certification_Authority.pem 120s Adding debian:TeliaSonera_Root_CA_v1.pem 120s Adding debian:Telia_Root_CA_v2.pem 120s Adding debian:TrustAsia_Global_Root_CA_G3.pem 120s Adding debian:TrustAsia_Global_Root_CA_G4.pem 120s Adding debian:Trustwave_Global_Certification_Authority.pem 120s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 120s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 120s Adding debian:TunTrust_Root_CA.pem 120s Adding debian:UCA_Extended_Validation_Root.pem 120s Adding debian:UCA_Global_G2_Root.pem 120s Adding debian:USERTrust_ECC_Certification_Authority.pem 120s Adding debian:USERTrust_RSA_Certification_Authority.pem 120s Adding debian:XRamp_Global_CA_Root.pem 120s Adding debian:certSIGN_ROOT_CA.pem 120s Adding debian:certSIGN_Root_CA_G2.pem 120s Adding debian:e-Szigno_Root_CA_2017.pem 120s Adding debian:ePKI_Root_Certification_Authority.pem 120s Adding debian:emSign_ECC_Root_CA_-_C3.pem 120s Adding debian:emSign_ECC_Root_CA_-_G3.pem 120s Adding debian:emSign_Root_CA_-_C1.pem 120s Adding debian:emSign_Root_CA_-_G1.pem 120s Adding debian:vTrus_ECC_Root_CA.pem 120s Adding debian:vTrus_Root_CA.pem 121s done. 121s Setting up openjdk-21-jre:amd64 (21.0.4+7-1ubuntu2) ... 121s Setting up default-jre-headless (2:1.21-75+exp1) ... 121s Setting up default-jre (2:1.21-75+exp1) ... 121s Setting up cgview (0.0.20100111-7) ... 121s Setting up cct (1:1.0.3-1) ... 121s Setting up cct-examples (1:1.0.3-1) ... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Starting pkgProblemResolver with broken count: 0 122s Starting 2 pkgProblemResolver with broken count: 0 122s Done 122s The following NEW packages will be installed: 122s autopkgtest-satdep 122s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 122s Need to get 0 B/700 B of archives. 122s After this operation, 0 B of additional disk space will be used. 122s Get:1 /tmp/autopkgtest.TNw7D7/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 122s Selecting previously unselected package autopkgtest-satdep. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 93212 files and directories currently installed.) 122s Preparing to unpack .../2-autopkgtest-satdep.deb ... 122s Unpacking autopkgtest-satdep (0) ... 122s Setting up autopkgtest-satdep (0) ... 124s (Reading database ... 93212 files and directories currently installed.) 124s Removing autopkgtest-satdep (0) ... 124s autopkgtest [07:56:07]: test run-unit-test: [----------------------- 125s 'Check environment' test passed 125s Copying and extracting COG files 126s Preparing COG BLAST database 129s COG BLAST database created 129s Processing project 'test_blastn' 129s Processing project 'test_blastn' using configuration 'project_settings.conf' 129s [Friday July 26 07:56:12 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastn/project_settings.conf. 129s [Friday July 26 07:56:12 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_blastn/reference_genome for BLAST searches. 129s [Friday July 26 07:56:12 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_blastn/reference_genome/split. 129s [Friday July 26 07:56:12 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_blastn/comparison_genomes for BLAST searches. 130s [Friday July 26 07:56:13 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_blastn/comparison_genomes/split. 130s [Friday July 26 07:56:13 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastn/comparison_genomes/split. 130s [Friday July 26 07:56:13 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastn/blast/blast_db. 130s [Friday July 26 07:56:13 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastn/reference_genome/split and databases in /var/tmp/cct/test_output/test_blastn/blast/blast_db. 130s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 130s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 130s Writing HSP to file. 130s Writing HSP to file. 130s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn to view the BLAST results. 130s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 130s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 131s Writing HSP to file. 131s Writing HSP to file. 131s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn to view the BLAST results. 131s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 131s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 131s Writing HSP to file. 131s Writing HSP to file. 131s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn to view the BLAST results. 131s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 131s Warning: [blastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 131s Writing HSP to file. 131s Writing HSP to file. 131s Open /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn to view the BLAST results. 131s [Friday July 26 07:56:14 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastn/blast/blast_results_local. 131s [Friday July 26 07:56:14 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastn/reference_genome. 131s [Friday July 26 07:56:14 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastn/features. 131s [Friday July 26 07:56:14 2024] [Notice] Creating CGView XML files. 131s [Friday July 26 07:56:14 2024] [Notice] The following BLAST results will be drawn, from outside to center: 131s [Friday July 26 07:56:14 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn 131s [Friday July 26 07:56:14 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn 131s [Friday July 26 07:56:14 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn 131s [Friday July 26 07:56:14 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn 131s Creating XML for feature sets on the outside of the backbone circle. 131s Feature sets written first are drawn closest to the backbone circle. 131s Creating XML for ORFs that are in reading frame +1. 131s Creating XML for ORFs that are in reading frame +2. 131s Creating XML for ORFs that are in reading frame +3. 131s Creating XML for feature sets on the inside of the backbone circle. 131s Feature sets written first are drawn closest to the backbone circle. 131s Creating XML for ORFs that are in reading frame -1. 131s Creating XML for ORFs that are in reading frame -2. 131s Creating XML for ORFs that are in reading frame -3. 131s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn. 131s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn. 131s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn. 131s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_blastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn. 131s Creating XML for GC content information. 131s Plotting GC content using a window size of 500 and a step of 1. 131s The maximum GC content value is 0.5768. 131s The minimum GC content value is 0.4311. 131s The average GC content value is 0.5051. 131s GC content will be scaled based on the maximum and minimum values. 131s GC content will be plotted as the deviation from the average value. 131s Creating XML for GC skew information. 131s Plotting GC skew using a window size of 500 and a step of 1. 131s The maximum GC skew value is 0.1587. 131s The minimum GC skew value is -0.2263. 131s The average GC skew value is -0.0036. 131s GC skew will be scaled based on the maximum and minimum values. 131s GC skew will be plotted as the deviation from the average value. 131s CGView XML file complete. 131s The recommended CGView command is: 131s ---------------------------------- 131s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastn/maps/cgview_xml/test_blastn_project_settings.conf_medium.xml -o map.png 131s Success! 131s The following key-values were used: 131s ----------------------------------- 131s arrowheadLength=6 131s average=T 131s atColorNeg=rgb(51,51,51) 131s atColorPos=rgb(51,51,51) 131s at_content=F 131s atSkewColorNeg=rgb(0,0,153) 131s atSkewColorPos=rgb(153,153,0) 131s at_skew=F 131s backboneColor=rgb(102,102,102) 131s backboneRadius=1000 131s backboneThickness=8 131s backgroundColor=white 131s blast_divider_ruler=F 131s blastRulerColor=rgb(255,165,0) 131s borderColor=black 131s combined_orfs=F 131s details=T 131s draw_divider_rings=T 131s featureOpacity=0.5 131s featureOpacityOther=0.5 131s featureSlotSpacing=6 131s featureThickness=24.27 131s featureThicknessPlot=145.64 131s feature_labels=F 131s gcColorNeg=rgb(0,0,0) 131s gcColorPos=rgb(0,0,0) 131s gc_content=T 131s gcSkewColorNeg=rgb(153,0,153) 131s gcSkewColorPos=rgb(0,153,0) 131s gc_skew=T 131s gene_decoration=arrow 131s gene_labels=F 131s global_label=true 131s height=3000 131s hit_labels=F 131s labelFontSize=15 131s labelPlacementQuality=good 131s labelLineLength=200 131s labelLineThickness=4 131s legend=T 131s legendFontSize=20 131s orf_labels=F 131s maxLabelLength=20 131s maxLegendLength=30 131s maxTitleLength=50 131s minimumFeatureLength=0.2 131s moveInnerLabelsToOuter=false 131s orfColor=rgb(204,0,0) 131s orfs=T 131s orf_size=25 131s otherColor=rgb(51,51,51) 131s parse_reading_frame=F 131s proteinColor=rgb(0,0,153) 131s reading_frames=F 131s rRNAColor=rgb(153,0,153) 131s rulerFontColor=rgb(0,0,0) 131s rulerFontSize=30 131s rulerPadding=40 131s scale=T 131s scale_blast=T 131s show_sequence_features=T 131s show_queries=F 131s startColor=rgb(153,0,153) 131s starts=ttg|ctg|att|atc|ata|atg|gtg 131s step=1 131s stopColor=rgb(204,0,0) 131s stops=taa|tag|tga 131s title= 131s titleFontSize=80 131s tickColor=rgb(0,51,0) 131s tickLength=15 131s tickThickness=6 131s tick_density=0.166666666666667 131s tRNAColor=rgb(153,0,0) 131s useInnerLabels=true 131s use_opacity=F 131s width=3000 131s window=500 131s ----------------------------------- 131s [Friday July 26 07:56:14 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastn/maps/cgview_xml. 131s [Friday July 26 07:56:14 2024] [Notice] Creating CGView maps. 131s Parsing XML input. 134s Drawing features.......................... 134s Positioning and drawing 0 labels.......................... 134s 0 labels were removed. 134s Drawing tick marks. 134s Drawing legends. 134s The map has been drawn. 134s Writing picture to /var/tmp/cct/test_output/test_blastn/maps/test_blastn_project_settings.png 134s Writing HTML to /var/tmp/cct/test_output/test_blastn/maps/test_blastn_project_settings.html 134s [Friday July 26 07:56:17 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastn/maps. 134s Processing project 'test_plots' 134s Processing project 'test_plots' using configuration 'project_settings.conf' 134s [Friday July 26 07:56:17 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_plots/project_settings.conf. 134s [Friday July 26 07:56:17 2024] [Notice] Creating CGView XML files. 135s Creating XML for feature sets on the outside of the backbone circle. 135s Feature sets written first are drawn closest to the backbone circle. 135s Creating XML for ORFs that are in reading frame +1. 135s Creating XML for ORFs that are in reading frame +2. 135s Creating XML for ORFs that are in reading frame +3. 135s Creating XML for feature sets on the inside of the backbone circle. 135s Feature sets written first are drawn closest to the backbone circle. 135s Creating XML for ORFs that are in reading frame -1. 135s Creating XML for ORFs that are in reading frame -2. 135s Creating XML for ORFs that are in reading frame -3. 135s Creating XML for GC content information. 135s Plotting GC content using a window size of 50 and a step of 1. 135s The maximum GC content value is 1.0000. 135s The minimum GC content value is 0.0000. 135s The average GC content value is 0.6000. 135s GC content will be scaled based on the maximum and minimum values. 135s GC content will be plotted as the deviation from the average value. 135s Creating XML for GC skew information. 135s Plotting GC skew using a window size of 50 and a step of 1. 135s The maximum GC skew value is 1.0000. 135s The minimum GC skew value is -1.0000. 135s The average GC skew value is -0.3333. 135s GC skew will be scaled based on the maximum and minimum values. 135s GC skew will be plotted as the deviation from the average value. 135s CGView XML file complete. 135s The recommended CGView command is: 135s ---------------------------------- 135s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_plots/maps/cgview_xml/test_plots_project_settings.conf_medium.xml -o map.png 135s Success! 