0s autopkgtest [16:54:49]: starting date and time: 2024-06-30 16:54:49+0000 0s autopkgtest [16:54:49]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [16:54:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m_2pp23k/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-upgrade qiime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=migration-reference/0 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-38.secgroup --name adt-oracular-i386-qiime-20240630-165449-juju-7f2275-prod-proposed-migration-environment-2-1e0c5d4d-cf7a-4d48-a415-e406b395ed9c --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 70s autopkgtest [16:55:59]: testbed dpkg architecture: amd64 70s autopkgtest [16:55:59]: testbed apt version: 2.9.5 70s autopkgtest [16:55:59]: test architecture: i386 70s autopkgtest [16:55:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s lto-disabled-list 71s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 12.3 kB of archives. 71s After this operation, 0 B of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 lto-disabled-list all 50 [12.3 kB] 72s Fetched 12.3 kB in 0s (946 kB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74422 files and directories currently installed.) 72s Preparing to unpack .../lto-disabled-list_50_all.deb ... 72s Unpacking lto-disabled-list (50) over (49) ... 72s Setting up lto-disabled-list (50) ... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Hit:1 http://ftpmaster.internal/ubuntu oracular InRelease 73s Hit:2 http://ftpmaster.internal/ubuntu oracular-updates InRelease 73s Hit:3 http://ftpmaster.internal/ubuntu oracular-security InRelease 74s Reading package lists... 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s Calculating upgrade... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s autopkgtest [16:56:05]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 76s autopkgtest [16:56:05]: @@@@@@@@@@@@@@@@@@@@ apt-source qiime 77s Get:1 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (dsc) [2597 B] 77s Get:2 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (tar) [621 kB] 77s Get:3 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (diff) [17.9 kB] 77s gpgv: Signature made Mon Jun 3 14:49:39 2024 UTC 77s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 77s gpgv: issuer "athos.ribeiro@canonical.com" 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./qiime_2024.2.0-1ubuntu1.dsc: no acceptable signature found 77s autopkgtest [16:56:06]: testing package qiime version 2024.2.0-1ubuntu1 77s autopkgtest [16:56:06]: build not needed 77s autopkgtest [16:56:06]: test run-unit-test: preparing testbed 79s Note, using file '/tmp/autopkgtest.9tJMjc/1-autopkgtest-satdep.dsc' to get the build dependencies 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Starting pkgProblemResolver with broken count: 0 80s Starting 2 pkgProblemResolver with broken count: 0 80s Done 80s The following NEW packages will be installed: 80s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 80s fonts-glyphicons-halflings g++ g++-13 g++-13-x86-64-linux-gnu 80s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu 80s gcc-x86-64-linux-gnu javascript-common libasan8 libatomic1 libblas3 libcc1-0 80s libgcc-13-dev libgfortran5 libgomp1 libhwasan0 libisl23 libitm1 80s libjs-bootstrap libjs-jquery libjs-popper.js liblapack3 liblsan0 libmpc3 80s libnorm1t64 libpgm-5.3-0t64 libquadmath0 libsodium23 libstdc++-13-dev 80s libtsan2 libubsan1 libxslt1.1 libzmq5 node-fortawesome-fontawesome-free 80s python3-appdirs python3-bcrypt python3-bibtexparser python3-click 80s python3-colorama python3-dateutil python3-decorator python3-dill 80s python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock 80s python3-globus-sdk python3-greenlet python3-iniconfig python3-itsdangerous 80s python3-lxml python3-nacl python3-networkx python3-numpy python3-packaging 80s python3-pandas python3-pandas-lib python3-paramiko python3-parsl 80s python3-pluggy python3-psutil python3-public python3-py python3-pytest 80s python3-setproctitle python3-sqlalchemy python3-tblib python3-tomlkit 80s python3-typeguard python3-tzlocal python3-werkzeug python3-zmq qiime 80s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 98.0 MB of archives. 80s After this operation, 426 MB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB] 80s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 80s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 80s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB] 81s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B] 81s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 81s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 81s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB] 81s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 81s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB] 81s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 81s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB] 81s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB] 81s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB] 81s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB] 