1s autopkgtest [08:06:09]: starting date and time: 2024-05-28 08:06:09+0000
  2s autopkgtest [08:06:10]: git checkout: 930f72e5 setup-testbed: don't install 'Recommends' for 'linux-generic'
  2s autopkgtest [08:06:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2eje5tey/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy,src:sunpy --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.1-2 astropy/6.0.1-4 sunpy/5.1.3-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-4.secgroup --name adt-oracular-s390x-gudhi-20240528-080608-juju-7f2275-prod-proposed-migration-environment-2-8cf30a7d-12bf-460c-9309-a0f1ad35f596 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 89s autopkgtest [08:07:37]: testbed dpkg architecture: s390x
 89s autopkgtest [08:07:37]: testbed apt version: 2.9.3
 89s autopkgtest [08:07:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 90s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
 91s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3952 B]
 91s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B]
 91s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [60.3 kB]
 91s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [551 kB]
 91s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [114 kB]
 91s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [544 kB]
 91s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1732 B]
 91s Fetched 1350 kB in 1s (1687 kB/s)
 91s Reading package lists...
 94s Reading package lists...
 94s Building dependency tree...
 94s Reading state information...
 94s Calculating upgrade...
 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 94s Reading package lists...
 95s Building dependency tree...
 95s Reading state information...
 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 95s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 95s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 95s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 96s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 96s Reading package lists...
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 97s Calculating upgrade...
 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s autopkgtest [08:07:57]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024
110s autopkgtest [08:07:58]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi
116s Get:1 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (dsc) [3361 B]
116s Get:2 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (tar) [17.7 MB]
116s Get:3 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (diff) [11.4 kB]
116s gpgv: Signature made Fri Apr 12 05:22:35 2024 UTC
116s gpgv:                using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
116s gpgv:                issuer "steve.langasek@ubuntu.com"
116s gpgv: Can't check signature: No public key
116s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.9.0+dfsg-1build3.dsc: no acceptable signature found
119s autopkgtest [08:08:07]: testing package gudhi version 3.9.0+dfsg-1build3
120s autopkgtest [08:08:08]: build not needed
129s autopkgtest [08:08:17]: test python-upstream.sh: preparing testbed
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Starting pkgProblemResolver with broken count: 0
131s Starting 2 pkgProblemResolver with broken count: 0
131s Done
131s The following additional packages will be installed:
131s   blt fonts-lyx libblas3 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
131s   libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
131s   liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libtbb12 libtbbbind-2-5
131s   libtbbmalloc2 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2
131s   libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all
131s   python3-appdirs python3-brotli python3-contourpy python3-cycler
131s   python3-dateutil python3-decorator python3-eagerpy python3-fonttools
131s   python3-fs python3-gudhi python3-iniconfig python3-joblib python3-kiwisolver
131s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
131s   python3-packaging python3-pil python3-pil.imagetk python3-pluggy python3-pot
131s   python3-pytest python3-scipy python3-sklearn python3-sklearn-lib
131s   python3-sympy python3-threadpoolctl python3-tk python3-ufolib2 tk8.6-blt2.5
131s   unicode-data x11-common
131s Suggested packages:
131s   blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc
131s   python3-torch python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft
131s   ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
131s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
131s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
131s   python3-gmpy2 gcc gfortran python3-dev python-pil-doc python-scipy-doc
131s   python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc tix
131s   python3-tk-dbg
131s Recommended packages:
131s   libhwloc-plugins javascript-common python3-simplejson python3-psutil
131s   python3-bs4 python3-cssselect python3-html5lib python3-olefile g++
131s   | c++-compiler isympy-common
131s The following NEW packages will be installed:
131s   autopkgtest-satdep blt fonts-lyx libblas3 libgfortran5 libgomp1
131s   libgraphite2-3 libharfbuzz0b libhwloc15 libimagequant0 libjs-jquery
131s   libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0
131s   libraqm0 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtk8.6
131s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1
131s   python-matplotlib-data python3-all python3-appdirs python3-brotli
131s   python3-contourpy python3-cycler python3-dateutil python3-decorator
131s   python3-eagerpy python3-fonttools python3-fs python3-gudhi python3-iniconfig
131s   python3-joblib python3-kiwisolver python3-lxml python3-lz4
131s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
131s   python3-pil python3-pil.imagetk python3-pluggy python3-pot python3-pytest
131s   python3-scipy python3-sklearn python3-sklearn-lib python3-sympy
131s   python3-threadpoolctl python3-tk python3-ufolib2 tk8.6-blt2.5 unicode-data
131s   x11-common
131s 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded.