135s The following key-values were used: 135s ----------------------------------- 135s arrowheadLength=6 135s average=T 135s atColorNeg=rgb(51,51,51) 135s atColorPos=rgb(51,51,51) 135s at_content=F 135s atSkewColorNeg=rgb(0,0,153) 135s atSkewColorPos=rgb(153,153,0) 135s at_skew=F 135s backboneColor=rgb(102,102,102) 135s backboneRadius=1000 135s backboneThickness=8 135s backgroundColor=white 135s blast_divider_ruler=F 135s blastRulerColor=rgb(255,165,0) 135s borderColor=black 135s combined_orfs=F 135s details=T 135s draw_divider_rings=T 135s featureOpacity=0.5 135s featureOpacityOther=0.5 135s featureSlotSpacing=6 135s featureThickness=30 135s featureThicknessPlot=186.00 135s feature_labels=F 135s gcColorNeg=rgb(0,0,0) 135s gcColorPos=rgb(0,0,0) 135s gc_content=T 135s gcSkewColorNeg=rgb(153,0,153) 135s gcSkewColorPos=rgb(0,153,0) 135s gc_skew=T 135s gene_decoration=arrow 135s gene_labels=F 135s global_label=true 135s height=3000 135s hit_labels=F 135s labelFontSize=15 135s labelPlacementQuality=good 135s labelLineLength=200 135s labelLineThickness=4 135s legend=T 135s legendFontSize=20 135s orf_labels=F 135s maxLabelLength=20 135s maxLegendLength=30 135s maxTitleLength=50 135s minimumFeatureLength=0.2 135s moveInnerLabelsToOuter=false 135s orfColor=rgb(204,0,0) 135s orfs=T 135s orf_size=25 135s otherColor=rgb(51,51,51) 135s parse_reading_frame=F 135s proteinColor=rgb(0,0,153) 135s reading_frames=F 135s rRNAColor=rgb(153,0,153) 135s rulerFontColor=rgb(0,0,0) 135s rulerFontSize=30 135s rulerPadding=40 135s scale=T 135s scale_blast=T 135s show_sequence_features=T 135s show_queries=F 135s startColor=rgb(153,0,153) 135s starts=ttg|ctg|att|atc|ata|atg|gtg 135s step=1 135s stopColor=rgb(204,0,0) 135s stops=taa|tag|tga 135s title= 135s titleFontSize=80 135s tickColor=rgb(0,51,0) 135s tickLength=15 135s tickThickness=6 135s tick_density=0.166666666666667 135s tRNAColor=rgb(153,0,0) 135s useInnerLabels=true 135s use_opacity=F 135s width=3000 135s window=50 135s ----------------------------------- 135s [Friday July 26 07:56:18 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_plots/maps/cgview_xml. 135s [Friday July 26 07:56:18 2024] [Notice] Creating CGView maps. 135s Parsing XML input. 136s Drawing features.................. 136s Positioning and drawing 0 labels.......................... 136s 0 labels were removed. 136s Drawing tick marks. 136s Drawing legends. 136s The map has been drawn. 136s Writing picture to /var/tmp/cct/test_output/test_plots/maps/test_plots_project_settings.png 137s Writing HTML to /var/tmp/cct/test_output/test_plots/maps/test_plots_project_settings.html 137s [Friday July 26 07:56:20 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_plots/maps. 137s Processing project 'test_blastp' 137s Processing project 'test_blastp' using configuration 'project_settings.conf' 137s [Friday July 26 07:56:20 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastp/project_settings.conf. 137s [Friday July 26 07:56:20 2024] [Notice] Extracting ORF translations from reference genome sequence in /var/tmp/cct/test_output/test_blastp/reference_genome for BLAST searches. 137s Extracting ORFs in reading frame 1 on strand 1. 137s Extracting ORFs in reading frame 2 on strand 1. 137s Extracting ORFs in reading frame 3 on strand 1. 137s Extracting ORFs in reading frame 1 on strand -1. 137s Extracting ORFs in reading frame 2 on strand -1. 137s Extracting ORFs in reading frame 3 on strand -1. 137s A total of 338 records were written to /var/tmp/cct/test_output/test_blastp/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs. 137s [Friday July 26 07:56:20 2024] [Notice] Reference genome ORF translations have been written to /var/tmp/cct/test_output/test_blastp/reference_genome/orfs. 137s [Friday July 26 07:56:20 2024] [Notice] Copying protein sequences in /var/tmp/cct/test_output/test_blastp/comparison_genomes for BLAST searches. 137s [Friday July 26 07:56:20 2024] [Notice] Protein sequences have been copied to /var/tmp/cct/test_output/test_blastp/comparison_genomes/proteins. 137s [Friday July 26 07:56:20 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastp/comparison_genomes/proteins. 137s [Friday July 26 07:56:20 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastp/blast/blast_db. 137s [Friday July 26 07:56:20 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastp/reference_genome/orfs and databases in /var/tmp/cct/test_output/test_blastp/blast/blast_db. 137s [Friday July 26 07:56:20 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastp/blast/blast_results_local. 137s [Friday July 26 07:56:20 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastp/reference_genome. 137s [Friday July 26 07:56:20 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastp/features. 137s [Friday July 26 07:56:20 2024] [Notice] Creating CGView XML files. 137s Creating XML for feature sets on the outside of the backbone circle. 137s Feature sets written first are drawn closest to the backbone circle. 137s Creating XML for ORFs that are in reading frame +1. 137s Creating XML for ORFs that are in reading frame +2. 137s Creating XML for ORFs that are in reading frame +3. 137s Creating XML for feature sets on the inside of the backbone circle. 137s Feature sets written first are drawn closest to the backbone circle. 137s Creating XML for ORFs that are in reading frame -1. 137s Creating XML for ORFs that are in reading frame -2. 137s Creating XML for ORFs that are in reading frame -3. 137s Creating XML for GC content information. 137s Plotting GC content using a window size of 500 and a step of 1. 137s The maximum GC content value is 0.5768. 137s The minimum GC content value is 0.4311. 137s The average GC content value is 0.5051. 137s GC content will be scaled based on the maximum and minimum values. 137s GC content will be plotted as the deviation from the average value. 137s Creating XML for GC skew information. 137s Plotting GC skew using a window size of 500 and a step of 1. 137s The maximum GC skew value is 0.1587. 137s The minimum GC skew value is -0.2263. 137s The average GC skew value is -0.0036. 137s GC skew will be scaled based on the maximum and minimum values. 137s GC skew will be plotted as the deviation from the average value. 137s CGView XML file complete. 137s The recommended CGView command is: 137s ---------------------------------- 137s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastp/maps/cgview_xml/test_blastp_project_settings.conf_medium.xml -o map.png 137s Success! 137s The following key-values were used: 137s ----------------------------------- 137s arrowheadLength=6 137s average=T 137s atColorNeg=rgb(51,51,51) 137s atColorPos=rgb(51,51,51) 137s at_content=F 137s atSkewColorNeg=rgb(0,0,153) 137s atSkewColorPos=rgb(153,153,0) 137s at_skew=F 137s backboneColor=rgb(102,102,102) 137s backboneRadius=1000 137s backboneThickness=8 137s backgroundColor=white 137s blast_divider_ruler=F 137s blastRulerColor=rgb(255,165,0) 137s borderColor=black 137s combined_orfs=F 137s details=T 137s draw_divider_rings=T 137s featureOpacity=0.5 137s featureOpacityOther=0.5 137s featureSlotSpacing=6 137s featureThickness=30 137s featureThicknessPlot=186.00 137s feature_labels=F 137s gcColorNeg=rgb(0,0,0) 137s gcColorPos=rgb(0,0,0) 137s gc_content=T 137s gcSkewColorNeg=rgb(153,0,153) 137s gcSkewColorPos=rgb(0,153,0) 137s gc_skew=T 137s gene_decoration=arrow 137s gene_labels=F 137s global_label=true 137s height=3000 137s hit_labels=F 137s labelFontSize=15 137s labelPlacementQuality=good 137s labelLineLength=200 137s labelLineThickness=4 137s legend=T 137s legendFontSize=20 137s orf_labels=F 137s maxLabelLength=20 137s maxLegendLength=30 137s maxTitleLength=50 137s minimumFeatureLength=0.2 137s moveInnerLabelsToOuter=false 137s orfColor=rgb(204,0,0) 137s orfs=T 137s orf_size=25 137s otherColor=rgb(51,51,51) 137s parse_reading_frame=F 137s proteinColor=rgb(0,0,153) 137s reading_frames=F 137s rRNAColor=rgb(153,0,153) 137s rulerFontColor=rgb(0,0,0) 137s rulerFontSize=30 137s rulerPadding=40 137s scale=T 137s scale_blast=T 137s show_sequence_features=T 137s show_queries=F 137s startColor=rgb(153,0,153) 137s starts=ttg|ctg|att|atc|ata|atg|gtg 137s step=1 137s stopColor=rgb(204,0,0) 137s stops=taa|tag|tga 137s title= 137s titleFontSize=80 137s tickColor=rgb(0,51,0) 137s tickLength=15 137s tickThickness=6 137s tick_density=0.166666666666667 137s tRNAColor=rgb(153,0,0) 137s useInnerLabels=true 137s use_opacity=F 137s width=3000 137s window=500 137s ----------------------------------- 137s [Friday July 26 07:56:20 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastp/maps/cgview_xml. 137s [Friday July 26 07:56:20 2024] [Notice] Creating CGView maps. 138s Parsing XML input. 140s Drawing features.................. 140s Positioning and drawing 0 labels.......................... 140s 0 labels were removed. 140s Drawing tick marks. 140s Drawing legends. 140s The map has been drawn. 140s Writing picture to /var/tmp/cct/test_output/test_blastp/maps/test_blastp_project_settings.png 140s Writing HTML to /var/tmp/cct/test_output/test_blastp/maps/test_blastp_project_settings.html 140s [Friday July 26 07:56:23 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastp/maps. 140s Processing project 'test_tblastx' 140s Processing project 'test_tblastx' using configuration 'project_settings.conf' 141s [Friday July 26 07:56:24 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_tblastx/project_settings.conf. 141s [Friday July 26 07:56:24 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_tblastx/reference_genome for BLAST searches. 141s [Friday July 26 07:56:24 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_tblastx/reference_genome/split. 141s [Friday July 26 07:56:24 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_tblastx/comparison_genomes for BLAST searches. 141s [Friday July 26 07:56:24 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_tblastx/comparison_genomes/split. 141s [Friday July 26 07:56:24 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_tblastx/comparison_genomes/split. 141s [Friday July 26 07:56:24 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_tblastx/blast/blast_db. 141s [Friday July 26 07:56:24 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_tblastx/reference_genome/split and databases in /var/tmp/cct/test_output/test_tblastx/blast/blast_db. 141s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 142s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx to view the BLAST results. 142s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 142s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx to view the BLAST results. 142s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 142s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx to view the BLAST results. 142s Performing BLAST search for sequence number 1 (_start=1;end=16000;length=16000;source_length=16000). 142s Warning: [tblastx] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Writing HSP to file. 142s Open /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx to view the BLAST results. 142s [Friday July 26 07:56:25 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local. 142s [Friday July 26 07:56:25 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastx/reference_genome. 142s [Friday July 26 07:56:25 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_tblastx/features. 142s [Friday July 26 07:56:25 2024] [Notice] Creating CGView XML files. 142s [Friday July 26 07:56:25 2024] [Notice] The following BLAST results will be drawn, from outside to center: 142s [Friday July 26 07:56:25 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx 142s [Friday July 26 07:56:25 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx 142s [Friday July 26 07:56:25 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx 142s [Friday July 26 07:56:25 2024] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx 143s Creating XML for feature sets on the outside of the backbone circle. 143s Feature sets written first are drawn closest to the backbone circle. 143s Creating XML for ORFs that are in reading frame +1. 143s Creating XML for ORFs that are in reading frame +2. 143s Creating XML for ORFs that are in reading frame +3. 143s Creating XML for feature sets on the inside of the backbone circle. 143s Feature sets written first are drawn closest to the backbone circle. 143s Creating XML for ORFs that are in reading frame -1. 143s Creating XML for ORFs that are in reading frame -2. 143s Creating XML for ORFs that are in reading frame -3. 143s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_tblastx. 143s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastx. 143s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_tblastx. 143s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastx/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastx. 143s Creating XML for GC content information. 143s Plotting GC content using a window size of 500 and a step of 1. 143s The maximum GC content value is 0.5768. 