81s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB] 81s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB] 81s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB] 81s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB] 81s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB] 81s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 81s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 81s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB] 81s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB] 81s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB] 81s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 81s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 81s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 81s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 81s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B] 81s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 81s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 81s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 81s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 81s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 81s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 81s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 81s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 81s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 81s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 81s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 81s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 81s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 81s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 81s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 81s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 81s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 81s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 81s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-dill all 0.3.8-1 [83.0 kB] 81s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.15.4-1 [12.8 kB] 81s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-itsdangerous all 2.2.0-1 [15.2 kB] 81s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-werkzeug all 3.0.3-1 [170 kB] 81s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 81s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-greenlet amd64 3.0.3-0ubuntu5 [154 kB] 81s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB] 81s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB] 81s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 81s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-public all 4.1.0-1 [7052 B] 81s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flufl.lock all 8.1.0-1 [12.4 kB] 81s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-globus-sdk all 3.41.0-1 [225 kB] 81s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 81s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 81s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-nacl amd64 1.5.0-4build1 [57.9 kB] 81s Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 81s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 81s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 81s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [4450 kB] 81s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pandas all 2.1.4+dfsg-8 [3042 kB] 81s Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bcrypt amd64 4.1.2-1 [229 kB] 81s Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-paramiko all 3.4.0-1ubuntu1 [145 kB] 81s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setproctitle amd64 1.3.3-1build2 [19.0 kB] 81s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tblib all 3.0.0-5 [12.9 kB] 81s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeguard all 4.1.5-1 [32.7 kB] 81s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-py all 1.11.0-2 [72.7 kB] 81s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB] 81s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parsl all 2024.05.27+ds-1 [274 kB] 81s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 81s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 81s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tomlkit all 0.12.5-1 [37.7 kB] 81s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tzlocal all 5.2-1.1 [20.5 kB] 81s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 qiime all 2024.2.0-1ubuntu1 [311 kB] 81s Fetched 98.0 MB in 1s (133 MB/s) 81s Selecting previously unselected package gcc-13-base:amd64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74422 files and directories currently installed.) 82s Preparing to unpack .../00-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ... 82s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 82s Selecting previously unselected package libisl23:amd64. 82s Preparing to unpack .../01-libisl23_0.26-3build1_amd64.deb ... 82s Unpacking libisl23:amd64 (0.26-3build1) ... 82s Selecting previously unselected package libmpc3:amd64. 82s Preparing to unpack .../02-libmpc3_1.3.1-1build1_amd64.deb ... 