131s Need to get 64.8 MB/64.8 MB of archives.
131s After this operation, 276 MB of additional disk space will be used.
131s Get:1 /tmp/autopkgtest.yMM6eq/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [756 B]
131s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB]
132s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
132s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
132s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
132s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
132s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB]
132s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7build1 [662 kB]
132s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x blt s390x 2.5.3+dfsg-7build1 [4840 B]
132s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x fonts-lyx all 2.4.0~RC4-1 [170 kB]
132s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB]
132s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB]
132s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB]
132s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libgraphite2-3 s390x 1.3.14-2build1 [80.0 kB]
132s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB]
132s Get:16 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc15 s390x 2.10.0-1build1 [177 kB]
132s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB]
132s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
132s Get:19 http://ftpmaster.internal/ubuntu oracular/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
132s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB]
132s Get:21 http://ftpmaster.internal/ubuntu oracular/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB]
132s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x liblcms2-2 s390x 2.14-2build1 [172 kB]
132s Get:23 http://ftpmaster.internal/ubuntu oracular/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB]
132s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB]
132s Get:25 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB]
132s Get:26 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB]
132s Get:27 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB]
132s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB]
132s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB]
132s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x libxslt1.1 s390x 1.1.39-0exp1build1 [170 kB]
132s Get:31 http://ftpmaster.internal/ubuntu oracular/universe s390x python-matplotlib-data all 3.6.3-1ubuntu5 [2936 kB]
132s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x python3-all s390x 3.12.3-0ubuntu1 [890 B]
132s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x python3-appdirs all 1.4.4-4 [10.9 kB]
132s Get:34 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-brotli s390x 1.1.0-2build2 [376 kB]
132s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-6ubuntu1 [4119 kB]
132s Get:36 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-contourpy s390x 1.0.7-3 [180 kB]
132s Get:37 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-cycler all 0.12.1-1 [9716 B]
132s Get:38 http://ftpmaster.internal/ubuntu oracular/main s390x python3-dateutil all 2.9.0-2 [80.3 kB]
132s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x python3-decorator all 5.1.1-5 [10.1 kB]
132s Get:40 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-eagerpy all 0.30.0-3 [19.0 kB]
132s Get:41 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-scipy s390x 1.11.4-10 [16.2 MB]
133s Get:42 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
133s Get:43 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-mpmath all 1.3.0-1 [425 kB]
133s Get:44 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sympy all 1.12-8 [3966 kB]
133s Get:45 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-fs all 2.4.16-4 [91.3 kB]
133s Get:46 http://ftpmaster.internal/ubuntu oracular/main s390x python3-lxml s390x 5.2.1-1 [1300 kB]
133s Get:47 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build4 [26.4 kB]
133s Get:48 http://ftpmaster.internal/ubuntu oracular/universe s390x unicode-data all 15.1.0-1 [8878 kB]
133s Get:49 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-fonttools s390x 4.46.0-1build2 [1453 kB]
133s Get:50 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-gudhi s390x 3.9.0+dfsg-1build3 [1737 kB]
133s Get:51 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
133s Get:52 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-joblib all 1.3.2-2 [208 kB]
133s Get:53 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-kiwisolver s390x 1.4.5-1 [52.6 kB]
133s Get:54 http://ftpmaster.internal/ubuntu oracular/main s390x libopenjp2-7 s390x 2.5.0-2build3 [192 kB]
133s Get:55 http://ftpmaster.internal/ubuntu oracular/main s390x python3-pil s390x 10.3.0-2 [488 kB]
133s Get:56 http://ftpmaster.internal/ubuntu oracular/main s390x python3-tk s390x 3.12.3-0ubuntu1 [104 kB]
133s Get:57 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pil.imagetk s390x 10.3.0-2 [9114 B]
133s Get:58 http://ftpmaster.internal/ubuntu oracular/main s390x python3-packaging all 24.0-1 [41.1 kB]
133s Get:59 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-matplotlib s390x 3.6.3-1ubuntu5 [6032 kB]
133s Get:60 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
133s Get:61 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pot s390x 0.9.3+dfsg-2 [221 kB]
134s Get:62 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x python3-pytest all 8.2.1-2 [249 kB]
134s Get:63 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB]
134s Get:64 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-1 [3984 kB]
134s Get:65 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn all 1.4.2+dfsg-1 [2261 kB]
134s Fetched 64.8 MB in 3s (23.3 MB/s)
134s Selecting previously unselected package libtcl8.6:s390x.