143s The minimum GC content value is 0.4311. 143s The average GC content value is 0.5051. 143s GC content will be scaled based on the maximum and minimum values. 143s GC content will be plotted as the deviation from the average value. 143s Creating XML for GC skew information. 143s Plotting GC skew using a window size of 500 and a step of 1. 143s The maximum GC skew value is 0.1587. 143s The minimum GC skew value is -0.2263. 143s The average GC skew value is -0.0036. 143s GC skew will be scaled based on the maximum and minimum values. 143s GC skew will be plotted as the deviation from the average value. 143s CGView XML file complete. 143s The recommended CGView command is: 143s ---------------------------------- 143s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_tblastx/maps/cgview_xml/test_tblastx_project_settings.conf_medium.xml -o map.png 143s Success! 143s The following key-values were used: 143s ----------------------------------- 143s arrowheadLength=6 143s average=T 143s atColorNeg=rgb(51,51,51) 143s atColorPos=rgb(51,51,51) 143s at_content=F 143s atSkewColorNeg=rgb(0,0,153) 143s atSkewColorPos=rgb(153,153,0) 143s at_skew=F 143s backboneColor=rgb(102,102,102) 143s backboneRadius=1000 143s backboneThickness=8 143s backgroundColor=white 143s blast_divider_ruler=F 143s blastRulerColor=rgb(255,165,0) 143s borderColor=black 143s combined_orfs=F 143s details=T 143s draw_divider_rings=T 143s featureOpacity=0.5 143s featureOpacityOther=0.5 143s featureSlotSpacing=6 143s featureThickness=9.86 143s featureThicknessPlot=59.14 143s feature_labels=F 143s gcColorNeg=rgb(0,0,0) 143s gcColorPos=rgb(0,0,0) 143s gc_content=T 143s gcSkewColorNeg=rgb(153,0,153) 143s gcSkewColorPos=rgb(0,153,0) 143s gc_skew=T 143s gene_decoration=arrow 143s gene_labels=F 143s global_label=true 143s height=3000 143s hit_labels=F 143s labelFontSize=15 143s labelPlacementQuality=good 143s labelLineLength=200 143s labelLineThickness=4 143s legend=T 143s legendFontSize=20 143s orf_labels=F 143s maxLabelLength=20 143s maxLegendLength=30 143s maxTitleLength=50 143s minimumFeatureLength=0.2 143s moveInnerLabelsToOuter=false 143s orfColor=rgb(204,0,0) 143s orfs=T 143s orf_size=25 143s otherColor=rgb(51,51,51) 143s parse_reading_frame=T 143s proteinColor=rgb(0,0,153) 143s reading_frames=F 143s rRNAColor=rgb(153,0,153) 143s rulerFontColor=rgb(0,0,0) 143s rulerFontSize=30 143s rulerPadding=40 143s scale=T 143s scale_blast=T 143s show_sequence_features=T 143s show_queries=T 143s startColor=rgb(153,0,153) 143s starts=ttg|ctg|att|atc|ata|atg|gtg 143s step=1 143s stopColor=rgb(204,0,0) 143s stops=taa|tag|tga 143s title= 143s titleFontSize=80 143s tickColor=rgb(0,51,0) 143s tickLength=15 143s tickThickness=6 143s tick_density=0.166666666666667 143s tRNAColor=rgb(153,0,0) 143s useInnerLabels=true 143s use_opacity=F 143s width=3000 143s window=500 143s ----------------------------------- 143s [Friday July 26 07:56:26 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_tblastx/maps/cgview_xml. 143s [Friday July 26 07:56:26 2024] [Notice] Creating CGView maps. 143s Parsing XML input. 145s Drawing features.................................................................. 145s Positioning and drawing 0 labels.......................... 145s 0 labels were removed. 145s Drawing tick marks. 145s Drawing legends. 145s The map has been drawn. 145s Writing picture to /var/tmp/cct/test_output/test_tblastx/maps/test_tblastx_project_settings.png 146s Writing HTML to /var/tmp/cct/test_output/test_tblastx/maps/test_tblastx_project_settings.html 146s [Friday July 26 07:56:29 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_tblastx/maps. 146s Processing project 'test_tblastn' 146s Processing project 'test_tblastn' using configuration 'project_settings.conf' 146s [Friday July 26 07:56:29 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_tblastn/project_settings.conf. 146s [Friday July 26 07:56:29 2024] [Notice] Extracting ORF translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastn/reference_genome for BLAST searches. 146s Extracting ORFs in reading frame 1 on strand 1. 146s Extracting ORFs in reading frame 2 on strand 1. 146s Extracting ORFs in reading frame 3 on strand 1. 146s Extracting ORFs in reading frame 1 on strand -1. 146s Extracting ORFs in reading frame 2 on strand -1. 146s Extracting ORFs in reading frame 3 on strand -1. 146s A total of 338 records were written to /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs. 146s [Friday July 26 07:56:29 2024] [Notice] Reference genome ORF translations have been written to /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs. 146s [Friday July 26 07:56:29 2024] [Notice] Splitting the comparison genome sequences in /var/tmp/cct/test_output/test_tblastn/comparison_genomes for BLAST searches. 146s [Friday July 26 07:56:29 2024] [Notice] Comparison genome sequences have been split and written to /var/tmp/cct/test_output/test_tblastn/comparison_genomes/split. 146s [Friday July 26 07:56:29 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_tblastn/comparison_genomes/split. 147s [Friday July 26 07:56:30 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_tblastn/blast/blast_db. 147s [Friday July 26 07:56:30 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_tblastn/reference_genome/orfs and databases in /var/tmp/cct/test_output/test_tblastn/blast/blast_db. 147s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 147s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 147s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 147s Writing HSP to file. 147s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 147s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 147s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 147s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 147s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 148s Writing HSP to file. 148s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 148s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Writing HSP to file. 149s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Writing HSP to file. 149s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Writing HSP to file. 149s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 149s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 149s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 150s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 150s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 151s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 151s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 152s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 152s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 153s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 153s Writing HSP to file. 153s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 154s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 154s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Writing HSP to file. 155s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 155s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 155s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Writing HSP to file. 156s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 156s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 156s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 157s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 157s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 158s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 158s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Writing HSP to file. 159s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Writing HSP to file. 159s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 159s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 159s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 160s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 160s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Writing HSP to file. 161s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Writing HSP to file. 161s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 161s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 161s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Writing HSP to file. 162s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 162s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 162s Writing HSP to file. 162s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 163s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 163s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 164s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 164s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 165s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 165s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 166s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 166s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 167s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 167s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Writing HSP to file. 168s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Writing HSP to file. 168s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 168s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 168s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 169s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 169s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Writing HSP to file. 170s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 170s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 170s Writing HSP to file. 170s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Writing HSP to file. 171s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 171s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 171s Writing HSP to file. 171s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 172s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 172s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Writing HSP to file. 173s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 173s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 173s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 174s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 174s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Writing HSP to file. 175s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 175s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 175s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Writing HSP to file. 176s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Writing HSP to file. 176s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Writing HSP to file. 176s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 176s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 176s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Writing HSP to file. 177s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 177s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 177s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 178s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 178s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 179s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 179s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 180s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 180s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Writing HSP to file. 181s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 181s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 181s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Writing HSP to file. 182s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 182s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 182s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Writing HSP to file. 183s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Writing HSP to file. 183s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 183s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 183s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 184s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 184s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn to view the BLAST results. 