82s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 82s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 82s Preparing to unpack .../03-cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 82s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 82s Selecting previously unselected package cpp-13. 82s Preparing to unpack .../04-cpp-13_13.2.0-23ubuntu4_amd64.deb ... 82s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 82s Selecting previously unselected package cpp-x86-64-linux-gnu. 82s Preparing to unpack .../05-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 82s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 82s Selecting previously unselected package cpp. 82s Preparing to unpack .../06-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 82s Unpacking cpp (4:13.2.0-7ubuntu1) ... 82s Selecting previously unselected package libcc1-0:amd64. 82s Preparing to unpack .../07-libcc1-0_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libcc1-0:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libgomp1:amd64. 82s Preparing to unpack .../08-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libitm1:amd64. 82s Preparing to unpack .../09-libitm1_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libitm1:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libatomic1:amd64. 82s Preparing to unpack .../10-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libasan8:amd64. 82s Preparing to unpack .../11-libasan8_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libasan8:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package liblsan0:amd64. 82s Preparing to unpack .../12-liblsan0_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking liblsan0:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libtsan2:amd64. 82s Preparing to unpack .../13-libtsan2_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libtsan2:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libubsan1:amd64. 82s Preparing to unpack .../14-libubsan1_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libubsan1:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libhwasan0:amd64. 82s Preparing to unpack .../15-libhwasan0_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libhwasan0:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libquadmath0:amd64. 82s Preparing to unpack .../16-libquadmath0_14.1.0-1ubuntu1_amd64.deb ... 82s Unpacking libquadmath0:amd64 (14.1.0-1ubuntu1) ... 82s Selecting previously unselected package libgcc-13-dev:amd64. 82s Preparing to unpack .../17-libgcc-13-dev_13.2.0-23ubuntu4_amd64.deb ... 82s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 82s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 82s Preparing to unpack .../18-gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 82s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 83s Selecting previously unselected package gcc-13. 83s Preparing to unpack .../19-gcc-13_13.2.0-23ubuntu4_amd64.deb ... 83s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 83s Selecting previously unselected package gcc-x86-64-linux-gnu. 83s Preparing to unpack .../20-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 83s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 83s Selecting previously unselected package gcc. 83s Preparing to unpack .../21-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 83s Unpacking gcc (4:13.2.0-7ubuntu1) ... 83s Selecting previously unselected package libstdc++-13-dev:amd64. 83s Preparing to unpack .../22-libstdc++-13-dev_13.2.0-23ubuntu4_amd64.deb ... 83s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 83s Selecting previously unselected package g++-13-x86-64-linux-gnu. 83s Preparing to unpack .../23-g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 83s Unpacking g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 83s Selecting previously unselected package g++-13. 83s Preparing to unpack .../24-g++-13_13.2.0-23ubuntu4_amd64.deb ... 83s Unpacking g++-13 (13.2.0-23ubuntu4) ... 83s Selecting previously unselected package g++-x86-64-linux-gnu. 83s Preparing to unpack .../25-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 83s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 83s Selecting previously unselected package g++. 83s Preparing to unpack .../26-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 83s Unpacking g++ (4:13.2.0-7ubuntu1) ... 83s Selecting previously unselected package build-essential. 83s Preparing to unpack .../27-build-essential_12.10ubuntu1_amd64.deb ... 83s Unpacking build-essential (12.10ubuntu1) ... 84s Selecting previously unselected package fonts-glyphicons-halflings. 84s Preparing to unpack .../28-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 84s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 84s Selecting previously unselected package javascript-common. 84s Preparing to unpack .../29-javascript-common_11+nmu1_all.deb ... 84s Unpacking javascript-common (11+nmu1) ... 84s Selecting previously unselected package libblas3:amd64. 84s Preparing to unpack .../30-libblas3_3.12.0-3build1_amd64.deb ... 84s Unpacking libblas3:amd64 (3.12.0-3build1) ... 