134s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 54612 files and directories currently installed.)
134s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ...
134s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ...
134s Selecting previously unselected package libxrender1:s390x.
134s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
134s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
134s Selecting previously unselected package libxft2:s390x.
134s Preparing to unpack .../02-libxft2_2.3.6-1build1_s390x.deb ...
134s Unpacking libxft2:s390x (2.3.6-1build1) ...
134s Selecting previously unselected package x11-common.
134s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ...
134s Unpacking x11-common (1:7.7+23ubuntu3) ...
134s Selecting previously unselected package libxss1:s390x.
134s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_s390x.deb ...
134s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
134s Selecting previously unselected package libtk8.6:s390x.
134s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_s390x.deb ...
134s Unpacking libtk8.6:s390x (8.6.14-1build1) ...
134s Selecting previously unselected package tk8.6-blt2.5.
134s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_s390x.deb ...
134s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
134s Selecting previously unselected package blt.
134s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_s390x.deb ...
134s Unpacking blt (2.5.3+dfsg-7build1) ...
134s Selecting previously unselected package fonts-lyx.
134s Preparing to unpack .../08-fonts-lyx_2.4.0~RC4-1_all.deb ...
134s Unpacking fonts-lyx (2.4.0~RC4-1) ...
134s Selecting previously unselected package libblas3:s390x.
134s Preparing to unpack .../09-libblas3_3.12.0-3build1_s390x.deb ...
134s Unpacking libblas3:s390x (3.12.0-3build1) ...
134s Selecting previously unselected package libgfortran5:s390x.
134s Preparing to unpack .../10-libgfortran5_14.1.0-1ubuntu1_s390x.deb ...
134s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ...
134s Selecting previously unselected package libgomp1:s390x.
134s Preparing to unpack .../11-libgomp1_14.1.0-1ubuntu1_s390x.deb ...
134s Unpacking libgomp1:s390x (14.1.0-1ubuntu1) ...
134s Selecting previously unselected package libgraphite2-3:s390x.
134s Preparing to unpack .../12-libgraphite2-3_1.3.14-2build1_s390x.deb ...
134s Unpacking libgraphite2-3:s390x (1.3.14-2build1) ...
135s Selecting previously unselected package libharfbuzz0b:s390x.
135s Preparing to unpack .../13-libharfbuzz0b_8.3.0-2build2_s390x.deb ...
135s Unpacking libharfbuzz0b:s390x (8.3.0-2build2) ...
135s Selecting previously unselected package libhwloc15:s390x.
135s Preparing to unpack .../14-libhwloc15_2.10.0-1build1_s390x.deb ...
135s Unpacking libhwloc15:s390x (2.10.0-1build1) ...
135s Selecting previously unselected package libimagequant0:s390x.
135s Preparing to unpack .../15-libimagequant0_2.18.0-1build1_s390x.deb ...
135s Unpacking libimagequant0:s390x (2.18.0-1build1) ...
135s Selecting previously unselected package libjs-jquery.
135s Preparing to unpack .../16-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
135s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
135s Selecting previously unselected package libjs-jquery-ui.
135s Preparing to unpack .../17-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
135s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
135s Selecting previously unselected package liblapack3:s390x.
135s Preparing to unpack .../18-liblapack3_3.12.0-3build1_s390x.deb ...
135s Unpacking liblapack3:s390x (3.12.0-3build1) ...
135s Selecting previously unselected package liblbfgsb0:s390x.
135s Preparing to unpack .../19-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ...
135s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
135s Selecting previously unselected package liblcms2-2:s390x.
135s Preparing to unpack .../20-liblcms2-2_2.14-2build1_s390x.deb ...