185s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Writing HSP to file. 185s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 185s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 185s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 186s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 186s Writing HSP to file. 186s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Writing HSP to file. 187s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 187s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 187s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 188s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 188s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 189s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 189s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 190s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 190s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Writing HSP to file. 191s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 191s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 191s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 192s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 192s Writing HSP to file. 192s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 193s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 193s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Writing HSP to file. 194s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 194s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 194s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 195s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 195s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Writing HSP to file. 196s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 196s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 196s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Writing HSP to file. 197s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 197s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 197s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 198s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 198s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Writing HSP to file. 199s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Writing HSP to file. 199s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 199s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 199s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Writing HSP to file. 200s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Writing HSP to file. 200s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 200s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 200s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 201s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 201s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 202s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 202s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 203s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 203s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 204s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 204s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Writing HSP to file. 205s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Writing HSP to file. 205s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 205s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 205s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 206s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 206s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 207s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 207s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Writing HSP to file. 208s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Writing HSP to file. 208s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 208s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 208s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 208s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Writing HSP to file. 209s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Writing HSP to file. 209s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 209s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 209s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Writing HSP to file. 210s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 210s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 210s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 211s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 211s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 212s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 212s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Writing HSP to file. 213s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 213s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 213s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Writing HSP to file. 214s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Writing HSP to file. 214s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Writing HSP to file. 214s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Writing HSP to file. 214s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 214s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 214s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 215s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 215s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 216s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 216s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 217s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 217s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Writing HSP to file. 218s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 218s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 218s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Writing HSP to file. 219s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 219s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 219s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Writing HSP to file. 220s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 220s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 220s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Writing HSP to file. 221s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 221s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 221s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn to view the BLAST results. 222s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 222s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 222s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Writing HSP to file. 223s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 223s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 223s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 224s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 224s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Writing HSP to file. 225s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 225s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 225s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 226s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 226s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 227s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 227s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 228s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 228s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Writing HSP to file. 229s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Writing HSP to file. 229s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Writing HSP to file. 229s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 229s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 229s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Writing HSP to file. 230s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 230s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 230s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 231s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 231s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 232s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 232s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Writing HSP to file. 233s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Writing HSP to file. 233s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 233s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 233s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 234s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 234s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 235s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 235s Writing HSP to file. 235s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 236s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 236s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 237s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 237s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 238s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 238s Writing HSP to file. 238s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 239s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 239s Writing HSP to file. 239s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 240s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Writing HSP to file. 240s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 240s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 240s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 241s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 241s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 241s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 242s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 242s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 243s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 243s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 244s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 244s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Writing HSP to file. 245s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 245s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 245s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Writing HSP to file. 246s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 246s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 246s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 247s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 247s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 247s Writing HSP to file. 247s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 248s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 248s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 249s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 249s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 250s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 250s Writing HSP to file. 250s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Writing HSP to file. 251s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 251s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 251s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 252s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 252s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Writing HSP to file. 253s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 253s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 253s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 254s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 254s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Writing HSP to file. 255s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 255s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 255s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Writing HSP to file. 256s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Writing HSP to file. 256s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 256s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 256s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Writing HSP to file. 257s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Writing HSP to file. 257s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 257s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 257s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 258s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 258s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 259s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 259s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Writing HSP to file. 260s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Writing HSP to file. 260s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn to view the BLAST results. 260s Performing BLAST search for sequence number 1 (orf_1_start=52;end=216;strand=1;rf=1). 