84s Selecting previously unselected package libgfortran5:amd64. 84s Preparing to unpack .../31-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 84s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 84s Selecting previously unselected package libjs-bootstrap. 84s Preparing to unpack .../32-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 84s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 84s Selecting previously unselected package libjs-jquery. 84s Preparing to unpack .../33-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 84s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 84s Selecting previously unselected package libjs-popper.js. 84s Preparing to unpack .../34-libjs-popper.js_1.16.1+ds-6_all.deb ... 84s Unpacking libjs-popper.js (1.16.1+ds-6) ... 84s Selecting previously unselected package liblapack3:amd64. 84s Preparing to unpack .../35-liblapack3_3.12.0-3build1_amd64.deb ... 84s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 84s Selecting previously unselected package libnorm1t64:amd64. 84s Preparing to unpack .../36-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 84s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 84s Selecting previously unselected package libpgm-5.3-0t64:amd64. 84s Preparing to unpack .../37-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 84s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 84s Selecting previously unselected package libsodium23:amd64. 84s Preparing to unpack .../38-libsodium23_1.0.18-1build3_amd64.deb ... 84s Unpacking libsodium23:amd64 (1.0.18-1build3) ... 84s Selecting previously unselected package libxslt1.1:amd64. 84s Preparing to unpack .../39-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 84s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 84s Selecting previously unselected package libzmq5:amd64. 84s Preparing to unpack .../40-libzmq5_4.3.5-1build2_amd64.deb ... 84s Unpacking libzmq5:amd64 (4.3.5-1build2) ... 84s Selecting previously unselected package node-fortawesome-fontawesome-free. 84s Preparing to unpack .../41-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 84s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 84s Selecting previously unselected package python3-appdirs. 84s Preparing to unpack .../42-python3-appdirs_1.4.4-4_all.deb ... 84s Unpacking python3-appdirs (1.4.4-4) ... 84s Selecting previously unselected package python3-bibtexparser. 84s Preparing to unpack .../43-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 84s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 84s Selecting previously unselected package python3-colorama. 84s Preparing to unpack .../44-python3-colorama_0.4.6-4_all.deb ... 84s Unpacking python3-colorama (0.4.6-4) ... 84s Selecting previously unselected package python3-click. 84s Preparing to unpack .../45-python3-click_8.1.7-1_all.deb ... 84s Unpacking python3-click (8.1.7-1) ... 84s Selecting previously unselected package python3-dateutil. 84s Preparing to unpack .../46-python3-dateutil_2.9.0-2_all.deb ... 84s Unpacking python3-dateutil (2.9.0-2) ... 85s Selecting previously unselected package python3-decorator. 85s Preparing to unpack .../47-python3-decorator_5.1.1-5_all.deb ... 85s Unpacking python3-decorator (5.1.1-5) ... 85s Selecting previously unselected package python3-dill. 85s Preparing to unpack .../48-python3-dill_0.3.8-1_all.deb ... 85s Unpacking python3-dill (0.3.8-1) ... 85s Selecting previously unselected package python3-filelock. 85s Preparing to unpack .../49-python3-filelock_3.15.4-1_all.deb ... 85s Unpacking python3-filelock (3.15.4-1) ... 85s Selecting previously unselected package python3-itsdangerous. 85s Preparing to unpack .../50-python3-itsdangerous_2.2.0-1_all.deb ... 85s Unpacking python3-itsdangerous (2.2.0-1) ... 85s Selecting previously unselected package python3-werkzeug. 85s Preparing to unpack .../51-python3-werkzeug_3.0.3-1_all.deb ... 85s Unpacking python3-werkzeug (3.0.3-1) ... 85s Selecting previously unselected package python3-flask. 85s Preparing to unpack .../52-python3-flask_3.0.3-1ubuntu1_all.deb ... 85s Unpacking python3-flask (3.0.3-1ubuntu1) ... 85s Selecting previously unselected package python3-greenlet. 85s Preparing to unpack .../53-python3-greenlet_3.0.3-0ubuntu5_amd64.deb ... 85s Unpacking python3-greenlet (3.0.3-0ubuntu5) ... 85s Selecting previously unselected package python3-sqlalchemy. 85s Preparing to unpack .../54-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ... 85s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ... 85s Selecting previously unselected package python3-flask-sqlalchemy. 85s Preparing to unpack .../55-python3-flask-sqlalchemy_3.0.3-1_all.deb ... 85s Unpacking python3-flask-sqlalchemy (3.0.3-1) ... 85s Selecting previously unselected package python3-psutil. 85s Preparing to unpack .../56-python3-psutil_5.9.8-2build2_amd64.deb ... 85s Unpacking python3-psutil (5.9.8-2build2) ... 85s Selecting previously unselected package python3-public. 85s Preparing to unpack .../57-python3-public_4.1.0-1_all.deb ... 85s Unpacking python3-public (4.1.0-1) ... 