135s Unpacking liblcms2-2:s390x (2.14-2build1) ...
135s Selecting previously unselected package libqhull-r8.0:s390x.
135s Preparing to unpack .../21-libqhull-r8.0_2020.2-6build1_s390x.deb ...
135s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ...
135s Selecting previously unselected package libraqm0:s390x.
135s Preparing to unpack .../22-libraqm0_0.10.1-1build1_s390x.deb ...
135s Unpacking libraqm0:s390x (0.10.1-1build1) ...
135s Selecting previously unselected package libtbbmalloc2:s390x.
135s Preparing to unpack .../23-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ...
135s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ...
135s Selecting previously unselected package libtbbbind-2-5:s390x.
135s Preparing to unpack .../24-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ...
135s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ...
135s Selecting previously unselected package libtbb12:s390x.
135s Preparing to unpack .../25-libtbb12_2021.11.0-2ubuntu2_s390x.deb ...
135s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ...
135s Selecting previously unselected package libwebpdemux2:s390x.
135s Preparing to unpack .../26-libwebpdemux2_1.4.0-0.1_s390x.deb ...
135s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ...
135s Selecting previously unselected package libwebpmux3:s390x.
135s Preparing to unpack .../27-libwebpmux3_1.4.0-0.1_s390x.deb ...
135s Unpacking libwebpmux3:s390x (1.4.0-0.1) ...
135s Selecting previously unselected package libxslt1.1:s390x.
135s Preparing to unpack .../28-libxslt1.1_1.1.39-0exp1build1_s390x.deb ...
135s Unpacking libxslt1.1:s390x (1.1.39-0exp1build1) ...
135s Selecting previously unselected package python-matplotlib-data.
135s Preparing to unpack .../29-python-matplotlib-data_3.6.3-1ubuntu5_all.deb ...
135s Unpacking python-matplotlib-data (3.6.3-1ubuntu5) ...
135s Selecting previously unselected package python3-all.
135s Preparing to unpack .../30-python3-all_3.12.3-0ubuntu1_s390x.deb ...
135s Unpacking python3-all (3.12.3-0ubuntu1) ...
135s Selecting previously unselected package python3-appdirs.
135s Preparing to unpack .../31-python3-appdirs_1.4.4-4_all.deb ...
135s Unpacking python3-appdirs (1.4.4-4) ...
135s Selecting previously unselected package python3-brotli.
135s Preparing to unpack .../32-python3-brotli_1.1.0-2build2_s390x.deb ...
135s Unpacking python3-brotli (1.1.0-2build2) ...
135s Selecting previously unselected package python3-numpy.
135s Preparing to unpack .../33-python3-numpy_1%3a1.26.4+ds-6ubuntu1_s390x.deb ...
135s Unpacking python3-numpy (1:1.26.4+ds-6ubuntu1) ...
135s Selecting previously unselected package python3-contourpy.
135s Preparing to unpack .../34-python3-contourpy_1.0.7-3_s390x.deb ...
135s Unpacking python3-contourpy (1.0.7-3) ...
135s Selecting previously unselected package python3-cycler.
135s Preparing to unpack .../35-python3-cycler_0.12.1-1_all.deb ...
135s Unpacking python3-cycler (0.12.1-1) ...
135s Selecting previously unselected package python3-dateutil.
135s Preparing to unpack .../36-python3-dateutil_2.9.0-2_all.deb ...
135s Unpacking python3-dateutil (2.9.0-2) ...
135s Selecting previously unselected package python3-decorator.
135s Preparing to unpack .../37-python3-decorator_5.1.1-5_all.deb ...
135s Unpacking python3-decorator (5.1.1-5) ...
135s Selecting previously unselected package python3-eagerpy.
135s Preparing to unpack .../38-python3-eagerpy_0.30.0-3_all.deb ...
135s Unpacking python3-eagerpy (0.30.0-3) ...
135s Selecting previously unselected package python3-scipy.
135s Preparing to unpack .../39-python3-scipy_1.11.4-10_s390x.deb ...
135s Unpacking python3-scipy (1.11.4-10) ...
136s Selecting previously unselected package python3-ufolib2.
136s Preparing to unpack .../40-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
136s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
136s Selecting previously unselected package python3-mpmath.
136s Preparing to unpack .../41-python3-mpmath_1.3.0-1_all.deb ...