260s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 260s Performing BLAST search for sequence number 2 (orf_2_start=271;end=423;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 3 (orf_3_start=538;end=3540;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Writing HSP to file. 261s Performing BLAST search for sequence number 4 (orf_4_start=3748;end=3843;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 5 (orf_5_start=3883;end=4098;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 6 (orf_6_start=4111;end=4218;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 7 (orf_7_start=4258;end=4479;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 8 (orf_8_start=4567;end=4854;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 9 (orf_9_start=4939;end=5136;strand=1;rf=1). 261s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 261s Performing BLAST search for sequence number 10 (orf_10_start=5158;end=5373;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 11 (orf_11_start=5431;end=5529;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 12 (orf_12_start=5551;end=5703;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 13 (orf_13_start=5770;end=5985;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 14 (orf_14_start=6019;end=6093;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 15 (orf_15_start=6094;end=6171;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 16 (orf_16_start=6214;end=6336;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 17 (orf_17_start=6730;end=6813;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 18 (orf_18_start=6976;end=7062;strand=1;rf=1). 262s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 262s Performing BLAST search for sequence number 19 (orf_19_start=7303;end=7383;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 20 (orf_20_start=7435;end=7554;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 21 (orf_21_start=7564;end=7707;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 22 (orf_22_start=7855;end=7965;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 23 (orf_23_start=8044;end=8181;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 24 (orf_24_start=8251;end=8427;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 25 (orf_25_start=8527;end=8688;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 26 (orf_26_start=9028;end=9144;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Writing HSP to file. 263s Performing BLAST search for sequence number 27 (orf_27_start=9181;end=9255;strand=1;rf=1). 263s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 263s Performing BLAST search for sequence number 28 (orf_28_start=9439;end=9621;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 29 (orf_29_start=9700;end=9840;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 30 (orf_30_start=10138;end=10494;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 31 (orf_31_start=10495;end=10584;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 32 (orf_32_start=10687;end=10767;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 33 (orf_33_start=10819;end=10980;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 34 (orf_34_start=11008;end=11085;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 35 (orf_35_start=11164;end=11238;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 36 (orf_36_start=11569;end=11742;strand=1;rf=1). 264s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 264s Performing BLAST search for sequence number 37 (orf_37_start=11743;end=11976;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 38 (orf_38_start=12028;end=12132;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 39 (orf_39_start=12226;end=12333;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 40 (orf_40_start=12349;end=12537;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 41 (orf_41_start=12544;end=12678;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 42 (orf_42_start=12955;end=13035;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 43 (orf_43_start=13198;end=13362;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 44 (orf_44_start=13426;end=13536;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 45 (orf_45_start=13558;end=13674;strand=1;rf=1). 265s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 265s Performing BLAST search for sequence number 46 (orf_46_start=13825;end=13962;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 47 (orf_47_start=14029;end=14121;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 48 (orf_48_start=14389;end=14586;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 49 (orf_49_start=14764;end=14850;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 50 (orf_50_start=14866;end=15039;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 51 (orf_51_start=15256;end=15333;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 52 (orf_52_start=15463;end=15561;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 53 (orf_53_start=15688;end=15873;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 54 (orf_54_start=15886;end=15966;strand=1;rf=1). 266s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 266s Performing BLAST search for sequence number 55 (orf_55_start=221;end=373;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 56 (orf_56_start=377;end=541;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 57 (orf_57_start=545;end=646;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Writing HSP to file. 267s Performing BLAST search for sequence number 58 (orf_58_start=647;end=754;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Writing HSP to file. 267s Performing BLAST search for sequence number 59 (orf_59_start=1406;end=1489;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 60 (orf_60_start=1502;end=1582;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 61 (orf_61_start=1658;end=1750;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 62 (orf_62_start=1919;end=1999;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 63 (orf_63_start=2003;end=2089;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Writing HSP to file. 267s Performing BLAST search for sequence number 64 (orf_64_start=2093;end=2179;strand=1;rf=2). 267s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 267s Performing BLAST search for sequence number 65 (orf_65_start=2195;end=2365;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 66 (orf_66_start=2564;end=2662;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 67 (orf_67_start=2687;end=2779;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 68 (orf_68_start=2831;end=2986;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 69 (orf_69_start=3290;end=3433;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Writing HSP to file. 268s Performing BLAST search for sequence number 70 (orf_70_start=3791;end=3895;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 71 (orf_71_start=3899;end=4003;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 72 (orf_72_start=4019;end=4153;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 73 (orf_73_start=4355;end=4483;strand=1;rf=2). 268s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 268s Performing BLAST search for sequence number 74 (orf_74_start=4667;end=4786;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 75 (orf_75_start=4838;end=5032;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 76 (orf_76_start=5033;end=5149;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 77 (orf_77_start=5630;end=5779;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 78 (orf_78_start=5819;end=5959;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 79 (orf_79_start=6356;end=6442;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 80 (orf_80_start=6521;end=6916;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 81 (orf_81_start=7049;end=7249;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 82 (orf_82_start=7277;end=7357;strand=1;rf=2). 269s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 269s Performing BLAST search for sequence number 83 (orf_83_start=7385;end=7465;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 84 (orf_84_start=7511;end=7594;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 85 (orf_85_start=7616;end=7873;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 86 (orf_86_start=7949;end=8047;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 87 (orf_87_start=8063;end=8158;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 88 (orf_88_start=8345;end=8419;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 89 (orf_89_start=8432;end=8515;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 90 (orf_90_start=8528;end=8638;strand=1;rf=2). 270s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 270s Performing BLAST search for sequence number 91 (orf_91_start=8639;end=8737;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 92 (orf_92_start=8786;end=8887;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Writing HSP to file. 271s Performing BLAST search for sequence number 93 (orf_93_start=8948;end=9070;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Writing HSP to file. 271s Performing BLAST search for sequence number 94 (orf_94_start=9302;end=9424;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 95 (orf_95_start=9470;end=9565;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 96 (orf_96_start=9626;end=9775;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 97 (orf_97_start=10262;end=10465;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 98 (orf_98_start=10601;end=10762;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 99 (orf_99_start=10769;end=10966;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 100 (orf_100_start=11321;end=11398;strand=1;rf=2). 271s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 271s Performing BLAST search for sequence number 101 (orf_101_start=11576;end=11848;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 102 (orf_102_start=11870;end=12028;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 103 (orf_103_start=12173;end=12304;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 104 (orf_104_start=12515;end=12595;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 105 (orf_105_start=12818;end=12904;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 106 (orf_106_start=13628;end=13864;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 107 (orf_107_start=13919;end=14032;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 108 (orf_108_start=14132;end=14380;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 109 (orf_109_start=14555;end=14767;strand=1;rf=2). 272s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 272s Performing BLAST search for sequence number 110 (orf_110_start=14786;end=14998;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 111 (orf_111_start=15110;end=15253;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 112 (orf_112_start=15284;end=15457;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 113 (orf_113_start=15473;end=15553;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 114 (orf_114_start=15572;end=15676;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 115 (orf_115_start=15731;end=15838;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 116 (orf_116_start=15905;end=15991;strand=1;rf=2). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 117 (orf_117_start=450;end=548;strand=1;rf=3). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Performing BLAST search for sequence number 118 (orf_118_start=771;end=893;strand=1;rf=3). 273s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 273s Writing HSP to file. 273s Performing BLAST search for sequence number 119 (orf_119_start=981;end=1142;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 120 (orf_120_start=1359;end=1622;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 121 (orf_121_start=1722;end=1817;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 122 (orf_122_start=1926;end=2006;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 123 (orf_123_start=2283;end=2369;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 124 (orf_124_start=2466;end=2546;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 125 (orf_125_start=2553;end=2666;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 126 (orf_126_start=3054;end=3203;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 127 (orf_127_start=3279;end=3428;strand=1;rf=3). 