85s Selecting previously unselected package python3-flufl.lock. 85s Preparing to unpack .../58-python3-flufl.lock_8.1.0-1_all.deb ... 85s Unpacking python3-flufl.lock (8.1.0-1) ... 85s Selecting previously unselected package python3-globus-sdk. 85s Preparing to unpack .../59-python3-globus-sdk_3.41.0-1_all.deb ... 85s Unpacking python3-globus-sdk (3.41.0-1) ... 85s Selecting previously unselected package python3-iniconfig. 85s Preparing to unpack .../60-python3-iniconfig_1.1.1-2_all.deb ... 85s Unpacking python3-iniconfig (1.1.1-2) ... 85s Selecting previously unselected package python3-lxml:amd64. 85s Preparing to unpack .../61-python3-lxml_5.2.1-1_amd64.deb ... 85s Unpacking python3-lxml:amd64 (5.2.1-1) ... 85s Selecting previously unselected package python3-nacl. 85s Preparing to unpack .../62-python3-nacl_1.5.0-4build1_amd64.deb ... 85s Unpacking python3-nacl (1.5.0-4build1) ... 85s Selecting previously unselected package python3-networkx. 85s Preparing to unpack .../63-python3-networkx_3.2.1-4ubuntu1_all.deb ... 85s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 86s Selecting previously unselected package python3-numpy. 86s Preparing to unpack .../64-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 86s Unpacking python3-numpy (1:1.26.4+ds-10) ... 86s Selecting previously unselected package python3-packaging. 86s Preparing to unpack .../65-python3-packaging_24.0-1_all.deb ... 86s Unpacking python3-packaging (24.0-1) ... 86s Selecting previously unselected package python3-pandas-lib:amd64. 86s Preparing to unpack .../66-python3-pandas-lib_2.1.4+dfsg-8_amd64.deb ... 86s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 86s Selecting previously unselected package python3-pandas. 86s Preparing to unpack .../67-python3-pandas_2.1.4+dfsg-8_all.deb ... 86s Unpacking python3-pandas (2.1.4+dfsg-8) ... 87s Selecting previously unselected package python3-bcrypt. 87s Preparing to unpack .../68-python3-bcrypt_4.1.2-1_amd64.deb ... 87s Unpacking python3-bcrypt (4.1.2-1) ... 87s Selecting previously unselected package python3-paramiko. 87s Preparing to unpack .../69-python3-paramiko_3.4.0-1ubuntu1_all.deb ... 87s Unpacking python3-paramiko (3.4.0-1ubuntu1) ... 87s Selecting previously unselected package python3-setproctitle:amd64. 87s Preparing to unpack .../70-python3-setproctitle_1.3.3-1build2_amd64.deb ... 87s Unpacking python3-setproctitle:amd64 (1.3.3-1build2) ... 87s Selecting previously unselected package python3-tblib. 87s Preparing to unpack .../71-python3-tblib_3.0.0-5_all.deb ... 87s Unpacking python3-tblib (3.0.0-5) ... 87s Selecting previously unselected package python3-typeguard. 87s Preparing to unpack .../72-python3-typeguard_4.1.5-1_all.deb ... 87s Unpacking python3-typeguard (4.1.5-1) ... 87s Selecting previously unselected package python3-py. 87s Preparing to unpack .../73-python3-py_1.11.0-2_all.deb ... 87s Unpacking python3-py (1.11.0-2) ... 87s Selecting previously unselected package python3-zmq. 87s Preparing to unpack .../74-python3-zmq_24.0.1-5build1_amd64.deb ... 87s Unpacking python3-zmq (24.0.1-5build1) ... 87s Selecting previously unselected package python3-parsl. 87s Preparing to unpack .../75-python3-parsl_2024.05.27+ds-1_all.deb ... 87s Unpacking python3-parsl (2024.05.27+ds-1) ... 87s Selecting previously unselected package python3-pluggy. 87s Preparing to unpack .../76-python3-pluggy_1.5.0-1_all.deb ... 87s Unpacking python3-pluggy (1.5.0-1) ... 87s Selecting previously unselected package python3-pytest. 87s Preparing to unpack .../77-python3-pytest_7.4.4-1_all.deb ... 87s Unpacking python3-pytest (7.4.4-1) ... 87s Selecting previously unselected package python3-tomlkit. 87s Preparing to unpack .../78-python3-tomlkit_0.12.5-1_all.deb ... 87s Unpacking python3-tomlkit (0.12.5-1) ... 87s Selecting previously unselected package python3-tzlocal. 87s Preparing to unpack .../79-python3-tzlocal_5.2-1.1_all.deb ... 87s Unpacking python3-tzlocal (5.2-1.1) ... 87s Selecting previously unselected package qiime. 87s Preparing to unpack .../80-qiime_2024.2.0-1ubuntu1_all.deb ... 87s Unpacking qiime (2024.2.0-1ubuntu1) ... 87s Setting up javascript-common (11+nmu1) ... 87s Setting up python3-iniconfig (1.1.1-2) ... 87s Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 87s Setting up python3-filelock (3.15.4-1) ... 87s Setting up libsodium23:amd64 (1.0.18-1build3) ... 87s Setting up python3-tblib (3.0.0-5) ... 88s Setting up python3-py (1.11.0-2) ... 88s Setting up libjs-popper.js (1.16.1+ds-6) ... 88s Setting up python3-colorama (0.4.6-4) ... 88s Setting up python3-public (4.1.0-1) ... 88s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 88s Setting up python3-bcrypt (4.1.2-1) ... 88s Setting up python3-typeguard (4.1.5-1) ... 88s Setting up python3-itsdangerous (2.2.0-1) ... 88s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 88s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 88s Setting up python3-click (8.1.7-1) ... 88s Setting up python3-networkx (3.2.1-4ubuntu1) ... 90s Setting up python3-psutil (5.9.8-2build2) ... 90s Setting up python3-flufl.lock (8.1.0-1) ... 90s Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 90s Setting up python3-decorator (5.1.1-5) ... 