136s Unpacking python3-mpmath (1.3.0-1) ...
136s Selecting previously unselected package python3-sympy.
136s Preparing to unpack .../42-python3-sympy_1.12-8_all.deb ...
136s Unpacking python3-sympy (1.12-8) ...
136s Selecting previously unselected package python3-fs.
136s Preparing to unpack .../43-python3-fs_2.4.16-4_all.deb ...
136s Unpacking python3-fs (2.4.16-4) ...
136s Selecting previously unselected package python3-lxml:s390x.
136s Preparing to unpack .../44-python3-lxml_5.2.1-1_s390x.deb ...
136s Unpacking python3-lxml:s390x (5.2.1-1) ...
136s Selecting previously unselected package python3-lz4.
136s Preparing to unpack .../45-python3-lz4_4.0.2+dfsg-1build4_s390x.deb ...
136s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ...
136s Selecting previously unselected package unicode-data.
136s Preparing to unpack .../46-unicode-data_15.1.0-1_all.deb ...
136s Unpacking unicode-data (15.1.0-1) ...
137s Selecting previously unselected package python3-fonttools.
137s Preparing to unpack .../47-python3-fonttools_4.46.0-1build2_s390x.deb ...
137s Unpacking python3-fonttools (4.46.0-1build2) ...
137s Selecting previously unselected package python3-gudhi.
137s Preparing to unpack .../48-python3-gudhi_3.9.0+dfsg-1build3_s390x.deb ...
137s Unpacking python3-gudhi (3.9.0+dfsg-1build3) ...
137s Selecting previously unselected package python3-iniconfig.
137s Preparing to unpack .../49-python3-iniconfig_1.1.1-2_all.deb ...
137s Unpacking python3-iniconfig (1.1.1-2) ...
137s Selecting previously unselected package python3-joblib.
137s Preparing to unpack .../50-python3-joblib_1.3.2-2_all.deb ...
137s Unpacking python3-joblib (1.3.2-2) ...
137s Selecting previously unselected package python3-kiwisolver.
137s Preparing to unpack .../51-python3-kiwisolver_1.4.5-1_s390x.deb ...
137s Unpacking python3-kiwisolver (1.4.5-1) ...
137s Selecting previously unselected package libopenjp2-7:s390x.
137s Preparing to unpack .../52-libopenjp2-7_2.5.0-2build3_s390x.deb ...
137s Unpacking libopenjp2-7:s390x (2.5.0-2build3) ...
137s Selecting previously unselected package python3-pil:s390x.
137s Preparing to unpack .../53-python3-pil_10.3.0-2_s390x.deb ...
137s Unpacking python3-pil:s390x (10.3.0-2) ...
137s Selecting previously unselected package python3-tk:s390x.
137s Preparing to unpack .../54-python3-tk_3.12.3-0ubuntu1_s390x.deb ...
137s Unpacking python3-tk:s390x (3.12.3-0ubuntu1) ...
137s Selecting previously unselected package python3-pil.imagetk:s390x.
137s Preparing to unpack .../55-python3-pil.imagetk_10.3.0-2_s390x.deb ...
137s Unpacking python3-pil.imagetk:s390x (10.3.0-2) ...
137s Selecting previously unselected package python3-packaging.
137s Preparing to unpack .../56-python3-packaging_24.0-1_all.deb ...
137s Unpacking python3-packaging (24.0-1) ...
137s Selecting previously unselected package python3-matplotlib.
137s Preparing to unpack .../57-python3-matplotlib_3.6.3-1ubuntu5_s390x.deb ...
137s Unpacking python3-matplotlib (3.6.3-1ubuntu5) ...
137s Selecting previously unselected package python3-pluggy.
137s Preparing to unpack .../58-python3-pluggy_1.5.0-1_all.deb ...
137s Unpacking python3-pluggy (1.5.0-1) ...
137s Selecting previously unselected package python3-pot.
137s Preparing to unpack .../59-python3-pot_0.9.3+dfsg-2_s390x.deb ...
137s Unpacking python3-pot (0.9.3+dfsg-2) ...
137s Selecting previously unselected package python3-pytest.
137s Preparing to unpack .../60-python3-pytest_8.2.1-2_all.deb ...