274s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 274s Performing BLAST search for sequence number 128 (orf_128_start=3537;end=3659;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 129 (orf_129_start=3840;end=3923;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 130 (orf_130_start=4485;end=4562;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 131 (orf_131_start=4590;end=4727;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 132 (orf_132_start=4851;end=4961;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 133 (orf_133_start=5121;end=5501;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 134 (orf_134_start=5538;end=5633;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 135 (orf_135_start=5634;end=5888;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 136 (orf_136_start=6072;end=6185;strand=1;rf=3). 275s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 275s Performing BLAST search for sequence number 137 (orf_137_start=6207;end=6347;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 138 (orf_138_start=6450;end=6524;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 139 (orf_139_start=6753;end=6848;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 140 (orf_140_start=7128;end=7235;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 141 (orf_141_start=7311;end=7394;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 142 (orf_142_start=7473;end=7679;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 143 (orf_143_start=7983;end=8066;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 144 (orf_144_start=8388;end=8495;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Performing BLAST search for sequence number 145 (orf_145_start=8556;end=8789;strand=1;rf=3). 276s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 276s Writing HSP to file. 276s Performing BLAST search for sequence number 146 (orf_146_start=9093;end=9167;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 147 (orf_147_start=9180;end=9305;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 148 (orf_148_start=9366;end=9473;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 149 (orf_149_start=9498;end=9662;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 150 (orf_150_start=9663;end=9821;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 151 (orf_151_start=9936;end=10025;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 152 (orf_152_start=10284;end=10385;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 153 (orf_153_start=10416;end=10574;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Performing BLAST search for sequence number 154 (orf_154_start=10581;end=10697;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 277s Writing HSP to file. 277s Performing BLAST search for sequence number 155 (orf_155_start=10962;end=11159;strand=1;rf=3). 277s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 156 (orf_156_start=11286;end=11450;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 157 (orf_157_start=11550;end=11681;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 158 (orf_158_start=11709;end=11891;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 159 (orf_159_start=12123;end=12203;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 160 (orf_160_start=12288;end=12365;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 161 (orf_161_start=12465;end=12554;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Writing HSP to file. 278s Performing BLAST search for sequence number 162 (orf_162_start=12558;end=12866;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 163 (orf_163_start=12885;end=12959;strand=1;rf=3). 278s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 278s Performing BLAST search for sequence number 164 (orf_164_start=13104;end=13247;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 165 (orf_165_start=13254;end=13370;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 166 (orf_166_start=13887;end=13997;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 167 (orf_167_start=14103;end=14198;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 168 (orf_168_start=14226;end=14336;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 169 (orf_169_start=14631;end=14717;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 170 (orf_170_start=14895;end=15074;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 171 (orf_171_start=15129;end=15215;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 172 (orf_172_start=15429;end=15506;strand=1;rf=3). 279s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 279s Performing BLAST search for sequence number 173 (orf_173_start=15600;end=15695;strand=1;rf=3). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 174 (orf_174_start=15590;end=15679;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 175 (orf_175_start=15356;end=15448;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 176 (orf_176_start=14987;end=15082;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 177 (orf_177_start=14399;end=14575;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 178 (orf_178_start=14195;end=14329;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 179 (orf_179_start=14027;end=14104;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 180 (orf_180_start=13835;end=14017;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 181 (orf_181_start=13736;end=13822;strand=-1;rf=1). 280s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 280s Performing BLAST search for sequence number 182 (orf_182_start=13475;end=13666;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 183 (orf_183_start=13244;end=13375;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 184 (orf_184_start=13100;end=13198;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 185 (orf_185_start=12686;end=12982;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 186 (orf_186_start=12473;end=12550;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 187 (orf_187_start=12305;end=12382;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 188 (orf_188_start=11951;end=12025;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 189 (orf_189_start=11636;end=11755;strand=-1;rf=1). 281s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 281s Performing BLAST search for sequence number 190 (orf_190_start=11525;end=11632;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 191 (orf_191_start=11156;end=11350;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 192 (orf_192_start=10841;end=11092;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 193 (orf_193_start=10694;end=10822;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 194 (orf_194_start=10604;end=10681;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 195 (orf_195_start=10439;end=10597;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 196 (orf_196_start=9461;end=9550;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 197 (orf_197_start=9278;end=9439;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 198 (orf_198_start=9164;end=9262;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 282s Performing BLAST search for sequence number 199 (orf_199_start=8708;end=8830;strand=-1;rf=1). 282s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Writing HSP to file. 283s Performing BLAST search for sequence number 200 (orf_200_start=8459;end=8620;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 201 (orf_201_start=7979;end=8242;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 202 (orf_202_start=7784;end=7879;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 203 (orf_203_start=7595;end=7675;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 204 (orf_204_start=7232;end=7318;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 205 (orf_205_start=7055;end=7135;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 206 (orf_206_start=6935;end=7048;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 207 (orf_207_start=6398;end=6547;strand=-1;rf=1). 283s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 283s Performing BLAST search for sequence number 208 (orf_208_start=6173;end=6322;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 209 (orf_209_start=5867;end=5947;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 210 (orf_210_start=5555;end=5758;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 211 (orf_211_start=5195;end=5539;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 212 (orf_212_start=5018;end=5188;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Writing HSP to file. 284s Performing BLAST search for sequence number 213 (orf_213_start=4835;end=5005;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 214 (orf_214_start=4139;end=4228;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 215 (orf_215_start=3416;end=3529;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 216 (orf_216_start=3254;end=3394;strand=-1;rf=1). 284s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 284s Performing BLAST search for sequence number 217 (orf_217_start=3077;end=3151;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 218 (orf_218_start=2753;end=2848;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 219 (orf_219_start=2366;end=2473;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 220 (orf_220_start=2207;end=2290;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 221 (orf_221_start=1922;end=2128;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 222 (orf_222_start=1535;end=1618;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 223 (orf_223_start=1106;end=1213;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 224 (orf_224_start=812;end=1045;strand=-1;rf=1). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Writing HSP to file. 285s Performing BLAST search for sequence number 225 (orf_225_start=15673;end=15855;strand=-1;rf=2). 285s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 285s Performing BLAST search for sequence number 226 (orf_226_start=15445;end=15549;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 227 (orf_227_start=15250;end=15381;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 228 (orf_228_start=14842;end=15213;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 229 (orf_229_start=14536;end=14799;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 230 (orf_230_start=14254;end=14364;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 231 (orf_231_start=13921;end=14112;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 232 (orf_232_start=13618;end=13869;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 233 (orf_233_start=13459;end=13545;strand=-1;rf=2). 286s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 286s Performing BLAST search for sequence number 234 (orf_234_start=13255;end=13455;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 235 (orf_235_start=13165;end=13242;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 236 (orf_236_start=12442;end=12588;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 237 (orf_237_start=12133;end=12378;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 238 (orf_238_start=12025;end=12105;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 239 (orf_239_start=11629;end=11958;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 240 (orf_240_start=11434;end=11595;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 241 (orf_241_start=11170;end=11244;strand=-1;rf=2). 287s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 287s Performing BLAST search for sequence number 242 (orf_242_start=11053;end=11136;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 243 (orf_243_start=10759;end=10881;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 244 (orf_244_start=10618;end=10740;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 245 (orf_245_start=10243;end=10356;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 246 (orf_246_start=9961;end=10050;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 247 (orf_247_start=9655;end=9732;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 248 (orf_248_start=9490;end=9642;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Performing BLAST search for sequence number 249 (orf_249_start=9340;end=9489;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Writing HSP to file. 288s Performing BLAST search for sequence number 250 (orf_250_start=6061;end=9060;strand=-1;rf=2). 288s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 288s Writing HSP to file. 288s Performing BLAST search for sequence number 251 (orf_251_start=5962;end=6039;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 252 (orf_252_start=5704;end=5925;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 253 (orf_253_start=4951;end=5124;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 254 (orf_254_start=4819;end=4926;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 255 (orf_255_start=4618;end=4794;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 256 (orf_256_start=4351;end=4473;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 257 (orf_257_start=4174;end=4263;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 258 (orf_258_start=3781;end=3930;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 259 (orf_259_start=3508;end=3702;strand=-1;rf=2). 