90s Setting up libblas3:amd64 (3.12.0-3build1) ... 90s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 90s Setting up python3-packaging (24.0-1) ... 90s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 90s Setting up python3-dill (0.3.8-1) ... 90s Setting up python3-greenlet (3.0.3-0ubuntu5) ... 91s Setting up libquadmath0:amd64 (14.1.0-1ubuntu1) ... 91s Setting up libmpc3:amd64 (1.3.1-1build1) ... 91s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 91s Setting up python3-setproctitle:amd64 (1.3.3-1build2) ... 91s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 91s Setting up python3-pluggy (1.5.0-1) ... 91s Setting up libubsan1:amd64 (14.1.0-1ubuntu1) ... 91s Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ... 91s Setting up libasan8:amd64 (14.1.0-1ubuntu1) ... 91s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 91s Setting up python3-dateutil (2.9.0-2) ... 91s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 91s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 91s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 91s Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ... 91s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 91s Setting up python3-tzlocal (5.2-1.1) ... 91s Setting up libisl23:amd64 (0.26-3build1) ... 91s Setting up python3-tomlkit (0.12.5-1) ... 91s Setting up python3-appdirs (1.4.4-4) ... 92s Setting up libcc1-0:amd64 (14.1.0-1ubuntu1) ... 92s Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ... 92s Setting up python3-nacl (1.5.0-4build1) ... 92s Setting up python3-globus-sdk (3.41.0-1) ... 92s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 92s Setting up libitm1:amd64 (14.1.0-1ubuntu1) ... 92s Setting up liblapack3:amd64 (3.12.0-3build1) ... 92s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 92s Setting up libzmq5:amd64 (4.3.5-1build2) ... 92s Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 92s Setting up python3-pytest (7.4.4-1) ... 92s Setting up python3-sqlalchemy (1.4.50+ds1-1build1) ... 93s Setting up python3-werkzeug (3.0.3-1) ... 93s Setting up python3-zmq (24.0.1-5build1) ... 94s Setting up python3-numpy (1:1.26.4+ds-10) ... 96s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 96s Setting up python3-lxml:amd64 (5.2.1-1) ... 96s Setting up python3-paramiko (3.4.0-1ubuntu1) ... 96s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 96s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 96s Setting up cpp-13 (13.2.0-23ubuntu4) ... 96s Setting up python3-flask (3.0.3-1ubuntu1) ... 96s Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 96s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... 96s Setting up python3-pandas (2.1.4+dfsg-8) ... 101s Setting up gcc-13 (13.2.0-23ubuntu4) ... 101s Setting up cpp (4:13.2.0-7ubuntu1) ... 101s Setting up python3-flask-sqlalchemy (3.0.3-1) ... 101s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 101s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 101s Setting up python3-parsl (2024.05.27+ds-1) ... 101s Setting up gcc (4:13.2.0-7ubuntu1) ... 101s Setting up qiime (2024.2.0-1ubuntu1) ... 102s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 102s Setting up g++-13 (13.2.0-23ubuntu4) ... 102s Setting up g++ (4:13.2.0-7ubuntu1) ... 102s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 102s Setting up build-essential (12.10ubuntu1) ... 102s Processing triggers for man-db (2.12.1-2) ... 103s Processing triggers for libc-bin (2.39-0ubuntu9) ... 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Starting pkgProblemResolver with broken count: 0 104s Starting 2 pkgProblemResolver with broken count: 0 104s Done 104s The following NEW packages will be installed: 104s autopkgtest-satdep 104s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 0 B/696 B of archives. 104s After this operation, 0 B of additional disk space will be used. 104s Get:1 /tmp/autopkgtest.9tJMjc/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 105s Selecting previously unselected package autopkgtest-satdep. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86728 files and directories currently installed.) 105s Preparing to unpack .../2-autopkgtest-satdep.deb ... 105s Unpacking autopkgtest-satdep (0) ... 105s Setting up autopkgtest-satdep (0) ... 107s (Reading database ... 86728 files and directories currently installed.) 107s Removing autopkgtest-satdep (0) ... 107s autopkgtest [16:56:36]: test run-unit-test: [----------------------- 107s autopkgtest [16:56:36]: test run-unit-test: -----------------------] 108s run-unit-test SKIP exit status 77 and marked as skippable 108s autopkgtest [16:56:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 108s autopkgtest [16:56:37]: @@@@@@@@@@@@@@@@@@@@ summary 108s run-unit-test SKIP exit status 77 and marked as skippable 118s nova [W] Skipping flock for amd64 118s Creating nova instance adt-oracular-i386-qiime-20240630-165449-juju-7f2275-prod-proposed-migration-environment-2-1e0c5d4d-cf7a-4d48-a415-e406b395ed9c from image adt/ubuntu-oracular-amd64-server-20240630.img (UUID c5a963fc-3b4c-4041-acc7-a2805897a3dc)...