137s Unpacking python3-pytest (8.2.1-2) ...
137s Selecting previously unselected package python3-threadpoolctl.
137s Preparing to unpack .../61-python3-threadpoolctl_3.1.0-1_all.deb ...
137s Unpacking python3-threadpoolctl (3.1.0-1) ...
137s Selecting previously unselected package python3-sklearn-lib:s390x.
137s Preparing to unpack .../62-python3-sklearn-lib_1.4.2+dfsg-1_s390x.deb ...
137s Unpacking python3-sklearn-lib:s390x (1.4.2+dfsg-1) ...
137s Selecting previously unselected package python3-sklearn.
137s Preparing to unpack .../63-python3-sklearn_1.4.2+dfsg-1_all.deb ...
137s Unpacking python3-sklearn (1.4.2+dfsg-1) ...
138s Selecting previously unselected package autopkgtest-satdep.
138s Preparing to unpack .../64-1-autopkgtest-satdep.deb ...
138s Unpacking autopkgtest-satdep (0) ...
138s Setting up libgraphite2-3:s390x (1.3.14-2build1) ...
138s Setting up liblcms2-2:s390x (2.14-2build1) ...
138s Setting up python3-iniconfig (1.1.1-2) ...
138s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ...
138s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
138s Setting up python3-joblib (1.3.2-2) ...
138s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
138s Setting up fonts-lyx (2.4.0~RC4-1) ...
138s Setting up libwebpdemux2:s390x (1.4.0-0.1) ...
138s Setting up python3-threadpoolctl (3.1.0-1) ...
138s Setting up x11-common (1:7.7+23ubuntu3) ...
139s Setting up libqhull-r8.0:s390x (2020.2-6build1) ...
139s Setting up python3-all (3.12.3-0ubuntu1) ...
139s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ...
139s Setting up unicode-data (15.1.0-1) ...
139s Setting up python3-decorator (5.1.1-5) ...
139s Setting up libblas3:s390x (3.12.0-3build1) ...
139s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
139s Setting up python3-packaging (24.0-1) ...
139s Setting up python3-brotli (1.1.0-2build2) ...
139s Setting up python3-cycler (0.12.1-1) ...
139s Setting up libimagequant0:s390x (2.18.0-1build1) ...
139s Setting up python3-kiwisolver (1.4.5-1) ...
139s Setting up libhwloc15:s390x (2.10.0-1build1) ...
139s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ...
139s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ...
139s Setting up python3-pluggy (1.5.0-1) ...
140s Setting up libxslt1.1:s390x (1.1.39-0exp1build1) ...
140s Setting up libopenjp2-7:s390x (2.5.0-2build3) ...
140s Setting up libharfbuzz0b:s390x (8.3.0-2build2) ...
140s Setting up python3-dateutil (2.9.0-2) ...
140s Setting up libxss1:s390x (1:1.2.3-1build3) ...
140s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
140s Setting up python3-mpmath (1.3.0-1) ...
140s Setting up python-matplotlib-data (3.6.3-1ubuntu5) ...
140s Setting up libwebpmux3:s390x (1.4.0-0.1) ...
141s Setting up python3-appdirs (1.4.4-4) ...
141s Setting up python3-sympy (1.12-8) ...
148s Setting up liblapack3:s390x (3.12.0-3build1) ...
148s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
148s Setting up libxft2:s390x (2.3.6-1build1) ...
148s Setting up python3-pytest (8.2.1-2) ...
149s Setting up libtk8.6:s390x (8.6.14-1build1) ...
149s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ...
149s Setting up python3-fs (2.4.16-4) ...
149s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
149s Setting up libraqm0:s390x (0.10.1-1build1) ...
149s Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ...
151s Setting up python3-lxml:s390x (5.2.1-1) ...
152s Setting up python3-contourpy (1.0.7-3) ...
152s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
152s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
152s Setting up python3-scipy (1.11.4-10) ...
156s Setting up python3-pot (0.9.3+dfsg-2) ...
156s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o'
156s   """
156s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o'
156s   """
156s Setting up blt (2.5.3+dfsg-7build1) ...
156s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-1) ...
156s Setting up python3-tk:s390x (3.12.3-0ubuntu1) ...
156s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ...
156s Setting up python3-pil:s390x (10.3.0-2) ...