289s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 289s Performing BLAST search for sequence number 260 (orf_260_start=3430;end=3507;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 261 (orf_261_start=3265;end=3387;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 262 (orf_262_start=2788;end=2871;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 263 (orf_263_start=2539;end=2625;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 264 (orf_264_start=2218;end=2298;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 265 (orf_265_start=2047;end=2166;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 266 (orf_266_start=1894;end=2037;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 267 (orf_267_start=1636;end=1746;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 268 (orf_268_start=1420;end=1557;strand=-1;rf=2). 290s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 290s Performing BLAST search for sequence number 269 (orf_269_start=1174;end=1350;strand=-1;rf=2). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 270 (orf_270_start=913;end=1074;strand=-1;rf=2). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 271 (orf_271_start=370;end=573;strand=-1;rf=2). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Writing HSP to file. 291s Performing BLAST search for sequence number 272 (orf_272_start=202;end=357;strand=-1;rf=2). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 273 (orf_273_start=1;end=93;strand=-1;rf=2). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 274 (orf_274_start=15696;end=15899;strand=-1;rf=3). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 275 (orf_275_start=15348;end=15470;strand=-1;rf=3). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 276 (orf_276_start=15150;end=15329;strand=-1;rf=3). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 277 (orf_277_start=14451;end=14558;strand=-1;rf=3). 291s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 291s Performing BLAST search for sequence number 278 (orf_278_start=14085;end=14213;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 279 (orf_279_start=13533;end=13622;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 280 (orf_280_start=13452;end=13526;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 281 (orf_281_start=13050;end=13181;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 282 (orf_282_start=12861;end=12965;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 283 (orf_283_start=12657;end=12785;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 284 (orf_284_start=12534;end=12623;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 285 (orf_285_start=12375;end=12494;strand=-1;rf=3). 292s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 292s Performing BLAST search for sequence number 286 (orf_286_start=12234;end=12311;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 287 (orf_287_start=12030;end=12113;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 288 (orf_288_start=11703;end=11810;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 289 (orf_289_start=11439;end=11570;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Writing HSP to file. 293s Performing BLAST search for sequence number 290 (orf_290_start=11325;end=11420;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 291 (orf_291_start=11178;end=11297;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 292 (orf_292_start=11043;end=11138;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 293 (orf_293_start=10674;end=10763;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 294 (orf_294_start=10329;end=10607;strand=-1;rf=3). 293s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 293s Performing BLAST search for sequence number 295 (orf_295_start=10146;end=10229;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 296 (orf_296_start=9675;end=9887;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 297 (orf_297_start=9483;end=9605;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 298 (orf_298_start=9399;end=9476;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 299 (orf_299_start=8955;end=9221;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Writing HSP to file. 294s Performing BLAST search for sequence number 300 (orf_300_start=8847;end=8954;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Writing HSP to file. 294s Performing BLAST search for sequence number 301 (orf_301_start=8112;end=8195;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 302 (orf_302_start=8019;end=8099;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 303 (orf_303_start=7851;end=7943;strand=-1;rf=3). 294s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 294s Performing BLAST search for sequence number 304 (orf_304_start=7602;end=7682;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 305 (orf_305_start=7512;end=7598;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Writing HSP to file. 295s Performing BLAST search for sequence number 306 (orf_306_start=7422;end=7508;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 307 (orf_307_start=7236;end=7406;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 308 (orf_308_start=6939;end=7037;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 309 (orf_309_start=6822;end=6914;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 310 (orf_310_start=6615;end=6770;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 311 (orf_311_start=6168;end=6311;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Writing HSP to file. 295s Performing BLAST search for sequence number 312 (orf_312_start=5889;end=5978;strand=-1;rf=3). 295s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 295s Performing BLAST search for sequence number 313 (orf_313_start=5520;end=5756;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 314 (orf_314_start=5256;end=5351;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 315 (orf_315_start=5043;end=5198;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 316 (orf_316_start=4665;end=4787;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 317 (orf_317_start=4554;end=4649;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 318 (orf_318_start=4419;end=4553;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 319 (orf_319_start=4188;end=4412;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 320 (orf_320_start=3738;end=3830;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 321 (orf_321_start=3546;end=3638;strand=-1;rf=3). 296s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 296s Performing BLAST search for sequence number 322 (orf_322_start=3159;end=3245;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 323 (orf_323_start=2685;end=3080;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 324 (orf_324_start=2352;end=2552;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 325 (orf_325_start=2244;end=2324;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 326 (orf_326_start=2136;end=2216;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 327 (orf_327_start=2007;end=2090;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 328 (orf_328_start=1728;end=1985;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 329 (orf_329_start=1554;end=1652;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 330 (orf_330_start=1443;end=1538;strand=-1;rf=3). 297s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 297s Performing BLAST search for sequence number 331 (orf_331_start=1182;end=1256;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 332 (orf_332_start=1086;end=1169;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 333 (orf_333_start=963;end=1073;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 334 (orf_334_start=864;end=962;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 335 (orf_335_start=714;end=815;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Writing HSP to file. 298s Performing BLAST search for sequence number 336 (orf_336_start=387;end=653;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Writing HSP to file. 298s Performing BLAST search for sequence number 337 (orf_337_start=279;end=356;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Performing BLAST search for sequence number 338 (orf_338_start=66;end=185;strand=-1;rf=3). 298s Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output 298s Open /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn to view the BLAST results. 298s [Friday July 26 07:59:01 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local. 298s [Friday July 26 07:59:01 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_tblastn/reference_genome. 298s [Friday July 26 07:59:01 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_tblastn/features. 298s [Friday July 26 07:59:01 2024] [Notice] Creating CGView XML files. 298s [Friday July 26 07:59:01 2024] [Notice] The following BLAST results will be drawn, from outside to center: 298s [Friday July 26 07:59:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn 298s [Friday July 26 07:59:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn 298s [Friday July 26 07:59:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn 298s [Friday July 26 07:59:01 2024] [Notice] two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn 299s Creating XML for feature sets on the outside of the backbone circle. 299s Feature sets written first are drawn closest to the backbone circle. 299s Creating XML for ORFs that are in reading frame +1. 299s Creating XML for ORFs that are in reading frame +2. 299s Creating XML for ORFs that are in reading frame +3. 299s Creating XML for feature sets on the inside of the backbone circle. 299s Feature sets written first are drawn closest to the backbone circle. 299s Creating XML for ORFs that are in reading frame -1. 299s Creating XML for ORFs that are in reading frame -2. 299s Creating XML for ORFs that are in reading frame -3. 299s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf.fasta_split_DNA_tblastn. 299s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_end_of_orf_rev_comp.fasta_split_DNA_tblastn. 299s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf.fasta_split_DNA_tblastn. 299s Creating XML for BLAST hits from the BLAST file /var/tmp/cct/test_output/test_tblastn/blast/blast_results_local/two_copies_of_long_ORF_opposite_directions_ORFS_vs_match_start_of_orf_rev_comp.fasta_split_DNA_tblastn. 299s Creating XML for GC content information. 299s Plotting GC content using a window size of 500 and a step of 1. 299s The maximum GC content value is 0.5768. 299s The minimum GC content value is 0.4311. 299s The average GC content value is 0.5051. 299s GC content will be scaled based on the maximum and minimum values. 299s GC content will be plotted as the deviation from the average value. 299s Creating XML for GC skew information. 299s Plotting GC skew using a window size of 500 and a step of 1. 299s The maximum GC skew value is 0.1587. 299s The minimum GC skew value is -0.2263. 299s The average GC skew value is -0.0036. 299s GC skew will be scaled based on the maximum and minimum values. 299s GC skew will be plotted as the deviation from the average value. 299s CGView XML file complete. 299s The recommended CGView command is: 299s ---------------------------------- 299s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_tblastn/maps/cgview_xml/test_tblastn_project_settings.conf_medium.xml -o map.png 299s Success! 