157s Setting up python3-pil.imagetk:s390x (10.3.0-2) ...
157s Setting up python3-eagerpy (0.30.0-3) ...
157s Setting up python3-sklearn (1.4.2+dfsg-1) ...
159s Setting up python3-gudhi (3.9.0+dfsg-1build3) ...
160s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
160s Setting up python3-fonttools (4.46.0-1build2) ...
161s Setting up python3-matplotlib (3.6.3-1ubuntu5) ...
163s Setting up autopkgtest-satdep (0) ...
163s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
163s Processing triggers for man-db (2.12.1-1) ...
168s (Reading database ... 62477 files and directories currently installed.)
168s Removing autopkgtest-satdep (0) ...
169s autopkgtest [08:08:57]: test python-upstream.sh: [-----------------------
170s Running tests with Python 3.12.
172s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py']
172s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py']
172s ============================= test session starts ==============================
172s platform linux -- Python 3.12.3, pytest-8.2.1, pluggy-1.5.0
172s rootdir: /tmp/autopkgtest.yMM6eq/autopkgtest_tmp
172s collected 156 items / 31 deselected / 125 selected
172s 
172s test/test_alpha_complex.py .............                                 [ 10%]
172s test/test_betti_curve_representations.py ....                            [ 13%]
172s test/test_bottleneck_distance.py .                                       [ 14%]
172s test/test_collapse_edges.py ..                                           [ 16%]
172s test/test_cover_complex.py .......                                       [ 21%]
172s test/test_cubical_complex.py ..................                          [ 36%]
172s test/test_datasets_generators.py ..                                      [ 37%]
172s test/test_dtm_rips_complex.py ...                                        [ 40%]
172s test/test_euclidean_witness_complex.py ....                              [ 43%]
172s test/test_off.py .                                                       [ 44%]
172s test/test_persistence_graphical_tools.py ......                          [ 48%]
172s test/test_reader_utils.py ......                                         [ 53%]
172s test/test_representations_preprocessing.py .                             [ 54%]
172s test/test_rips_complex.py .......                                        [ 60%]
172s test/test_simplex_generators.py ...                                      [ 62%]
172s test/test_simplex_tree.py ....................                           [ 78%]
172s test/test_simplex_tree_serialization.py .                                [ 79%]
172s test/test_sklearn_cubical_persistence.py ...                             [ 81%]
172s test/test_subsampling.py .....                                           [ 85%]
172s test/test_tangential_complex.py .                                        [ 86%]
172s test/test_time_delay.py .                                                [ 87%]
172s test/test_tomato.py .                                                    [ 88%]
172s test/test_wasserstein_barycenter.py .                                    [ 88%]
173s test/test_wasserstein_distance.py .......                                [ 94%]
173s test/test_weighted_rips_complex.py ....                                  [ 97%]
173s test/test_witness_complex.py ...                                         [100%]
173s 
173s =============================== warnings summary ===============================
173s test/test_persistence_graphical_tools.py::test_limit_plot_persistence
173s   /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:103: MatplotlibDeprecationWarning: The checkdep_usetex function was deprecated in Matplotlib 3.6 and will be removed two minor releases later. Use a vendored copy of this function instead.
173s     return checkdep_usetex(True)
173s 
173s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter
173s   /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:60: UserWarning: Computing barycenter of empty diag set. Returns None.
173s     warnings.warn("Computing barycenter of empty diag set. Returns None.")
173s 
173s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
173s ================ 125 passed, 31 deselected, 2 warnings in 2.75s ================
173s **********
173s autopkgtest [08:09:01]: test python-upstream.sh: -----------------------]
174s python-upstream.sh   PASS
174s autopkgtest [08:09:02]: test python-upstream.sh:  - - - - - - - - - - results - - - - - - - - - -
174s autopkgtest [08:09:02]: @@@@@@@@@@@@@@@@@@@@ summary
174s python-upstream.sh   PASS
191s Creating nova instance adt-oracular-s390x-gudhi-20240528-080608-juju-7f2275-prod-proposed-migration-environment-2-8cf30a7d-12bf-460c-9309-a0f1ad35f596 from image adt/ubuntu-oracular-s390x-server-20240528.img (UUID 435e79ec-b8b3-404f-93f3-de0b99978d6f)...