299s The following key-values were used: 299s ----------------------------------- 299s arrowheadLength=6 299s average=T 299s atColorNeg=rgb(51,51,51) 299s atColorPos=rgb(51,51,51) 299s at_content=F 299s atSkewColorNeg=rgb(0,0,153) 299s atSkewColorPos=rgb(153,153,0) 299s at_skew=F 299s backboneColor=rgb(102,102,102) 299s backboneRadius=1000 299s backboneThickness=8 299s backgroundColor=white 299s blast_divider_ruler=F 299s blastRulerColor=rgb(255,165,0) 299s borderColor=black 299s combined_orfs=F 299s details=T 299s draw_divider_rings=T 299s featureOpacity=0.5 299s featureOpacityOther=0.5 299s featureSlotSpacing=6 299s featureThickness=9.86 299s featureThicknessPlot=59.14 299s feature_labels=F 299s gcColorNeg=rgb(0,0,0) 299s gcColorPos=rgb(0,0,0) 299s gc_content=T 299s gcSkewColorNeg=rgb(153,0,153) 299s gcSkewColorPos=rgb(0,153,0) 299s gc_skew=T 299s gene_decoration=arrow 299s gene_labels=F 299s global_label=true 299s height=3000 299s hit_labels=F 299s labelFontSize=15 299s labelPlacementQuality=good 299s labelLineLength=200 299s labelLineThickness=4 299s legend=T 299s legendFontSize=20 299s orf_labels=F 299s maxLabelLength=20 299s maxLegendLength=30 299s maxTitleLength=50 299s minimumFeatureLength=0.2 299s moveInnerLabelsToOuter=false 299s orfColor=rgb(204,0,0) 299s orfs=T 299s orf_size=25 299s otherColor=rgb(51,51,51) 299s parse_reading_frame=T 299s proteinColor=rgb(0,0,153) 299s reading_frames=F 299s rRNAColor=rgb(153,0,153) 299s rulerFontColor=rgb(0,0,0) 299s rulerFontSize=30 299s rulerPadding=40 299s scale=T 299s scale_blast=T 299s show_sequence_features=T 299s show_queries=T 299s startColor=rgb(153,0,153) 299s starts=ttg|ctg|att|atc|ata|atg|gtg 299s step=1 299s stopColor=rgb(204,0,0) 299s stops=taa|tag|tga 299s title= 299s titleFontSize=80 299s tickColor=rgb(0,51,0) 299s tickLength=15 299s tickThickness=6 299s tick_density=0.166666666666667 299s tRNAColor=rgb(153,0,0) 299s useInnerLabels=true 299s use_opacity=F 299s width=3000 299s window=500 299s ----------------------------------- 299s [Friday July 26 07:59:02 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_tblastn/maps/cgview_xml. 299s [Friday July 26 07:59:02 2024] [Notice] Creating CGView maps. 299s Parsing XML input. 301s Drawing features.................................................................. 301s Positioning and drawing 0 labels.......................... 301s 0 labels were removed. 301s Drawing tick marks. 301s Drawing legends. 301s The map has been drawn. 301s Writing picture to /var/tmp/cct/test_output/test_tblastn/maps/test_tblastn_project_settings.png 302s Writing HTML to /var/tmp/cct/test_output/test_tblastn/maps/test_tblastn_project_settings.html 302s [Friday July 26 07:59:05 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_tblastn/maps. 302s Processing project 'test_orfs' 302s Processing project 'test_orfs' using configuration 'project_settings.conf' 302s [Friday July 26 07:59:05 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_orfs/project_settings.conf. 302s [Friday July 26 07:59:05 2024] [Notice] Creating CGView XML files. 302s Creating XML for feature sets on the outside of the backbone circle. 302s Feature sets written first are drawn closest to the backbone circle. 302s Creating XML for ORFs that are in reading frame +1. 302s Creating XML for ORFs that are in reading frame +2. 302s Creating XML for ORFs that are in reading frame +3. 302s Creating XML for feature sets on the inside of the backbone circle. 302s Feature sets written first are drawn closest to the backbone circle. 302s Creating XML for ORFs that are in reading frame -1. 302s Creating XML for ORFs that are in reading frame -2. 302s Creating XML for ORFs that are in reading frame -3. 302s CGView XML file complete. 302s The recommended CGView command is: 302s ---------------------------------- 302s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_orfs/maps/cgview_xml/test_orfs_project_settings.conf_medium.xml -o map.png 302s Success! 302s The following key-values were used: 302s ----------------------------------- 302s arrowheadLength=6 302s average=T 302s atColorNeg=rgb(51,51,51) 302s atColorPos=rgb(51,51,51) 302s at_content=F 302s atSkewColorNeg=rgb(0,0,153) 302s atSkewColorPos=rgb(153,153,0) 302s at_skew=F 302s backboneColor=rgb(102,102,102) 302s backboneRadius=1000 302s backboneThickness=8 302s backgroundColor=white 302s blast_divider_ruler=F 302s blastRulerColor=rgb(255,165,0) 302s borderColor=black 302s combined_orfs=F 302s details=T 302s draw_divider_rings=T 302s featureOpacity=0.5 302s featureOpacityOther=0.5 302s featureSlotSpacing=6 302s featureThickness=30 302s featureThicknessPlot=570.00 302s feature_labels=F 302s gcColorNeg=rgb(0,0,0) 302s gcColorPos=rgb(0,0,0) 302s gc_content=F 302s gcSkewColorNeg=rgb(153,0,153) 302s gcSkewColorPos=rgb(0,153,0) 302s gc_skew=F 302s gene_decoration=arrow 302s gene_labels=F 302s global_label=true 302s height=3000 302s hit_labels=F 302s labelFontSize=15 302s labelPlacementQuality=good 302s labelLineLength=200 302s labelLineThickness=4 302s legend=T 302s legendFontSize=20 302s orf_labels=T 302s maxLabelLength=20 302s maxLegendLength=30 302s maxTitleLength=50 302s minimumFeatureLength=0.2 302s moveInnerLabelsToOuter=false 302s orfColor=rgb(204,0,0) 302s orfs=T 302s orf_size=19 302s otherColor=rgb(51,51,51) 302s parse_reading_frame=F 302s proteinColor=rgb(0,0,153) 302s reading_frames=F 302s rRNAColor=rgb(153,0,153) 302s rulerFontColor=rgb(0,0,0) 302s rulerFontSize=30 302s rulerPadding=40 302s scale=T 302s scale_blast=T 302s show_sequence_features=T 302s show_queries=F 302s startColor=rgb(153,0,153) 302s starts=atg 302s step=1 302s stopColor=rgb(204,0,0) 302s stops=taa|tag|tga 302s title= 302s titleFontSize=80 302s tickColor=rgb(0,51,0) 302s tickLength=15 302s tickThickness=6 302s tick_density=0.166666666666667 302s tRNAColor=rgb(153,0,0) 302s useInnerLabels=true 302s use_opacity=F 302s width=3000 302s window=50 302s ----------------------------------- 302s [Friday July 26 07:59:05 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_orfs/maps/cgview_xml. 302s [Friday July 26 07:59:05 2024] [Notice] Creating CGView maps. 302s Parsing XML input. 303s Drawing features.............. 303s Positioning and drawing 41 labels.......................... 303s 0 labels were removed. 303s Drawing tick marks. 303s Drawing legends. 303s The map has been drawn. 303s Writing picture to /var/tmp/cct/test_output/test_orfs/maps/test_orfs_project_settings.png 303s Writing HTML to /var/tmp/cct/test_output/test_orfs/maps/test_orfs_project_settings.html 303s [Friday July 26 07:59:06 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_orfs/maps. 303s Processing project 'test_blastx' 303s Processing project 'test_blastx' using configuration 'project_settings.conf' 303s [Friday July 26 07:59:06 2024] [Notice] Using the settings file /var/tmp/cct/test_output/test_blastx/project_settings.conf. 303s [Friday July 26 07:59:06 2024] [Notice] Splitting the reference genome sequence in /var/tmp/cct/test_output/test_blastx/reference_genome for BLAST searches. 303s [Friday July 26 07:59:06 2024] [Notice] Reference genome sequence has been split and written to /var/tmp/cct/test_output/test_blastx/reference_genome/split. 303s [Friday July 26 07:59:06 2024] [Notice] Copying protein sequences in /var/tmp/cct/test_output/test_blastx/comparison_genomes for BLAST searches. 303s [Friday July 26 07:59:06 2024] [Notice] Protein sequences have been copied to /var/tmp/cct/test_output/test_blastx/comparison_genomes/proteins. 303s [Friday July 26 07:59:06 2024] [Notice] Creating BLAST databases using the files in /var/tmp/cct/test_output/test_blastx/comparison_genomes/proteins. 303s [Friday July 26 07:59:06 2024] [Notice] The BLAST databases have been created in /var/tmp/cct/test_output/test_blastx/blast/blast_db. 303s [Friday July 26 07:59:06 2024] [Notice] Performing BLAST comparisons between sequences in /var/tmp/cct/test_output/test_blastx/reference_genome/split and databases in /var/tmp/cct/test_output/test_blastx/blast/blast_db. 303s [Friday July 26 07:59:06 2024] [Notice] The BLAST results have been written to /var/tmp/cct/test_output/test_blastx/blast/blast_results_local. 303s [Friday July 26 07:59:06 2024] [Notice] Assigning COG categories to CDS translations from reference genome sequence in /var/tmp/cct/test_output/test_blastx/reference_genome. 303s [Friday July 26 07:59:06 2024] [Notice] COG categories have been written to /var/tmp/cct/test_output/test_blastx/features. 303s [Friday July 26 07:59:06 2024] [Notice] Creating CGView XML files. 304s Creating XML for feature sets on the outside of the backbone circle. 304s Feature sets written first are drawn closest to the backbone circle. 304s Creating XML for ORFs that are in reading frame +1. 304s Creating XML for ORFs that are in reading frame +2. 304s Creating XML for ORFs that are in reading frame +3. 304s Creating XML for feature sets on the inside of the backbone circle. 304s Feature sets written first are drawn closest to the backbone circle. 304s Creating XML for ORFs that are in reading frame -1. 304s Creating XML for ORFs that are in reading frame -2. 304s Creating XML for ORFs that are in reading frame -3. 304s Creating XML for GC content information. 304s Plotting GC content using a window size of 500 and a step of 1. 304s The maximum GC content value is 0.5768. 304s The minimum GC content value is 0.4311. 304s The average GC content value is 0.5051. 304s GC content will be scaled based on the maximum and minimum values. 304s GC content will be plotted as the deviation from the average value. 304s Creating XML for GC skew information. 304s Plotting GC skew using a window size of 500 and a step of 1. 304s The maximum GC skew value is 0.1587. 304s The minimum GC skew value is -0.2263. 304s The average GC skew value is -0.0036. 304s GC skew will be scaled based on the maximum and minimum values. 304s GC skew will be plotted as the deviation from the average value. 304s CGView XML file complete. 304s The recommended CGView command is: 304s ---------------------------------- 304s java -jar -Xmx1500m cgview.jar -i /var/tmp/cct/test_output/test_blastx/maps/cgview_xml/test_blastx_project_settings.conf_medium.xml -o map.png 304s Success! 304s The following key-values were used: 304s ----------------------------------- 304s arrowheadLength=6 304s average=T 304s atColorNeg=rgb(51,51,51) 304s atColorPos=rgb(51,51,51) 304s at_content=F 304s atSkewColorNeg=rgb(0,0,153) 304s atSkewColorPos=rgb(153,153,0) 304s at_skew=F 304s backboneColor=rgb(102,102,102) 304s backboneRadius=1000 304s backboneThickness=8 304s backgroundColor=white 304s blast_divider_ruler=F 304s blastRulerColor=rgb(255,165,0) 304s borderColor=black 304s combined_orfs=F 304s details=T 304s draw_divider_rings=T 304s featureOpacity=0.5 304s featureOpacityOther=0.5 304s featureSlotSpacing=6 304s featureThickness=30 304s featureThicknessPlot=186.00 304s feature_labels=F 304s gcColorNeg=rgb(0,0,0) 304s gcColorPos=rgb(0,0,0) 304s gc_content=T 304s gcSkewColorNeg=rgb(153,0,153) 304s gcSkewColorPos=rgb(0,153,0) 304s gc_skew=T 304s gene_decoration=arrow 304s gene_labels=F 304s global_label=true 304s height=3000 304s hit_labels=F 304s labelFontSize=15 304s labelPlacementQuality=good 304s labelLineLength=200 304s labelLineThickness=4 304s legend=T 304s legendFontSize=20 304s orf_labels=F 304s maxLabelLength=20 304s maxLegendLength=30 304s maxTitleLength=50 304s minimumFeatureLength=0.2 304s moveInnerLabelsToOuter=false 304s orfColor=rgb(204,0,0) 304s orfs=T 304s orf_size=25 304s otherColor=rgb(51,51,51) 304s parse_reading_frame=T 304s proteinColor=rgb(0,0,153) 304s reading_frames=F 304s rRNAColor=rgb(153,0,153) 304s rulerFontColor=rgb(0,0,0) 304s rulerFontSize=30 304s rulerPadding=40 304s scale=T 304s scale_blast=T 304s show_sequence_features=T 304s show_queries=T 304s startColor=rgb(153,0,153) 304s starts=ttg|ctg|att|atc|ata|atg|gtg 304s step=1 304s stopColor=rgb(204,0,0) 304s stops=taa|tag|tga 304s title= 304s titleFontSize=80 304s tickColor=rgb(0,51,0) 304s tickLength=15 304s tickThickness=6 304s tick_density=0.166666666666667 304s tRNAColor=rgb(153,0,0) 304s useInnerLabels=true 304s use_opacity=F 304s width=3000 304s window=500 304s ----------------------------------- 304s [Friday July 26 07:59:07 2024] [Notice] CGView XML files have been created in /var/tmp/cct/test_output/test_blastx/maps/cgview_xml. 304s [Friday July 26 07:59:07 2024] [Notice] Creating CGView maps. 304s Parsing XML input. 306s Drawing features.................. 306s Positioning and drawing 0 labels.......................... 306s 0 labels were removed. 306s Drawing tick marks. 306s Drawing legends. 306s The map has been drawn. 306s Writing picture to /var/tmp/cct/test_output/test_blastx/maps/test_blastx_project_settings.png 307s Writing HTML to /var/tmp/cct/test_output/test_blastx/maps/test_blastx_project_settings.html 307s [Friday July 26 07:59:10 2024] [Notice] CGView maps have been created in /var/tmp/cct/test_output/test_blastx/maps. 307s Test project output written to '/var/tmp/cct/test_output' 307s autopkgtest [07:59:10]: test run-unit-test: -----------------------] 307s run-unit-test PASS 307s autopkgtest [07:59:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 307s autopkgtest [07:59:10]: @@@@@@@@@@@@@@@@@@@@ summary 307s run-unit-test PASS 317s nova [W] Skipping flock for amd64 317s Creating nova instance adt-oracular-i386-cct-20240726-075402-juju-7f2275-prod-proposed-migration-environment-3-8600de75-9d0b-4825-a27a-af793db07399 from image adt/ubuntu-oracular-amd64-server-20240726.img (UUID 6c5f29e9-79d7-45b1-9721-03e2205f6a0e)...